RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 DCAF8L2P0C7V8 631 aa27.63■■■□□ 2.01
TIMP3-201ENST00000266085 NISCHQ9Y2I1 1504 aa27.46■■□□□ 1.99
TIMP3-201ENST00000266085 SUPT5HO00267 1087 aaKnown RBP26.09■■□□□ 1.77
TIMP3-201ENST00000266085 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
TIMP3-201ENST00000266085 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
TIMP3-201ENST00000266085 FAM9AQ8IZU1 332 aaPredicted RBP24.54■■□□□ 1.52
TIMP3-201ENST00000266085 APLP2Q06481 763 aa24.3■■□□□ 1.48
TIMP3-201ENST00000266085 TRIM41Q8WV44 630 aa24.19■■□□□ 1.46
TIMP3-201ENST00000266085 TTBK1Q5TCY1 1321 aaPredicted RBP24.04■■□□□ 1.44
TIMP3-201ENST00000266085 RANGAP1P46060 587 aaPredicted RBP23.99■■□□□ 1.43
TIMP3-201ENST00000266085 PCGF6Q9BYE7 350 aa23.88■■□□□ 1.41
TIMP3-201ENST00000266085 UBTFP17480 764 aaKnown RBP23.8■■□□□ 1.4
TIMP3-201ENST00000266085 ABCC9O60706 1549 aa23.69■■□□□ 1.38
TIMP3-201ENST00000266085 ATP1B4Q9UN42 357 aaPredicted RBP23.69■■□□□ 1.38
TIMP3-201ENST00000266085 PABPN1Q86U42 306 aaKnown RBP eCLIP23.44■■□□□ 1.34
TIMP3-201ENST00000266085 PELP1Q8IZL8 1130 aaKnown RBP23.43■■□□□ 1.34
TIMP3-201ENST00000266085 CHIC1Q5VXU3 224 aa23.4■■□□□ 1.34
TIMP3-201ENST00000266085 CCER1Q8TC90 406 aaPredicted RBP23.4■■□□□ 1.34
TIMP3-201ENST00000266085 ZEB1P37275 1124 aaPredicted RBP23.39■■□□□ 1.34
TIMP3-201ENST00000266085 PPARGC1BQ86YN6 1023 aaKnown RBP23.34■■□□□ 1.33
TIMP3-201ENST00000266085 LOC105371045A0A1W2PR82 267 aa23.26■■□□□ 1.31
TIMP3-201ENST00000266085 TRIM26Q12899 539 aaPredicted RBP23.03■■□□□ 1.28
TIMP3-201ENST00000266085 CENPBP07199 599 aaPredicted RBP23■■□□□ 1.27
TIMP3-201ENST00000266085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.97■■□□□ 1.27
TIMP3-201ENST00000266085 HNRNPUL2Q1KMD3 747 aaKnown RBP22.97■■□□□ 1.27
TIMP3-201ENST00000266085 ITGAEP38570 1179 aa22.92■■□□□ 1.26
TIMP3-201ENST00000266085 ZCCHC6Q5VYS8 1495 aaKnown RBP22.73■■□□□ 1.23
TIMP3-201ENST00000266085 MYT1LQ9UL68 1186 aa22.7■■□□□ 1.22
TIMP3-201ENST00000266085 HRCP23327 699 aa22.64■■□□□ 1.21
TIMP3-201ENST00000266085 SCRIBQ14160 1630 aa22.61■■□□□ 1.21
TIMP3-201ENST00000266085 YTHDC1Q96MU7 727 aaKnown RBP22.57■■□□□ 1.2
TIMP3-201ENST00000266085 CCDC180Q9P1Z9 1646 aa22.54■■□□□ 1.2
TIMP3-201ENST00000266085 NEFLP07196 543 aa22.49■■□□□ 1.19
TIMP3-201ENST00000266085 FBLN2P98095 1184 aa22.43■■□□□ 1.18
TIMP3-201ENST00000266085 FAM50AQ14320 339 aaKnown RBP22.41■■□□□ 1.18
TIMP3-201ENST00000266085 CSRNP3Q8WYN3 585 aa22.39■■□□□ 1.17
TIMP3-201ENST00000266085 POLR3GLQ9BT43 218 aa22.37■■□□□ 1.17
TIMP3-201ENST00000266085 ERICH6Q7L0X2 663 aa22.33■■□□□ 1.16
TIMP3-201ENST00000266085 P3H3Q8IVL6 736 aa22.24■■□□□ 1.15
TIMP3-201ENST00000266085 CNGB1Q14028 1251 aaPredicted RBP22.18■■□□□ 1.14
TIMP3-201ENST00000266085 TRIM52Q96A61 297 aa22.18■■□□□ 1.14
TIMP3-201ENST00000266085 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
TIMP3-201ENST00000266085 ARID3CA6NKF2 412 aa22.12■■□□□ 1.13
TIMP3-201ENST00000266085 NEUROD1Q13562 356 aa22.06■■□□□ 1.12
TIMP3-201ENST00000266085 DIEXFQ68CQ4 756 aaKnown RBP22.01■■□□□ 1.11
TIMP3-201ENST00000266085 NACADO15069 1562 aa21.97■■□□□ 1.11
TIMP3-201ENST00000266085 RSF1Q96T23 1441 aaPredicted RBP21.96■■□□□ 1.11
TIMP3-201ENST00000266085 SLC4A1APQ9BWU0 796 aaKnown RBP21.93■■□□□ 1.1
TIMP3-201ENST00000266085 ZNF326Q5BKZ1 582 aaKnown RBP21.87■■□□□ 1.09
TIMP3-201ENST00000266085 CDK11AQ9UQ88 783 aaPredicted RBP21.86■■□□□ 1.09
TIMP3-201ENST00000266085 ZNF777Q9ULD5 760 aaPredicted RBP21.85■■□□□ 1.09
TIMP3-201ENST00000266085 DCAF1Q9Y4B6 1507 aa21.69■■□□□ 1.06
TIMP3-201ENST00000266085 BAZ1BQ9UIG0 1483 aaKnown RBP21.68■■□□□ 1.06
TIMP3-201ENST00000266085 CECR2Q9BXF3 1484 aa21.64■■□□□ 1.05
TIMP3-201ENST00000266085 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.05
TIMP3-201ENST00000266085 CHMP7Q8WUX9 453 aaPredicted RBP21.64■■□□□ 1.05
TIMP3-201ENST00000266085 DAXXQ9UER7 740 aaPredicted RBP21.63■■□□□ 1.05
TIMP3-201ENST00000266085 ANP32CO43423 234 aa21.61■■□□□ 1.05
TIMP3-201ENST00000266085 WRNQ14191 1432 aaPredicted RBP eCLIP21.58■■□□□ 1.05
TIMP3-201ENST00000266085 NPM1P06748 294 aaKnown RBP eCLIP21.57■■□□□ 1.04
TIMP3-201ENST00000266085 BAZ1AQ9NRL2 1556 aaPredicted RBP21.55■■□□□ 1.04
TIMP3-201ENST00000266085 CLIP1P30622 1438 aa21.55■■□□□ 1.04
TIMP3-201ENST00000266085 CHIC2Q9UKJ5 165 aa21.51■■□□□ 1.03
TIMP3-201ENST00000266085 EEA1Q15075 1411 aa21.49■■□□□ 1.03
TIMP3-201ENST00000266085 MTUS2Q5JR59 1369 aa21.48■■□□□ 1.03
TIMP3-201ENST00000266085 MYO15BQ96JP2 1530 aa21.45■■□□□ 1.02
TIMP3-201ENST00000266085 BCANQ96GW7 911 aa21.44■■□□□ 1.02
TIMP3-201ENST00000266085 MYT1Q01538 1121 aa21.41■■□□□ 1.02
TIMP3-201ENST00000266085 TONSLQ96HA7 1378 aa21.4■■□□□ 1.02
TIMP3-201ENST00000266085 GOLGA3Q08378 1498 aa21.39■■□□□ 1.02
TIMP3-201ENST00000266085 KIF27Q86VH2 1401 aa21.39■■□□□ 1.01
TIMP3-201ENST00000266085 CLSPNQ9HAW4 1339 aa21.39■■□□□ 1.01
TIMP3-201ENST00000266085 TSPY4P0CV99 314 aa21.38■■□□□ 1.01
TIMP3-201ENST00000266085 TSPY10P0CW01 314 aa21.38■■□□□ 1.01
TIMP3-201ENST00000266085 ESF1Q9H501 851 aaKnown RBP21.38■■□□□ 1.01
TIMP3-201ENST00000266085 CEP162Q5TB80 1403 aa21.37■■□□□ 1.01
TIMP3-201ENST00000266085 CHGAP10645 457 aaKnown RBP21.36■■□□□ 1.01
TIMP3-201ENST00000266085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.34■■□□□ 1.01
TIMP3-201ENST00000266085 GTF3C3Q9Y5Q9 886 aa21.34■■□□□ 1.01
TIMP3-201ENST00000266085 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
TIMP3-201ENST00000266085 KCNH8Q96L42 1107 aa21.26■□□□□ 0.99
TIMP3-201ENST00000266085 STAG3Q9UJ98 1225 aa21.26■□□□□ 0.99
TIMP3-201ENST00000266085 TNIKQ9UKE5 1360 aa21.26■□□□□ 0.99
TIMP3-201ENST00000266085 PLEKHD1A6NEE1 506 aa21.25■□□□□ 0.99
TIMP3-201ENST00000266085 CEP164Q9UPV0 1460 aa21.24■□□□□ 0.99
TIMP3-201ENST00000266085 ERCC6Q03468 1493 aa21.23■□□□□ 0.99
TIMP3-201ENST00000266085 PLPPR3Q6T4P5 718 aa21.22■□□□□ 0.99
TIMP3-201ENST00000266085 RRP7BPQ9NSQ0 103 aa21.22■□□□□ 0.99
TIMP3-201ENST00000266085 DDX10Q13206 875 aaKnown RBP21.18■□□□□ 0.98
TIMP3-201ENST00000266085 CCDC88BA6NC98 1476 aa21.17■□□□□ 0.98
TIMP3-201ENST00000266085 SOGA1O94964 1423 aa21.15■□□□□ 0.98
TIMP3-201ENST00000266085 NEFMP07197 916 aa21.15■□□□□ 0.98
TIMP3-201ENST00000266085 KDM2AQ9Y2K7 1162 aa21.13■□□□□ 0.97
TIMP3-201ENST00000266085 ACIN1Q9UKV3 1341 aaKnown RBP21.13■□□□□ 0.97
TIMP3-201ENST00000266085 CUX2O14529 1486 aa21.11■□□□□ 0.97
TIMP3-201ENST00000266085 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
TIMP3-201ENST00000266085 CFDP1Q9UEE9 299 aaPredicted RBP21.09■□□□□ 0.97
TIMP3-201ENST00000266085 RTL5Q5HYW3 569 aaPredicted RBP21.08■□□□□ 0.97
TIMP3-201ENST00000266085 SLC24A1O60721 1099 aa21.08■□□□□ 0.97
TIMP3-201ENST00000266085 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms