RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NISCHQ9Y2I1 1504 aa18.57■□□□□ 0.56
CD44-201ENST00000263398 DCAF8L2P0C7V8 631 aa18.45■□□□□ 0.54
CD44-201ENST00000263398 SUPT5HO00267 1087 aaKnown RBP17.79■□□□□ 0.44
CD44-201ENST00000263398 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
CD44-201ENST00000263398 EHMT2Q96KQ7 1210 aa17.02■□□□□ 0.32
CD44-201ENST00000263398 PELP1Q8IZL8 1130 aaKnown RBP16.84■□□□□ 0.29
CD44-201ENST00000263398 APLP2Q06481 763 aa16.81■□□□□ 0.28
CD44-201ENST00000263398 PCGF6Q9BYE7 350 aa16.76■□□□□ 0.27
CD44-201ENST00000263398 FAM9AQ8IZU1 332 aaPredicted RBP16.73■□□□□ 0.27
CD44-201ENST00000263398 ZEB1P37275 1124 aaPredicted RBP16.54■□□□□ 0.24
CD44-201ENST00000263398 TRIM41Q8WV44 630 aa16.5■□□□□ 0.23
CD44-201ENST00000263398 TTBK1Q5TCY1 1321 aaPredicted RBP16.49■□□□□ 0.23
CD44-201ENST00000263398 CENPBP07199 599 aaPredicted RBP16.42■□□□□ 0.22
CD44-201ENST00000263398 CCER1Q8TC90 406 aaPredicted RBP16.38■□□□□ 0.21
CD44-201ENST00000263398 RANGAP1P46060 587 aaPredicted RBP16.26■□□□□ 0.19
CD44-201ENST00000263398 UBTFP17480 764 aaKnown RBP16.24■□□□□ 0.19
CD44-201ENST00000263398 TRIM26Q12899 539 aaPredicted RBP16.11■□□□□ 0.17
CD44-201ENST00000263398 ATP1B4Q9UN42 357 aaPredicted RBP16.09■□□□□ 0.17
CD44-201ENST00000263398 ERICH6Q7L0X2 663 aa16.06■□□□□ 0.16
CD44-201ENST00000263398 HRCP23327 699 aa16.04■□□□□ 0.16
CD44-201ENST00000263398 CHIC1Q5VXU3 224 aa15.99■□□□□ 0.15
CD44-201ENST00000263398 PPARGC1BQ86YN6 1023 aaKnown RBP15.99■□□□□ 0.15
CD44-201ENST00000263398 NEFLP07196 543 aa15.97■□□□□ 0.15
CD44-201ENST00000263398 YTHDC1Q96MU7 727 aaKnown RBP15.96■□□□□ 0.15
CD44-201ENST00000263398 LOC105371045A0A1W2PR82 267 aa15.9■□□□□ 0.14
CD44-201ENST00000263398 MYT1Q01538 1121 aa15.88■□□□□ 0.13
CD44-201ENST00000263398 ABCC9O60706 1549 aa15.79■□□□□ 0.12
CD44-201ENST00000263398 ITGAEP38570 1179 aa15.68■□□□□ 0.1
CD44-201ENST00000263398 HNRNPUL2Q1KMD3 747 aaKnown RBP15.68■□□□□ 0.1
CD44-201ENST00000263398 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.56■□□□□ 0.08
CD44-201ENST00000263398 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
CD44-201ENST00000263398 DIEXFQ68CQ4 756 aaKnown RBP15.53■□□□□ 0.08
CD44-201ENST00000263398 POLR3GLQ9BT43 218 aa15.47■□□□□ 0.07
CD44-201ENST00000263398 ZCCHC6Q5VYS8 1495 aaKnown RBP15.46■□□□□ 0.06
CD44-201ENST00000263398 DAXXQ9UER7 740 aaPredicted RBP15.4■□□□□ 0.06
CD44-201ENST00000263398 MYT1LQ9UL68 1186 aa15.35■□□□□ 0.05
CD44-201ENST00000263398 CNGB1Q14028 1251 aaPredicted RBP15.31■□□□□ 0.04
CD44-201ENST00000263398 FAM50AQ14320 339 aaKnown RBP15.3■□□□□ 0.04
CD44-201ENST00000263398 CCDC180Q9P1Z9 1646 aa15.28■□□□□ 0.04
CD44-201ENST00000263398 SCRIBQ14160 1630 aa15.28■□□□□ 0.04
CD44-201ENST00000263398 GTF3C3Q9Y5Q9 886 aa15.22■□□□□ 0.03
CD44-201ENST00000263398 NEUROD1Q13562 356 aa15.19■□□□□ 0.02
CD44-201ENST00000263398 ZNF316A6NFI3 1004 aaPredicted RBP15.19■□□□□ 0.02
CD44-201ENST00000263398 TRIM52Q96A61 297 aa15.19■□□□□ 0.02
CD44-201ENST00000263398 CSRNP3Q8WYN3 585 aa15.14■□□□□ 0.01
CD44-201ENST00000263398 RTL5Q5HYW3 569 aaPredicted RBP15.14■□□□□ 0.01
CD44-201ENST00000263398 ANP32CO43423 234 aa15.13■□□□□ 0.01
CD44-201ENST00000263398 CLSPNQ9HAW4 1339 aa15.09■□□□□ 0.01
CD44-201ENST00000263398 SLC4A1APQ9BWU0 796 aaKnown RBP15.09■□□□□ 0.01
CD44-201ENST00000263398 ACIN1Q9UKV3 1341 aaKnown RBP15.07■□□□□ 0
CD44-201ENST00000263398 BCANQ96GW7 911 aa15.06■□□□□ 0
CD44-201ENST00000263398 CDK11AQ9UQ88 783 aaPredicted RBP15□□□□□ -0.01
CD44-201ENST00000263398 ZNF326Q5BKZ1 582 aaKnown RBP14.99□□□□□ -0.01
CD44-201ENST00000263398 DCAF1Q9Y4B6 1507 aa14.98□□□□□ -0.01
CD44-201ENST00000263398 P3H3Q8IVL6 736 aa14.91□□□□□ -0.02
CD44-201ENST00000263398 MYO15BQ96JP2 1530 aa14.91□□□□□ -0.02
CD44-201ENST00000263398 RSF1Q96T23 1441 aaPredicted RBP14.86□□□□□ -0.03
CD44-201ENST00000263398 FBLN2P98095 1184 aa14.85□□□□□ -0.03
CD44-201ENST00000263398 TONSLQ96HA7 1378 aa14.78□□□□□ -0.04
CD44-201ENST00000263398 ARID3CA6NKF2 412 aa14.77□□□□□ -0.04
CD44-201ENST00000263398 ZBTB47Q9UFB7 747 aaPredicted RBP14.76□□□□□ -0.05
CD44-201ENST00000263398 CECR2Q9BXF3 1484 aa14.75□□□□□ -0.05
CD44-201ENST00000263398 ANP32AP39687 249 aaKnown RBP14.74□□□□□ -0.05
CD44-201ENST00000263398 CANXP27824 592 aaKnown RBP14.73□□□□□ -0.05
CD44-201ENST00000263398 FKBP8Q14318 412 aa14.73□□□□□ -0.05
CD44-201ENST00000263398 ZNF777Q9ULD5 760 aaPredicted RBP14.73□□□□□ -0.05
CD44-201ENST00000263398 DDX10Q13206 875 aaKnown RBP14.72□□□□□ -0.05
CD44-201ENST00000263398 RB1CC1Q8TDY2 1594 aa14.72□□□□□ -0.05
CD44-201ENST00000263398 HNRNPUQ00839 825 aaKnown RBP eCLIP14.69□□□□□ -0.06
CD44-201ENST00000263398 NEFMP07197 916 aa14.68□□□□□ -0.06
CD44-201ENST00000263398 NACADO15069 1562 aa14.67□□□□□ -0.06
CD44-201ENST00000263398 FAM9BQ8IZU0 186 aa14.61□□□□□ -0.07
CD44-201ENST00000263398 CLIP1P30622 1438 aa14.6□□□□□ -0.07
CD44-201ENST00000263398 NPM2Q86SE8 214 aaKnown RBP14.59□□□□□ -0.07
CD44-201ENST00000263398 MIER1Q8N108 512 aa14.59□□□□□ -0.07
CD44-201ENST00000263398 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
CD44-201ENST00000263398 EEA1Q15075 1411 aa14.56□□□□□ -0.08
CD44-201ENST00000263398 CHIC2Q9UKJ5 165 aa14.55□□□□□ -0.08
CD44-201ENST00000263398 BCL11AQ9H165 835 aa14.54□□□□□ -0.08
CD44-201ENST00000263398 TMC1Q8TDI8 760 aa14.54□□□□□ -0.08
CD44-201ENST00000263398 MTUS2Q5JR59 1369 aa14.53□□□□□ -0.08
CD44-201ENST00000263398 MROH2BQ7Z745 1585 aa14.53□□□□□ -0.08
CD44-201ENST00000263398 SLC24A1O60721 1099 aa14.51□□□□□ -0.09
CD44-201ENST00000263398 CCDC136Q96JN2 1154 aa14.51□□□□□ -0.09
CD44-201ENST00000263398 MRS2Q9HD23 443 aa14.51□□□□□ -0.09
CD44-201ENST00000263398 CEP162Q5TB80 1403 aa14.5□□□□□ -0.09
CD44-201ENST00000263398 GOLGA3Q08378 1498 aa14.48□□□□□ -0.09
CD44-201ENST00000263398 TSPY4P0CV99 314 aa14.48□□□□□ -0.09
CD44-201ENST00000263398 TSPY10P0CW01 314 aa14.48□□□□□ -0.09
CD44-201ENST00000263398 SALL2Q9Y467 1007 aaPredicted RBP14.47□□□□□ -0.09
CD44-201ENST00000263398 UPF2Q9HAU5 1272 aaKnown RBP14.47□□□□□ -0.09
CD44-201ENST00000263398 CHGAP10645 457 aaKnown RBP14.46□□□□□ -0.09
CD44-201ENST00000263398 EIF4G2P78344 907 aaKnown RBP eCLIP14.46□□□□□ -0.1
CD44-201ENST00000263398 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.44□□□□□ -0.1
CD44-201ENST00000263398 HIRIP3Q9BW71 556 aaPredicted RBP14.43□□□□□ -0.1
CD44-201ENST00000263398 BAZ1AQ9NRL2 1556 aaPredicted RBP14.42□□□□□ -0.1
CD44-201ENST00000263398 TNIKQ9UKE5 1360 aa14.42□□□□□ -0.1
CD44-201ENST00000263398 HSP90AA1P07900 732 aaKnown RBP14.41□□□□□ -0.1
CD44-201ENST00000263398 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.41□□□□□ -0.1
CD44-201ENST00000263398 BAZ1BQ9UIG0 1483 aaKnown RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms