RNA–Protein interactions for RNA: ENST00000298173.7

GTF2A1-201, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 2

Gene GTF2A1, Length 1,677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-201ENST00000298173 PLCH2O75038 1416 aa37.19■■■■□ 3.54
GTF2A1-201ENST00000298173 ITGAEP38570 1179 aa37.18■■■■□ 3.54
GTF2A1-201ENST00000298173 CAMSAP2Q08AD1 1489 aa37.17■■■■□ 3.54
GTF2A1-201ENST00000298173 DNAJC5Q9H3Z4 198 aa37.13■■■■□ 3.53
GTF2A1-201ENST00000298173 ARAP3Q8WWN8 1544 aa37.13■■■■□ 3.53
GTF2A1-201ENST00000298173 PTPRKQ15262 1439 aa37.13■■■■□ 3.53
GTF2A1-201ENST00000298173 ZNF777Q9ULD5 760 aaPredicted RBP37.12■■■■□ 3.53
GTF2A1-201ENST00000298173 ARHGAP5Q13017 1502 aa37.1■■■■□ 3.53
GTF2A1-201ENST00000298173 SAMD9LQ8IVG5 1584 aa37.08■■■■□ 3.53
GTF2A1-201ENST00000298173 DNMT1P26358 1616 aaKnown RBP37.07■■■■□ 3.52
GTF2A1-201ENST00000298173 ABCC5O15440 1437 aa37.04■■■■□ 3.52
GTF2A1-201ENST00000298173 DAPK1P53355 1430 aa37.04■■■■□ 3.52
GTF2A1-201ENST00000298173 EFCAB2Q5VUJ9 269 aa37.03■■■■□ 3.52
GTF2A1-201ENST00000298173 GLI2P10070 1586 aa37.01■■■■□ 3.52
GTF2A1-201ENST00000298173 MBD5Q9P267 1494 aa36.99■■■■□ 3.51
GTF2A1-201ENST00000298173 CD109Q6YHK3 1445 aa36.97■■■■□ 3.51
GTF2A1-201ENST00000298173 KIAA1107Q9UPP5 1409 aa36.97■■■■□ 3.51
GTF2A1-201ENST00000298173 ARHGEF5Q12774 1597 aa36.96■■■■□ 3.51
GTF2A1-201ENST00000298173 PLEKHH2Q8IVE3 1493 aa36.96■■■■□ 3.51
GTF2A1-201ENST00000298173 HNRNPMP52272 730 aaKnown RBP eCLIP36.93■■■■□ 3.5
GTF2A1-201ENST00000298173 DIP2BQ9P265 1576 aa36.93■■■■□ 3.5
GTF2A1-201ENST00000298173 RSPH4AQ5TD94 716 aa36.93■■■■□ 3.5
GTF2A1-201ENST00000298173 FANCAO15360 1455 aa36.92■■■■□ 3.5
GTF2A1-201ENST00000298173 CROCC2H7BZ55 1655 aa36.91■■■■□ 3.5
GTF2A1-201ENST00000298173 MAP3K4Q9Y6R4 1608 aa36.9■■■■□ 3.5
GTF2A1-201ENST00000298173 AKNAQ7Z591 1439 aa36.89■■■■□ 3.5
GTF2A1-201ENST00000298173 SETD5Q9C0A6 1442 aa36.89■■■■□ 3.5
GTF2A1-201ENST00000298173 SYCP2Q9BX26 1530 aa36.89■■■■□ 3.5
GTF2A1-201ENST00000298173 ARHGEF12Q9NZN5 1544 aa36.89■■■■□ 3.5
GTF2A1-201ENST00000298173 CHIC2Q9UKJ5 165 aa36.88■■■■□ 3.49
GTF2A1-201ENST00000298173 ABCC1P33527 1531 aa36.87■■■■□ 3.49
GTF2A1-201ENST00000298173 HFM1A2PYH4 1435 aa36.87■■■■□ 3.49
GTF2A1-201ENST00000298173 ROCK1Q13464 1354 aa36.87■■■■□ 3.49
GTF2A1-201ENST00000298173 FAM69CQ0P6D2 419 aa36.84■■■■□ 3.49
GTF2A1-201ENST00000298173 CCDC141Q6ZP82 1450 aa36.84■■■■□ 3.49
GTF2A1-201ENST00000298173 SHANK2Q9UPX8 1470 aa36.84■■■■□ 3.49
GTF2A1-201ENST00000298173 NAIPQ13075 1403 aa36.83■■■■□ 3.49
GTF2A1-201ENST00000298173 RAB3GAP2Q9H2M9 1393 aa36.81■■■■□ 3.48
GTF2A1-201ENST00000298173 HRCP23327 699 aa36.8■■■■□ 3.48
GTF2A1-201ENST00000298173 ADGRL2O95490 1459 aa36.8■■■■□ 3.48
GTF2A1-201ENST00000298173 TSPY4P0CV99 314 aa36.78■■■■□ 3.48
GTF2A1-201ENST00000298173 TSPY10P0CW01 314 aa36.78■■■■□ 3.48
GTF2A1-201ENST00000298173 ADGBQ8N7X0 1667 aa36.78■■■■□ 3.48
GTF2A1-201ENST00000298173 CFAP74Q9C0B2 1584 aa36.78■■■■□ 3.48
GTF2A1-201ENST00000298173 RRP7BPQ9NSQ0 103 aa36.77■■■■□ 3.48
GTF2A1-201ENST00000298173 NCOA1Q15788 1441 aa36.77■■■■□ 3.48
GTF2A1-201ENST00000298173 KIF13AQ9H1H9 1805 aa36.76■■■■□ 3.48
GTF2A1-201ENST00000298173 C9orf84Q5VXU9 1444 aa36.76■■■■□ 3.47
GTF2A1-201ENST00000298173 GCC2Q8IWJ2 1684 aa36.75■■■■□ 3.47
GTF2A1-201ENST00000298173 ADGRL1O94910 1474 aa36.74■■■■□ 3.47
GTF2A1-201ENST00000298173 TRAPPC8Q9Y2L5 1435 aa36.74■■■■□ 3.47
GTF2A1-201ENST00000298173 NEO1Q92859 1461 aa36.74■■■■□ 3.47
GTF2A1-201ENST00000298173 MAST1Q9Y2H9 1570 aa36.73■■■■□ 3.47
GTF2A1-201ENST00000298173 SCAPERQ9BY12 1400 aa36.71■■■■□ 3.47
GTF2A1-201ENST00000298173 ANKRD30AQ9BXX3 1397 aa36.7■■■■□ 3.47
GTF2A1-201ENST00000298173 PPRC1Q5VV67 1664 aaKnown RBP36.66■■■■□ 3.46
GTF2A1-201ENST00000298173 AFAP1Q8N556 730 aa36.64■■■■□ 3.46
GTF2A1-201ENST00000298173 TSPOAP1O95153 1857 aa36.61■■■■□ 3.45
GTF2A1-201ENST00000298173 KDM6BO15054 1643 aa36.59■■■■□ 3.45
GTF2A1-201ENST00000298173 CCER1Q8TC90 406 aaPredicted RBP36.59■■■■□ 3.45
GTF2A1-201ENST00000298173 RTEL1-TNFRSF6BF6WH68 1400 aa36.59■■■■□ 3.45
GTF2A1-201ENST00000298173 DHX57Q6P158 1386 aaKnown RBP36.56■■■■□ 3.44
GTF2A1-201ENST00000298173 PLXNC1O60486 1568 aa36.56■■■■□ 3.44
GTF2A1-201ENST00000298173 TEX14Q8IWB6 1497 aa36.55■■■■□ 3.44
GTF2A1-201ENST00000298173 ZNF518AQ6AHZ1 1483 aa36.54■■■■□ 3.44
GTF2A1-201ENST00000298173 SPAG9O60271 1321 aaKnown RBP36.54■■■■□ 3.44
GTF2A1-201ENST00000298173 KIF15Q9NS87 1388 aa36.53■■■■□ 3.44
GTF2A1-201ENST00000298173 POGZQ7Z3K3 1410 aa36.53■■■■□ 3.44
GTF2A1-201ENST00000298173 ZFYVE16Q7Z3T8 1539 aa36.5■■■■□ 3.43
GTF2A1-201ENST00000298173 ANKRD50Q9ULJ7 1429 aa36.5■■■■□ 3.43
GTF2A1-201ENST00000298173 KDM5CP41229 1560 aa36.5■■■■□ 3.43
GTF2A1-201ENST00000298173 INO80Q9ULG1 1556 aaPredicted RBP36.5■■■■□ 3.43
GTF2A1-201ENST00000298173 DENND4BO75064 1496 aaPredicted RBP36.49■■■■□ 3.43
GTF2A1-201ENST00000298173 ACIN1Q9UKV3 1341 aaKnown RBP36.48■■■■□ 3.43
GTF2A1-201ENST00000298173 ATP7AQ04656 1500 aa36.45■■■■□ 3.43
GTF2A1-201ENST00000298173 RICTORQ6R327 1708 aa36.44■■■■□ 3.42
GTF2A1-201ENST00000298173 KIDINS220Q9ULH0 1771 aa36.42■■■■□ 3.42
GTF2A1-201ENST00000298173 MLH3Q9UHC1 1453 aa36.42■■■■□ 3.42
GTF2A1-201ENST00000298173 DUOX2Q9NRD8 1548 aa36.41■■■■□ 3.42
GTF2A1-201ENST00000298173 RAPGEF3O95398 923 aa36.41■■■■□ 3.42
GTF2A1-201ENST00000298173 CLSPNQ9HAW4 1339 aa36.36■■■■□ 3.41
GTF2A1-201ENST00000298173 FRMPD1Q5SYB0 1578 aa36.35■■■■□ 3.41
GTF2A1-201ENST00000298173 HECW2Q9P2P5 1572 aa36.34■■■■□ 3.41
GTF2A1-201ENST00000298173 ERBINQ96RT1 1412 aa36.33■■■■□ 3.41
GTF2A1-201ENST00000298173 TRIM52Q96A61 297 aa36.32■■■■□ 3.4
GTF2A1-201ENST00000298173 TRHP20396 242 aaPredicted RBP36.29■■■■□ 3.4
GTF2A1-201ENST00000298173 ZEB1P37275 1124 aaPredicted RBP36.29■■■■□ 3.4
GTF2A1-201ENST00000298173 MYT1LQ9UL68 1186 aa36.28■■■■□ 3.4
GTF2A1-201ENST00000298173 COL17A1Q9UMD9 1497 aaPredicted RBP36.27■■■■□ 3.4
GTF2A1-201ENST00000298173 ZMYM4Q5VZL5 1548 aa36.27■■■■□ 3.4
GTF2A1-201ENST00000298173 DHX29Q7Z478 1369 aaKnown RBP36.26■■■■□ 3.39
GTF2A1-201ENST00000298173 MPHOSPH9Q99550 1183 aa36.23■■■■□ 3.39
GTF2A1-201ENST00000298173 KDM5DQ9BY66 1539 aa36.21■■■■□ 3.39
GTF2A1-201ENST00000298173 PZPP20742 1482 aa36.21■■■■□ 3.39
GTF2A1-201ENST00000298173 ABCA6Q8N139 1617 aa36.21■■■■□ 3.39
GTF2A1-201ENST00000298173 UNC13BO14795 1591 aa36.2■■■■□ 3.38
GTF2A1-201ENST00000298173 MAGI2Q86UL8 1455 aa36.19■■■■□ 3.38
GTF2A1-201ENST00000298173 A2MP01023 1474 aa36.18■■■■□ 3.38
GTF2A1-201ENST00000298173 NUP155O75694 1391 aa36.17■■■■□ 3.38
GTF2A1-201ENST00000298173 DIP2CQ9Y2E4 1556 aa36.16■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms