RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 SAFB2Q14151 953 aaKnown RBP eCLIP17.46■□□□□ 0.38
CASC4-201ENST00000299957 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.46■□□□□ 0.38
CASC4-201ENST00000299957 FGD6Q6ZV73 1430 aa17.45■□□□□ 0.38
CASC4-201ENST00000299957 PPM1GO15355 546 aaPredicted RBP17.45■□□□□ 0.38
CASC4-201ENST00000299957 SKAP1Q86WV1 359 aa17.43■□□□□ 0.38
CASC4-201ENST00000299957 UPF2Q9HAU5 1272 aaKnown RBP17.43■□□□□ 0.38
CASC4-201ENST00000299957 IPO9Q96P70 1041 aaKnown RBP17.42■□□□□ 0.38
CASC4-201ENST00000299957 DNAJC5BQ9UF47 199 aa17.42■□□□□ 0.38
CASC4-201ENST00000299957 ROCK2O75116 1388 aaKnown RBP17.41■□□□□ 0.38
CASC4-201ENST00000299957 ZBED9Q6R2W3 1325 aa17.4■□□□□ 0.38
CASC4-201ENST00000299957 PLEKHG5O94827 1062 aa17.4■□□□□ 0.38
CASC4-201ENST00000299957 CDCA7LQ96GN5 454 aa17.4■□□□□ 0.38
CASC4-201ENST00000299957 FANCD2Q9BXW9 1451 aa17.4■□□□□ 0.38
CASC4-201ENST00000299957 CUX1P39880 1505 aa17.39■□□□□ 0.37
CASC4-201ENST00000299957 CCDC7Q96M83 1385 aa17.39■□□□□ 0.37
CASC4-201ENST00000299957 AKNAQ7Z591 1439 aa17.37■□□□□ 0.37
CASC4-201ENST00000299957 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
CASC4-201ENST00000299957 USP47Q96K76 1375 aa17.37■□□□□ 0.37
CASC4-201ENST00000299957 TMF1P82094 1093 aa17.37■□□□□ 0.37
CASC4-201ENST00000299957 STAG3Q9UJ98 1225 aa17.36■□□□□ 0.37
CASC4-201ENST00000299957 CLUAP1Q96AJ1 413 aa17.36■□□□□ 0.37
CASC4-201ENST00000299957 CFTRP13569 1480 aa17.36■□□□□ 0.37
CASC4-201ENST00000299957 PANK3Q9H999 370 aa17.36■□□□□ 0.37
CASC4-201ENST00000299957 PDS5BQ9NTI5 1447 aa17.35■□□□□ 0.37
CASC4-201ENST00000299957 UACAQ9BZF9 1416 aa17.35■□□□□ 0.37
CASC4-201ENST00000299957 NUTM2DQ5VT03 806 aaPredicted RBP17.34■□□□□ 0.37
CASC4-201ENST00000299957 FANCIQ9NVI1 1328 aa17.33■□□□□ 0.37
CASC4-201ENST00000299957 PDE4AP27815 886 aa17.33■□□□□ 0.37
CASC4-201ENST00000299957 KTN1Q86UP2 1357 aaKnown RBP17.33■□□□□ 0.36
CASC4-201ENST00000299957 ERICH6BQ5W0A0 696 aa17.33■□□□□ 0.36
CASC4-201ENST00000299957 CRBNQ96SW2 442 aa17.33■□□□□ 0.36
CASC4-201ENST00000299957 BCL2L13Q9BXK5 485 aa17.33■□□□□ 0.36
CASC4-201ENST00000299957 RRP7AQ9Y3A4 280 aaKnown RBP17.33■□□□□ 0.36
CASC4-201ENST00000299957 DDRGK1Q96HY6 314 aa17.32■□□□□ 0.36
CASC4-201ENST00000299957 U2SURPO15042 1029 aaKnown RBP17.32■□□□□ 0.36
CASC4-201ENST00000299957 NLRP13Q86W25 1043 aa17.31■□□□□ 0.36
CASC4-201ENST00000299957 NESP48681 1621 aa17.31■□□□□ 0.36
CASC4-201ENST00000299957 TPRNQ4KMQ1 711 aa17.31■□□□□ 0.36
CASC4-201ENST00000299957 RRP1P56182 461 aaKnown RBP17.3■□□□□ 0.36
CASC4-201ENST00000299957 NCOA2Q15596 1464 aa17.3■□□□□ 0.36
CASC4-201ENST00000299957 MYOM3Q5VTT5 1437 aa17.29■□□□□ 0.36
CASC4-201ENST00000299957 GZF1Q9H116 711 aaPredicted RBP17.28■□□□□ 0.36
CASC4-201ENST00000299957 JPH4Q96JJ6 628 aa17.28■□□□□ 0.36
CASC4-201ENST00000299957 TOP2BQ02880 1626 aa17.27■□□□□ 0.36
CASC4-201ENST00000299957 RALBP1Q15311 655 aa17.27■□□□□ 0.36
CASC4-201ENST00000299957 NBPF1Q3BBV0 1214 aa17.27■□□□□ 0.36
CASC4-201ENST00000299957 FTSJ3Q8IY81 847 aaKnown RBP17.27■□□□□ 0.35
CASC4-201ENST00000299957 TCERG1O14776 1098 aaKnown RBP17.26■□□□□ 0.35
CASC4-201ENST00000299957 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
CASC4-201ENST00000299957 AQRO60306 1485 aaKnown RBP eCLIP17.26■□□□□ 0.358e-8■■■■■ 39.5
CASC4-201ENST00000299957 ANKRD30AQ9BXX3 1397 aa17.26■□□□□ 0.35
CASC4-201ENST00000299957 CNTLNQ9NXG0 1405 aa17.25■□□□□ 0.35
CASC4-201ENST00000299957 STK26Q9P289 416 aa17.24■□□□□ 0.35
CASC4-201ENST00000299957 MYBBP1AQ9BQG0 1328 aaKnown RBP17.24■□□□□ 0.35
CASC4-201ENST00000299957 NCAPD3P42695 1498 aa17.23■□□□□ 0.35
CASC4-201ENST00000299957 ARID4BQ4LE39 1312 aaPredicted RBP17.23■□□□□ 0.35
CASC4-201ENST00000299957 GGT6Q6P531 493 aa17.23■□□□□ 0.35
CASC4-201ENST00000299957 TIAM1Q13009 1591 aa17.22■□□□□ 0.35
CASC4-201ENST00000299957 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
CASC4-201ENST00000299957 APAF1O14727 1248 aa17.21■□□□□ 0.35
CASC4-201ENST00000299957 BECN1Q14457 450 aa17.2■□□□□ 0.34
CASC4-201ENST00000299957 NAIPQ13075 1403 aa17.2■□□□□ 0.34
CASC4-201ENST00000299957 ERCC6Q03468 1493 aa17.2■□□□□ 0.34
CASC4-201ENST00000299957 SOX12O15370 315 aa17.2■□□□□ 0.34
CASC4-201ENST00000299957 NPM1P06748 294 aaKnown RBP eCLIP17.2■□□□□ 0.34
CASC4-201ENST00000299957 MORC1Q86VD1 984 aa17.2■□□□□ 0.34
CASC4-201ENST00000299957 GAPVD1Q14C86 1478 aa17.19■□□□□ 0.34
CASC4-201ENST00000299957 GOLGA2Q08379 1002 aa17.19■□□□□ 0.34
CASC4-201ENST00000299957 CDCA8Q53HL2 280 aa17.19■□□□□ 0.34
CASC4-201ENST00000299957 IL27Q8NEV9 243 aa17.18■□□□□ 0.34
CASC4-201ENST00000299957 MAPKBP1O60336 1514 aa17.18■□□□□ 0.34
CASC4-201ENST00000299957 PNISRQ8TF01 805 aaKnown RBP17.18■□□□□ 0.34
CASC4-201ENST00000299957 KIF15Q9NS87 1388 aa17.18■□□□□ 0.34
CASC4-201ENST00000299957 BICRAQ9NZM4 1560 aa17.18■□□□□ 0.34
CASC4-201ENST00000299957 COG6Q9Y2V7 657 aa17.17■□□□□ 0.34
CASC4-201ENST00000299957 U2AF1L5P0DN76 240 aaPredicted RBP17.16■□□□□ 0.34
CASC4-201ENST00000299957 U2AF1Q01081 240 aaKnown RBP eCLIP17.16■□□□□ 0.34
CASC4-201ENST00000299957 ADAMTS8Q9UP79 889 aa17.16■□□□□ 0.34
CASC4-201ENST00000299957 PTPRKQ15262 1439 aa17.16■□□□□ 0.34
CASC4-201ENST00000299957 NCLP19338 710 aaKnown RBP17.16■□□□□ 0.34
CASC4-201ENST00000299957 APBB1O00213 710 aa17.15■□□□□ 0.34
CASC4-201ENST00000299957 KIF3BO15066 747 aa17.15■□□□□ 0.34
CASC4-201ENST00000299957 TRAK1Q9UPV9 953 aa17.15■□□□□ 0.34
CASC4-201ENST00000299957 HFM1A2PYH4 1435 aa17.15■□□□□ 0.34
CASC4-201ENST00000299957 CFAP53Q96M91 514 aa17.14■□□□□ 0.33
CASC4-201ENST00000299957 FOXD4L1Q9NU39 408 aa17.12■□□□□ 0.33
CASC4-201ENST00000299957 SRPK2P78362 688 aaKnown RBP17.12■□□□□ 0.33
CASC4-201ENST00000299957 MAPK8IP3Q9UPT6 1336 aa17.09■□□□□ 0.33
CASC4-201ENST00000299957 MFAP1P55081 439 aaKnown RBP17.09■□□□□ 0.33
CASC4-201ENST00000299957 POGKQ9P215 609 aa17.09■□□□□ 0.33
CASC4-201ENST00000299957 POLA1P09884 1462 aaPredicted RBP17.08■□□□□ 0.33
CASC4-201ENST00000299957 PCF11O94913 1555 aaKnown RBP17.08■□□□□ 0.33
CASC4-201ENST00000299957 ZBTB7CA1YPR0 619 aa17.08■□□□□ 0.32
CASC4-201ENST00000299957 ELL2O00472 640 aaPredicted RBP17.08■□□□□ 0.32
CASC4-201ENST00000299957 C20orf194Q5TEA3 1177 aa17.08■□□□□ 0.32
CASC4-201ENST00000299957 CCDC144AA2RUR9 1427 aa17.08■□□□□ 0.32
CASC4-201ENST00000299957 NAP1L5Q96NT1 182 aaPredicted RBP17.07■□□□□ 0.32
CASC4-201ENST00000299957 PRG4Q92954 1404 aaPredicted RBP17.07■□□□□ 0.32
CASC4-201ENST00000299957 FYCO1Q9BQS8 1478 aa17.07■□□□□ 0.32
CASC4-201ENST00000299957 PANK1Q8TE04 598 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms