RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 CYB5RLQ6IPT4 315 aa20.16■□□□□ 0.82
TIMP3-201ENST00000266085 OSCARQ8IYS5 282 aa20.15■□□□□ 0.82
TIMP3-201ENST00000266085 LAS1LQ9Y4W2 734 aaKnown RBP20.15■□□□□ 0.82
TIMP3-201ENST00000266085 AQRO60306 1485 aaKnown RBP eCLIP20.15■□□□□ 0.825e-7■■■□□ 17.6
TIMP3-201ENST00000266085 ANP32BQ92688 251 aaKnown RBP20.14■□□□□ 0.82
TIMP3-201ENST00000266085 SOX12O15370 315 aa20.12■□□□□ 0.81
TIMP3-201ENST00000266085 WASHC2CQ9Y4E1 1318 aa20.12■□□□□ 0.81
TIMP3-201ENST00000266085 ROCK2O75116 1388 aaKnown RBP20.12■□□□□ 0.81
TIMP3-201ENST00000266085 MORC1Q86VD1 984 aa20.11■□□□□ 0.81
TIMP3-201ENST00000266085 CCER2I3L3R5 266 aa20.11■□□□□ 0.81
TIMP3-201ENST00000266085 CFTRP13569 1480 aa20.09■□□□□ 0.81
TIMP3-201ENST00000266085 FTSJ3Q8IY81 847 aaKnown RBP20.09■□□□□ 0.81
TIMP3-201ENST00000266085 NESP48681 1621 aa20.06■□□□□ 0.8
TIMP3-201ENST00000266085 FRAT1Q92837 279 aaPredicted RBP20.05■□□□□ 0.8
TIMP3-201ENST00000266085 NBR1Q14596 966 aa20.04■□□□□ 0.8
TIMP3-201ENST00000266085 ARXQ96QS3 562 aa20.04■□□□□ 0.8
TIMP3-201ENST00000266085 PPP4R2Q9NY27 417 aa20.04■□□□□ 0.8
TIMP3-201ENST00000266085 NUTM2DQ5VT03 806 aaPredicted RBP20.03■□□□□ 0.8
TIMP3-201ENST00000266085 DHX57Q6P158 1386 aaKnown RBP20.02■□□□□ 0.8
TIMP3-201ENST00000266085 HDGFL2Q7Z4V5 671 aaPredicted RBP20.01■□□□□ 0.79
TIMP3-201ENST00000266085 PNNQ9H307 717 aaKnown RBP20.01■□□□□ 0.79
TIMP3-201ENST00000266085 KTN1Q86UP2 1357 aaKnown RBP20■□□□□ 0.79
TIMP3-201ENST00000266085 ZNF644Q9H582 1327 aaPredicted RBP19.98■□□□□ 0.79
TIMP3-201ENST00000266085 BECN1Q14457 450 aa19.98■□□□□ 0.79
TIMP3-201ENST00000266085 DDRGK1Q96HY6 314 aa19.97■□□□□ 0.79
TIMP3-201ENST00000266085 GRIN2BQ13224 1484 aa19.95■□□□□ 0.78
TIMP3-201ENST00000266085 CC2D2AQ9P2K1 1620 aa19.94■□□□□ 0.78
TIMP3-201ENST00000266085 MS4A1P11836 297 aa19.94■□□□□ 0.78
TIMP3-201ENST00000266085 CCDC144AA2RUR9 1427 aa19.93■□□□□ 0.78
TIMP3-201ENST00000266085 SYNJ1O43426 1573 aa19.93■□□□□ 0.78
TIMP3-201ENST00000266085 RALBP1Q15311 655 aa19.92■□□□□ 0.78
TIMP3-201ENST00000266085 CHMP4BQ9H444 224 aaKnown RBP19.92■□□□□ 0.78
TIMP3-201ENST00000266085 TRAK1Q9UPV9 953 aa19.92■□□□□ 0.78
TIMP3-201ENST00000266085 KIF21BO75037 1637 aa19.92■□□□□ 0.78
TIMP3-201ENST00000266085 ST20-MTHFSA0A0A6YYL1 179 aa19.91■□□□□ 0.78
TIMP3-201ENST00000266085 U2AF1L5P0DN76 240 aaPredicted RBP19.91■□□□□ 0.78
TIMP3-201ENST00000266085 U2AF1Q01081 240 aaKnown RBP eCLIP19.91■□□□□ 0.78
TIMP3-201ENST00000266085 PAK3O75914 559 aaPredicted RBP19.91■□□□□ 0.78
TIMP3-201ENST00000266085 EID1Q9Y6B2 187 aa19.91■□□□□ 0.78
TIMP3-201ENST00000266085 EIF3AQ14152 1382 aaKnown RBP19.91■□□□□ 0.78
TIMP3-201ENST00000266085 RGS3P49796 1198 aa19.9■□□□□ 0.78
TIMP3-201ENST00000266085 MYOM3Q5VTT5 1437 aa19.9■□□□□ 0.78
TIMP3-201ENST00000266085 B4GALNT3Q6L9W6 998 aa19.9■□□□□ 0.78
TIMP3-201ENST00000266085 PHLDB1Q86UU1 1377 aa19.9■□□□□ 0.78
TIMP3-201ENST00000266085 HMGXB3Q12766 1538 aa19.9■□□□□ 0.78
TIMP3-201ENST00000266085 FGD6Q6ZV73 1430 aa19.89■□□□□ 0.78
TIMP3-201ENST00000266085 TERF2IPQ9NYB0 399 aa19.86■□□□□ 0.77
TIMP3-201ENST00000266085 TOPBP1Q92547 1522 aa19.86■□□□□ 0.77
TIMP3-201ENST00000266085 FAM69CQ0P6D2 419 aa19.85■□□□□ 0.77
TIMP3-201ENST00000266085 MRC2Q9UBG0 1479 aa19.84■□□□□ 0.77
TIMP3-201ENST00000266085 LRRC9Q6ZRR7 1453 aa19.84■□□□□ 0.77
TIMP3-201ENST00000266085 ARAP1Q96P48 1450 aa19.84■□□□□ 0.77
TIMP3-201ENST00000266085 EIF5BO60841 1220 aaKnown RBP19.84■□□□□ 0.77
TIMP3-201ENST00000266085 CASC1Q6TDU7 716 aa19.84■□□□□ 0.77
TIMP3-201ENST00000266085 POLA1P09884 1462 aaPredicted RBP19.84■□□□□ 0.77
TIMP3-201ENST00000266085 DNAJC5BQ9UF47 199 aa19.83■□□□□ 0.77
TIMP3-201ENST00000266085 CASKIN1Q8WXD9 1431 aa19.83■□□□□ 0.77
TIMP3-201ENST00000266085 NUTM2FA1L443 756 aa19.83■□□□□ 0.77
TIMP3-201ENST00000266085 RTF1Q92541 710 aaKnown RBP19.82■□□□□ 0.76
TIMP3-201ENST00000266085 VGFO15240 615 aaPredicted RBP19.81■□□□□ 0.76
TIMP3-201ENST00000266085 NLRP13Q86W25 1043 aa19.81■□□□□ 0.76
TIMP3-201ENST00000266085 CUX1P39880 1505 aa19.81■□□□□ 0.76
TIMP3-201ENST00000266085 KIF15Q9NS87 1388 aa19.81■□□□□ 0.76
TIMP3-201ENST00000266085 ERICH3Q5RHP9 1530 aa19.8■□□□□ 0.76
TIMP3-201ENST00000266085 PRXQ9BXM0 1461 aa19.8■□□□□ 0.76
TIMP3-201ENST00000266085 NGDNQ8NEJ9 315 aaKnown RBP19.79■□□□□ 0.76
TIMP3-201ENST00000266085 GOLGA6L22H0YM25 854 aa19.78■□□□□ 0.76
TIMP3-201ENST00000266085 PRG4Q92954 1404 aaPredicted RBP19.78■□□□□ 0.76
TIMP3-201ENST00000266085 IFT140Q96RY7 1462 aa19.78■□□□□ 0.76
TIMP3-201ENST00000266085 BICRAQ9NZM4 1560 aa19.77■□□□□ 0.76
TIMP3-201ENST00000266085 AFAP1Q8N556 730 aa19.77■□□□□ 0.76
TIMP3-201ENST00000266085 NCOA2Q15596 1464 aa19.77■□□□□ 0.76
TIMP3-201ENST00000266085 PANK3Q9H999 370 aa19.76■□□□□ 0.75
TIMP3-201ENST00000266085 TOP2BQ02880 1626 aa19.76■□□□□ 0.75
TIMP3-201ENST00000266085 PRDM2Q13029 1718 aa19.75■□□□□ 0.75
TIMP3-201ENST00000266085 ANP32EQ9BTT0 268 aa19.75■□□□□ 0.75
TIMP3-201ENST00000266085 UACAQ9BZF9 1416 aa19.74■□□□□ 0.75
TIMP3-201ENST00000266085 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.74■□□□□ 0.75
TIMP3-201ENST00000266085 NCLP19338 710 aaKnown RBP19.74■□□□□ 0.75
TIMP3-201ENST00000266085 OS9Q13438 667 aaPredicted RBP19.74■□□□□ 0.75
TIMP3-201ENST00000266085 RCAN3Q9UKA8 241 aa19.74■□□□□ 0.75
TIMP3-201ENST00000266085 CSB-PGBD3P0DP91 1061 aa19.73■□□□□ 0.75
TIMP3-201ENST00000266085 ANKRD50Q9ULJ7 1429 aa19.73■□□□□ 0.75
TIMP3-201ENST00000266085 USP47Q96K76 1375 aa19.73■□□□□ 0.75
TIMP3-201ENST00000266085 FYCO1Q9BQS8 1478 aa19.71■□□□□ 0.75
TIMP3-201ENST00000266085 ERICH6BQ5W0A0 696 aa19.71■□□□□ 0.75
TIMP3-201ENST00000266085 CALD1Q05682 793 aaKnown RBP19.7■□□□□ 0.74
TIMP3-201ENST00000266085 CCDC146Q8IYE0 955 aa19.7■□□□□ 0.74
TIMP3-201ENST00000266085 IPO8O15397 1037 aaKnown RBP19.7■□□□□ 0.74
TIMP3-201ENST00000266085 NPHP1O15259 732 aa19.69■□□□□ 0.74
TIMP3-201ENST00000266085 SYNJ2O15056 1496 aa19.69■□□□□ 0.74
TIMP3-201ENST00000266085 MINK1Q8N4C8 1332 aaPredicted RBP19.68■□□□□ 0.74
TIMP3-201ENST00000266085 PRKRIP1Q9H875 184 aaPredicted RBP19.67■□□□□ 0.74
TIMP3-201ENST00000266085 GOLGA2Q08379 1002 aa19.67■□□□□ 0.74
TIMP3-201ENST00000266085 SNAPC4Q5SXM2 1469 aa19.66■□□□□ 0.74
TIMP3-201ENST00000266085 EVC2Q86UK5 1308 aa19.65■□□□□ 0.74
TIMP3-201ENST00000266085 AMPHP49418 695 aa19.65■□□□□ 0.74
TIMP3-201ENST00000266085 DNMBPQ6XZF7 1577 aa19.64■□□□□ 0.74
TIMP3-201ENST00000266085 MYBBP1AQ9BQG0 1328 aaKnown RBP19.64■□□□□ 0.73
TIMP3-201ENST00000266085 LTV1Q96GA3 475 aaPredicted RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms