RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ARID4BQ4LE39 1312 aaPredicted RBP13.79□□□□□ -0.2
CD44-201ENST00000263398 ZRSR1Q15695 479 aaKnown RBP13.79□□□□□ -0.2
CD44-201ENST00000263398 A0A0G2JS52 829 aa13.78□□□□□ -0.2
CD44-201ENST00000263398 NUP155O75694 1391 aa13.76□□□□□ -0.21
CD44-201ENST00000263398 DNTTIP2Q5QJE6 756 aaKnown RBP13.76□□□□□ -0.21
CD44-201ENST00000263398 HSCBQ8IWL3 235 aa13.76□□□□□ -0.21
CD44-201ENST00000263398 L3MBTL2Q969R5 705 aa13.76□□□□□ -0.21
CD44-201ENST00000263398 TCERG1O14776 1098 aaKnown RBP13.76□□□□□ -0.21
CD44-201ENST00000263398 HAP1P54257 671 aaPredicted RBP13.75□□□□□ -0.21
CD44-201ENST00000263398 DEKP35659 375 aaKnown RBP13.75□□□□□ -0.21
CD44-201ENST00000263398 SRPK2P78362 688 aaKnown RBP13.75□□□□□ -0.21
CD44-201ENST00000263398 RTN4Q9NQC3 1192 aaKnown RBP13.75□□□□□ -0.21
CD44-201ENST00000263398 CARMIL2Q6F5E8 1435 aa13.75□□□□□ -0.21
CD44-201ENST00000263398 ANKRD30AQ9BXX3 1397 aa13.75□□□□□ -0.21
CD44-201ENST00000263398 TSHZ2Q9NRE2 1034 aa13.75□□□□□ -0.21
CD44-201ENST00000263398 ROCK2O75116 1388 aaKnown RBP13.74□□□□□ -0.21
CD44-201ENST00000263398 FHOD3Q2V2M9 1422 aa13.73□□□□□ -0.21
CD44-201ENST00000263398 NAP1L5Q96NT1 182 aaPredicted RBP13.73□□□□□ -0.21
CD44-201ENST00000263398 CDK11BP21127 795 aaKnown RBP13.72□□□□□ -0.21
CD44-201ENST00000263398 CFAP44Q96MT7 982 aa13.72□□□□□ -0.21
CD44-201ENST00000263398 PDS5BQ9NTI5 1447 aa13.72□□□□□ -0.21
CD44-201ENST00000263398 DHX57Q6P158 1386 aaKnown RBP13.71□□□□□ -0.21
CD44-201ENST00000263398 IPO8O15397 1037 aaKnown RBP13.71□□□□□ -0.21
CD44-201ENST00000263398 L1TD1Q5T7N2 865 aaKnown RBP13.71□□□□□ -0.21
CD44-201ENST00000263398 NLRP13Q86W25 1043 aa13.71□□□□□ -0.22
CD44-201ENST00000263398 FANCD2Q9BXW9 1451 aa13.7□□□□□ -0.22
CD44-201ENST00000263398 OS9Q13438 667 aaPredicted RBP13.7□□□□□ -0.22
CD44-201ENST00000263398 HDGFP51858 240 aaKnown RBP13.7□□□□□ -0.22
CD44-201ENST00000263398 TPRNQ4KMQ1 711 aa13.7□□□□□ -0.22
CD44-201ENST00000263398 PDE3BQ13370 1112 aa13.69□□□□□ -0.22
CD44-201ENST00000263398 EFCAB2Q5VUJ9 269 aa13.69□□□□□ -0.22
CD44-201ENST00000263398 SAFB2Q14151 953 aaKnown RBP eCLIP13.68□□□□□ -0.22
CD44-201ENST00000263398 LMOD2Q6P5Q4 547 aa13.68□□□□□ -0.22
CD44-201ENST00000263398 KCNJ4P48050 445 aa13.68□□□□□ -0.22
CD44-201ENST00000263398 PLCB2Q00722 1185 aa13.68□□□□□ -0.22
CD44-201ENST00000263398 GGT6Q6P531 493 aa13.68□□□□□ -0.22
CD44-201ENST00000263398 RAD54L2Q9Y4B4 1467 aa13.68□□□□□ -0.22
CD44-201ENST00000263398 U2AF1L5P0DN76 240 aaPredicted RBP13.68□□□□□ -0.22
CD44-201ENST00000263398 U2AF1Q01081 240 aaKnown RBP eCLIP13.68□□□□□ -0.22
CD44-201ENST00000263398 RWDD1Q9H446 243 aaPredicted RBP13.68□□□□□ -0.22
CD44-201ENST00000263398 FGD1P98174 961 aa13.67□□□□□ -0.22
CD44-201ENST00000263398 HDGFL2Q7Z4V5 671 aaPredicted RBP13.66□□□□□ -0.22
CD44-201ENST00000263398 SYNJ1O43426 1573 aa13.66□□□□□ -0.22
CD44-201ENST00000263398 RSPH4AQ5TD94 716 aa13.66□□□□□ -0.22
CD44-201ENST00000263398 MCCP23508 829 aa13.66□□□□□ -0.22
CD44-201ENST00000263398 NCAPD3P42695 1498 aa13.65□□□□□ -0.22
CD44-201ENST00000263398 GOLGA2Q08379 1002 aa13.65□□□□□ -0.22
CD44-201ENST00000263398 CALD1Q05682 793 aaKnown RBP13.65□□□□□ -0.22
CD44-201ENST00000263398 IGF1RP08069 1367 aa13.64□□□□□ -0.23
CD44-201ENST00000263398 IPO9Q96P70 1041 aaKnown RBP13.64□□□□□ -0.23
CD44-201ENST00000263398 FGD5Q6ZNL6 1462 aa13.64□□□□□ -0.23
CD44-201ENST00000263398 DNAJC5BQ9UF47 199 aa13.64□□□□□ -0.23
CD44-201ENST00000263398 BICRAQ9NZM4 1560 aa13.64□□□□□ -0.23
CD44-201ENST00000263398 STK26Q9P289 416 aa13.63□□□□□ -0.23
CD44-201ENST00000263398 GOLGA6L4A6NEF3 574 aa13.63□□□□□ -0.23
CD44-201ENST00000263398 SPRYD3Q8NCJ5 442 aa13.63□□□□□ -0.23
CD44-201ENST00000263398 CCDC18Q5T9S5 1454 aa13.62□□□□□ -0.23
CD44-201ENST00000263398 PMFBP1Q8TBY8 1022 aa13.62□□□□□ -0.23
CD44-201ENST00000263398 RTF1Q92541 710 aaKnown RBP13.62□□□□□ -0.23
CD44-201ENST00000263398 EIF3AQ14152 1382 aaKnown RBP13.62□□□□□ -0.23
CD44-201ENST00000263398 SOX12O15370 315 aa13.61□□□□□ -0.23
CD44-201ENST00000263398 NRDCO43847 1150 aa13.61□□□□□ -0.23
CD44-201ENST00000263398 PHLDB1Q86UU1 1377 aa13.61□□□□□ -0.23
CD44-201ENST00000263398 NESP48681 1621 aa13.61□□□□□ -0.23
CD44-201ENST00000263398 GBP4Q96PP9 640 aa13.61□□□□□ -0.23
CD44-201ENST00000263398 ITPRIPQ8IWB1 547 aa13.6□□□□□ -0.23
CD44-201ENST00000263398 PRKRIP1Q9H875 184 aaPredicted RBP13.6□□□□□ -0.23
CD44-201ENST00000263398 GOLGA6L6A8MZA4 724 aa13.6□□□□□ -0.23
CD44-201ENST00000263398 SLKQ9H2G2 1235 aaPredicted RBP13.6□□□□□ -0.23
CD44-201ENST00000263398 MSNP26038 577 aaKnown RBP13.59□□□□□ -0.23
CD44-201ENST00000263398 HNRNPMP52272 730 aaKnown RBP eCLIP13.59□□□□□ -0.23
CD44-201ENST00000263398 KIF15Q9NS87 1388 aa13.59□□□□□ -0.23
CD44-201ENST00000263398 MLECQ14165 292 aa13.59□□□□□ -0.23
CD44-201ENST00000263398 PTMSP20962 102 aa13.59□□□□□ -0.23
CD44-201ENST00000263398 KIF3BO15066 747 aa13.58□□□□□ -0.23
CD44-201ENST00000263398 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.24
CD44-201ENST00000263398 MYBBP1AQ9BQG0 1328 aaKnown RBP13.58□□□□□ -0.24
CD44-201ENST00000263398 NAP1L2Q9ULW6 460 aaPredicted RBP13.57□□□□□ -0.24
CD44-201ENST00000263398 SMC4Q9NTJ3 1288 aa13.56□□□□□ -0.24
CD44-201ENST00000263398 CENPJQ9HC77 1338 aaPredicted RBP13.56□□□□□ -0.24
CD44-201ENST00000263398 APBB1O00213 710 aa13.56□□□□□ -0.24
CD44-201ENST00000263398 TERF2IPQ9NYB0 399 aa13.56□□□□□ -0.24
CD44-201ENST00000263398 ZBED9Q6R2W3 1325 aa13.55□□□□□ -0.24
CD44-201ENST00000263398 CHAF1AQ13111 956 aaPredicted RBP13.55□□□□□ -0.24
CD44-201ENST00000263398 KIAA1211Q6ZU35 1233 aa13.55□□□□□ -0.24
CD44-201ENST00000263398 SPAG9O60271 1321 aaKnown RBP13.54□□□□□ -0.24
CD44-201ENST00000263398 CHMP4AQ9BY43 222 aa13.54□□□□□ -0.24
CD44-201ENST00000263398 CLUAP1Q96AJ1 413 aa13.54□□□□□ -0.24
CD44-201ENST00000263398 CCDC146Q8IYE0 955 aa13.53□□□□□ -0.24
CD44-201ENST00000263398 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
CD44-201ENST00000263398 GZF1Q9H116 711 aaPredicted RBP13.52□□□□□ -0.24
CD44-201ENST00000263398 TAOK2Q9UL54 1235 aa13.52□□□□□ -0.24
CD44-201ENST00000263398 CFTRP13569 1480 aa13.52□□□□□ -0.24
CD44-201ENST00000263398 KIF21BO75037 1637 aa13.52□□□□□ -0.25
CD44-201ENST00000263398 MFAP1P55081 439 aaKnown RBP13.52□□□□□ -0.25
CD44-201ENST00000263398 PANK3Q9H999 370 aa13.51□□□□□ -0.25
CD44-201ENST00000263398 CCDC144AA2RUR9 1427 aa13.51□□□□□ -0.25
CD44-201ENST00000263398 STK31Q9BXU1 1019 aa13.5□□□□□ -0.25
CD44-201ENST00000263398 HMMRO75330 724 aa13.5□□□□□ -0.25
CD44-201ENST00000263398 AQRO60306 1485 aaKnown RBP eCLIP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms