RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 PCDHB13Q9Y5F0 798 aa10.94□□□□□ -0.66
DEPDC4-201ENST00000299185 PBRM1Q86U86 1689 aa10.93□□□□□ -0.66
DEPDC4-201ENST00000299185 FAM9AQ8IZU1 332 aaPredicted RBP10.93□□□□□ -0.66
DEPDC4-201ENST00000299185 CDAN1Q8IWY9 1227 aa10.92□□□□□ -0.66
DEPDC4-201ENST00000299185 GAPVD1Q14C86 1478 aa10.9□□□□□ -0.66
DEPDC4-201ENST00000299185 SNAPC4Q5SXM2 1469 aa10.9□□□□□ -0.66
DEPDC4-201ENST00000299185 KIF27Q86VH2 1401 aa10.88□□□□□ -0.67
DEPDC4-201ENST00000299185 SLAIN1Q8ND83 568 aa10.88□□□□□ -0.67
DEPDC4-201ENST00000299185 ADAMTS12P58397 1594 aa10.87□□□□□ -0.67
DEPDC4-201ENST00000299185 PLCG2P16885 1265 aa10.86□□□□□ -0.67
DEPDC4-201ENST00000299185 GRIN2BQ13224 1484 aa10.86□□□□□ -0.67
DEPDC4-201ENST00000299185 FAM212AQ96EL1 285 aa10.85□□□□□ -0.67
DEPDC4-201ENST00000299185 NUBP1P53384 320 aa10.84□□□□□ -0.67
DEPDC4-201ENST00000299185 IFNL1Q8IU54 200 aa10.84□□□□□ -0.67
DEPDC4-201ENST00000299185 TMEM106CQ9BVX2 250 aa10.84□□□□□ -0.67
DEPDC4-201ENST00000299185 CHD1O14646 1710 aa10.82□□□□□ -0.68
DEPDC4-201ENST00000299185 ST18O60284 1047 aa10.82□□□□□ -0.68
DEPDC4-201ENST00000299185 ERICH3Q5RHP9 1530 aa10.82□□□□□ -0.68
DEPDC4-201ENST00000299185 IGF1RP08069 1367 aa10.81□□□□□ -0.68
DEPDC4-201ENST00000299185 MAGI1Q96QZ7 1491 aaPredicted RBP10.8□□□□□ -0.68
DEPDC4-201ENST00000299185 CUL7Q14999 1698 aa10.79□□□□□ -0.68
DEPDC4-201ENST00000299185 TMEM121BQ9BXQ6 578 aaPredicted RBP10.78□□□□□ -0.68
DEPDC4-201ENST00000299185 RAPGEF2Q9Y4G8 1499 aa10.78□□□□□ -0.68
DEPDC4-201ENST00000299185 EEA1Q15075 1411 aa10.77□□□□□ -0.68
DEPDC4-201ENST00000299185 SNPHO15079 494 aa10.77□□□□□ -0.69
DEPDC4-201ENST00000299185 IRX5P78411 483 aaPredicted RBP10.77□□□□□ -0.69
DEPDC4-201ENST00000299185 FHAD1B1AJZ9 1412 aa10.76□□□□□ -0.69
DEPDC4-201ENST00000299185 SYNJ2O15056 1496 aa10.76□□□□□ -0.69
DEPDC4-201ENST00000299185 PRXQ9BXM0 1461 aa10.76□□□□□ -0.69
DEPDC4-201ENST00000299185 CARMIL1Q5VZK9 1371 aa10.76□□□□□ -0.69
DEPDC4-201ENST00000299185 GRIN2AQ12879 1464 aa10.75□□□□□ -0.69
DEPDC4-201ENST00000299185 CEP170Q5SW79 1584 aa10.75□□□□□ -0.69
DEPDC4-201ENST00000299185 OCEL1Q9H607 264 aa10.75□□□□□ -0.69
DEPDC4-201ENST00000299185 KIF21BO75037 1637 aa10.75□□□□□ -0.69
DEPDC4-201ENST00000299185 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.71□□□□□ -0.69
DEPDC4-201ENST00000299185 GOLGA3Q08378 1498 aa10.7□□□□□ -0.7
DEPDC4-201ENST00000299185 CHMP7Q8WUX9 453 aaPredicted RBP10.7□□□□□ -0.7
DEPDC4-201ENST00000299185 NUP160Q12769 1436 aa10.68□□□□□ -0.7
DEPDC4-201ENST00000299185 LOC105371045A0A1W2PR82 267 aa10.68□□□□□ -0.7
DEPDC4-201ENST00000299185 CLASP1Q7Z460 1538 aa10.68□□□□□ -0.7
DEPDC4-201ENST00000299185 DCAF8Q5TAQ9 597 aa10.67□□□□□ -0.7
DEPDC4-201ENST00000299185 CTTNBP2Q8WZ74 1663 aa10.66□□□□□ -0.7
DEPDC4-201ENST00000299185 MMRN1Q13201 1228 aa10.66□□□□□ -0.7
DEPDC4-201ENST00000299185 RANGAP1P46060 587 aaPredicted RBP10.65□□□□□ -0.7
DEPDC4-201ENST00000299185 SPNS2Q8IVW8 549 aa10.65□□□□□ -0.7
DEPDC4-201ENST00000299185 ERCC6L2Q5T890 1561 aa10.65□□□□□ -0.71
DEPDC4-201ENST00000299185 PYGBP11216 843 aa10.64□□□□□ -0.71
DEPDC4-201ENST00000299185 IQGAP2Q13576 1575 aa10.63□□□□□ -0.71
DEPDC4-201ENST00000299185 UBTFP17480 764 aaKnown RBP10.61□□□□□ -0.71
DEPDC4-201ENST00000299185 PCDHB8Q9UN66 801 aa10.61□□□□□ -0.71
DEPDC4-201ENST00000299185 FKBP8Q14318 412 aa10.6□□□□□ -0.71
DEPDC4-201ENST00000299185 KIAA0586Q9BVV6 1533 aa10.59□□□□□ -0.71
DEPDC4-201ENST00000299185 L3MBTL3Q96JM7 780 aaPredicted RBP10.59□□□□□ -0.71
DEPDC4-201ENST00000299185 RIMBP3CA6NJZ7 1639 aa10.58□□□□□ -0.72
DEPDC4-201ENST00000299185 RIMBP3BA6NNM3 1639 aa10.58□□□□□ -0.72
DEPDC4-201ENST00000299185 SHROOM2Q13796 1616 aa10.58□□□□□ -0.72
DEPDC4-201ENST00000299185 RIMBP3Q9UFD9 1639 aa10.58□□□□□ -0.72
DEPDC4-201ENST00000299185 C3orf67Q6ZVT6 689 aa10.58□□□□□ -0.72
DEPDC4-201ENST00000299185 MARVELD3Q96A59 401 aa10.58□□□□□ -0.72
DEPDC4-201ENST00000299185 GOLGA2Q08379 1002 aa10.57□□□□□ -0.72
DEPDC4-201ENST00000299185 FBXO3Q9UK99 471 aa10.57□□□□□ -0.72
DEPDC4-201ENST00000299185 KIAA0556O60303 1618 aa10.56□□□□□ -0.72
DEPDC4-201ENST00000299185 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
DEPDC4-201ENST00000299185 ZNF467Q7Z7K2 595 aaPredicted RBP10.56□□□□□ -0.72
DEPDC4-201ENST00000299185 TNIKQ9UKE5 1360 aa10.55□□□□□ -0.72
DEPDC4-201ENST00000299185 DISP1Q96F81 1524 aa10.55□□□□□ -0.72
DEPDC4-201ENST00000299185 UGGT2Q9NYU1 1516 aa10.55□□□□□ -0.72
DEPDC4-201ENST00000299185 FHOD3Q2V2M9 1422 aa10.55□□□□□ -0.72
DEPDC4-201ENST00000299185 CEP162Q5TB80 1403 aa10.55□□□□□ -0.72
DEPDC4-201ENST00000299185 PRG4Q92954 1404 aaPredicted RBP10.55□□□□□ -0.72
DEPDC4-201ENST00000299185 GSE1Q14687 1217 aa10.54□□□□□ -0.72
DEPDC4-201ENST00000299185 SAMD9Q5K651 1589 aa10.54□□□□□ -0.72
DEPDC4-201ENST00000299185 ILDR1Q86SU0 546 aaPredicted RBP10.54□□□□□ -0.72
DEPDC4-201ENST00000299185 P3H3Q8IVL6 736 aa10.54□□□□□ -0.72
DEPDC4-201ENST00000299185 ARHGAP35Q9NRY4 1499 aa10.54□□□□□ -0.72
DEPDC4-201ENST00000299185 TTBK1Q5TCY1 1321 aaPredicted RBP10.54□□□□□ -0.72
DEPDC4-201ENST00000299185 ARHGEF11O15085 1522 aa10.53□□□□□ -0.72
DEPDC4-201ENST00000299185 EMP3P54852 163 aa10.53□□□□□ -0.72
DEPDC4-201ENST00000299185 PDCD7Q8N8D1 485 aaKnown RBP10.53□□□□□ -0.72
DEPDC4-201ENST00000299185 ARAP1Q96P48 1450 aa10.53□□□□□ -0.72
DEPDC4-201ENST00000299185 CLIP1P30622 1438 aa10.52□□□□□ -0.73
DEPDC4-201ENST00000299185 JPH4Q96JJ6 628 aa10.5□□□□□ -0.73
DEPDC4-201ENST00000299185 CYB5RLQ6IPT4 315 aa10.49□□□□□ -0.73
DEPDC4-201ENST00000299185 EFCAB5A4FU69 1503 aa10.48□□□□□ -0.73
DEPDC4-201ENST00000299185 CHRM1P11229 460 aaPredicted RBP10.48□□□□□ -0.73
DEPDC4-201ENST00000299185 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.48□□□□□ -0.73
DEPDC4-201ENST00000299185 PCF11O94913 1555 aaKnown RBP10.47□□□□□ -0.73
DEPDC4-201ENST00000299185 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
DEPDC4-201ENST00000299185 CARMIL2Q6F5E8 1435 aa10.44□□□□□ -0.74
DEPDC4-201ENST00000299185 ARID3CA6NKF2 412 aa10.44□□□□□ -0.74
DEPDC4-201ENST00000299185 HS3ST6Q96QI5 342 aa10.44□□□□□ -0.74
DEPDC4-201ENST00000299185 PLB1Q6P1J6 1458 aa10.43□□□□□ -0.74
DEPDC4-201ENST00000299185 FAM205CA6NFA0 338 aa10.43□□□□□ -0.74
DEPDC4-201ENST00000299185 PSEN1P49768 467 aa10.43□□□□□ -0.74
DEPDC4-201ENST00000299185 PTPRGP23470 1445 aa10.41□□□□□ -0.74
DEPDC4-201ENST00000299185 ADCY10Q96PN6 1610 aa10.4□□□□□ -0.74
DEPDC4-201ENST00000299185 ABCA8O94911 1581 aa10.4□□□□□ -0.74
DEPDC4-201ENST00000299185 G3V3G9 751 aa10.4□□□□□ -0.74
DEPDC4-201ENST00000299185 KRTAP3-3Q9BYR6 98 aa10.4□□□□□ -0.74
DEPDC4-201ENST00000299185 KRTAP3-2Q9BYR7 98 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms