RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 KTN1Q86UP2 1357 aaKnown RBP24.44■■□□□ 1.5
PTPRE-201ENST00000254667 RAB3GAP2Q9H2M9 1393 aa24.44■■□□□ 1.5
PTPRE-201ENST00000254667 ATAD2BQ9ULI0 1458 aa24.42■■□□□ 1.5
PTPRE-201ENST00000254667 CCDC18Q5T9S5 1454 aa24.41■■□□□ 1.5
PTPRE-201ENST00000254667 ROCK2O75116 1388 aaKnown RBP24.39■■□□□ 1.5
PTPRE-201ENST00000254667 ZRSR1Q15695 479 aaKnown RBP24.38■■□□□ 1.49
PTPRE-201ENST00000254667 EIF3AQ14152 1382 aaKnown RBP24.38■■□□□ 1.49
PTPRE-201ENST00000254667 OS9Q13438 667 aaPredicted RBP24.37■■□□□ 1.49
PTPRE-201ENST00000254667 RGS3P49796 1198 aa24.37■■□□□ 1.49
PTPRE-201ENST00000254667 TRIM44Q96DX7 344 aaPredicted RBP24.37■■□□□ 1.49
PTPRE-201ENST00000254667 RALBP1Q15311 655 aa24.36■■□□□ 1.49
PTPRE-201ENST00000254667 SAFB2Q14151 953 aaKnown RBP eCLIP24.35■■□□□ 1.49
PTPRE-201ENST00000254667 FHOD3Q2V2M9 1422 aa24.34■■□□□ 1.49
PTPRE-201ENST00000254667 FOXD1Q16676 465 aa24.34■■□□□ 1.49
PTPRE-201ENST00000254667 STK26Q9P289 416 aa24.33■■□□□ 1.49
PTPRE-201ENST00000254667 GLIPR1L2Q4G1C9 344 aa24.33■■□□□ 1.48
PTPRE-201ENST00000254667 RTF1Q92541 710 aaKnown RBP24.32■■□□□ 1.48
PTPRE-201ENST00000254667 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
PTPRE-201ENST00000254667 CALD1Q05682 793 aaKnown RBP24.31■■□□□ 1.48
PTPRE-201ENST00000254667 NPHP1O15259 732 aa24.31■■□□□ 1.48
PTPRE-201ENST00000254667 KIF3BO15066 747 aa24.3■■□□□ 1.48
PTPRE-201ENST00000254667 SPAG9O60271 1321 aaKnown RBP24.3■■□□□ 1.48
PTPRE-201ENST00000254667 CFAP44Q96MT7 982 aa24.3■■□□□ 1.48
PTPRE-201ENST00000254667 JPH4Q96JJ6 628 aa24.3■■□□□ 1.48
PTPRE-201ENST00000254667 IPO8O15397 1037 aaKnown RBP24.27■■□□□ 1.48
PTPRE-201ENST00000254667 SOX12O15370 315 aa24.26■■□□□ 1.47
PTPRE-201ENST00000254667 HNRNPMP52272 730 aaKnown RBP eCLIP24.25■■□□□ 1.47
PTPRE-201ENST00000254667 CHMP4AQ9BY43 222 aa24.23■■□□□ 1.47
PTPRE-201ENST00000254667 FANCD2Q9BXW9 1451 aa24.23■■□□□ 1.47
PTPRE-201ENST00000254667 KCNJ4P48050 445 aa24.23■■□□□ 1.47
PTPRE-201ENST00000254667 FGD1P98174 961 aa24.22■■□□□ 1.47
PTPRE-201ENST00000254667 ERICH6BQ5W0A0 696 aa24.22■■□□□ 1.47
PTPRE-201ENST00000254667 HSP90AB1P08238 724 aaKnown RBP24.21■■□□□ 1.47
PTPRE-201ENST00000254667 B4GALNT3Q6L9W6 998 aa24.21■■□□□ 1.47
PTPRE-201ENST00000254667 TERF2IPQ9NYB0 399 aa24.2■■□□□ 1.46
PTPRE-201ENST00000254667 U2AF1L5P0DN76 240 aaPredicted RBP24.2■■□□□ 1.46
PTPRE-201ENST00000254667 U2AF1Q01081 240 aaKnown RBP eCLIP24.2■■□□□ 1.46
PTPRE-201ENST00000254667 GOLGA2Q08379 1002 aa24.2■■□□□ 1.46
PTPRE-201ENST00000254667 PTMAP06454 111 aaKnown RBP24.19■■□□□ 1.46
PTPRE-201ENST00000254667 WASHC2CQ9Y4E1 1318 aa24.19■■□□□ 1.46
PTPRE-201ENST00000254667 L3MBTL2Q969R5 705 aa24.18■■□□□ 1.46
PTPRE-201ENST00000254667 MCCP23508 829 aa24.17■■□□□ 1.46
PTPRE-201ENST00000254667 EID1Q9Y6B2 187 aa24.16■■□□□ 1.46
PTPRE-201ENST00000254667 NOP58Q9Y2X3 529 aaKnown RBP24.14■■□□□ 1.46
PTPRE-201ENST00000254667 HSCBQ8IWL3 235 aa24.14■■□□□ 1.45
PTPRE-201ENST00000254667 PAK3O75914 559 aaPredicted RBP24.13■■□□□ 1.45
PTPRE-201ENST00000254667 RCAN3Q9UKA8 241 aa24.11■■□□□ 1.45
PTPRE-201ENST00000254667 PTPRGP23470 1445 aa24.1■■□□□ 1.45
PTPRE-201ENST00000254667 UACAQ9BZF9 1416 aa24.09■■□□□ 1.45
PTPRE-201ENST00000254667 NLRP13Q86W25 1043 aa24.08■■□□□ 1.44
PTPRE-201ENST00000254667 CSB-PGBD3P0DP91 1061 aa24.07■■□□□ 1.44
PTPRE-201ENST00000254667 RWDD1Q9H446 243 aaPredicted RBP24.07■■□□□ 1.44
PTPRE-201ENST00000254667 PHLDB1Q86UU1 1377 aa24.07■■□□□ 1.44
PTPRE-201ENST00000254667 CCDC144AA2RUR9 1427 aa24.06■■□□□ 1.44
PTPRE-201ENST00000254667 GOLGA6L6A8MZA4 724 aa24.03■■□□□ 1.44
PTPRE-201ENST00000254667 PDE3BQ13370 1112 aa24.03■■□□□ 1.44
PTPRE-201ENST00000254667 HDAC5Q9UQL6 1122 aa24.03■■□□□ 1.44
PTPRE-201ENST00000254667 NAP1L2Q9ULW6 460 aaPredicted RBP24.03■■□□□ 1.44
PTPRE-201ENST00000254667 LMOD3Q0VAK6 560 aa24.02■■□□□ 1.44
PTPRE-201ENST00000254667 TPRNQ4KMQ1 711 aa24.02■■□□□ 1.44
PTPRE-201ENST00000254667 STK31Q9BXU1 1019 aa24.02■■□□□ 1.44
PTPRE-201ENST00000254667 GOLGA6L4A6NEF3 574 aa24.01■■□□□ 1.43
PTPRE-201ENST00000254667 ITPRIPQ8IWB1 547 aa24■■□□□ 1.43
PTPRE-201ENST00000254667 NGDNQ8NEJ9 315 aaKnown RBP23.98■■□□□ 1.43
PTPRE-201ENST00000254667 KIF15Q9NS87 1388 aa23.98■■□□□ 1.43
PTPRE-201ENST00000254667 DNTTIP2Q5QJE6 756 aaKnown RBP23.98■■□□□ 1.43
PTPRE-201ENST00000254667 PMFBP1Q8TBY8 1022 aa23.98■■□□□ 1.43
PTPRE-201ENST00000254667 NRDCO43847 1150 aa23.98■■□□□ 1.43
PTPRE-201ENST00000254667 KIAA1211Q6ZU35 1233 aa23.97■■□□□ 1.43
PTPRE-201ENST00000254667 GAPVD1Q14C86 1478 aa23.97■■□□□ 1.43
PTPRE-201ENST00000254667 VGFO15240 615 aaPredicted RBP23.95■■□□□ 1.43
PTPRE-201ENST00000254667 RUSC2Q8N2Y8 1516 aa23.95■■□□□ 1.42
PTPRE-201ENST00000254667 FGD5Q6ZNL6 1462 aa23.95■■□□□ 1.42
PTPRE-201ENST00000254667 TCERG1O14776 1098 aaKnown RBP23.94■■□□□ 1.42
PTPRE-201ENST00000254667 DHX57Q6P158 1386 aaKnown RBP23.94■■□□□ 1.42
PTPRE-201ENST00000254667 SMC4Q9NTJ3 1288 aa23.93■■□□□ 1.42
PTPRE-201ENST00000254667 PLCB2Q00722 1185 aa23.92■■□□□ 1.42
PTPRE-201ENST00000254667 HMMRO75330 724 aa23.92■■□□□ 1.42
PTPRE-201ENST00000254667 IGF1RP08069 1367 aa23.92■■□□□ 1.42
PTPRE-201ENST00000254667 TRAK1Q9UPV9 953 aa23.91■■□□□ 1.42
PTPRE-201ENST00000254667 TAOK2Q9UL54 1235 aa23.91■■□□□ 1.42
PTPRE-201ENST00000254667 MYBBP1AQ9BQG0 1328 aaKnown RBP23.91■■□□□ 1.42
PTPRE-201ENST00000254667 AMPHP49418 695 aa23.9■■□□□ 1.42
PTPRE-201ENST00000254667 NUTM2DQ5VT03 806 aaPredicted RBP23.9■■□□□ 1.42
PTPRE-201ENST00000254667 OSCARQ8IYS5 282 aa23.9■■□□□ 1.42
PTPRE-201ENST00000254667 MYOM3Q5VTT5 1437 aa23.89■■□□□ 1.41
PTPRE-201ENST00000254667 ST20-MTHFSA0A0A6YYL1 179 aa23.89■■□□□ 1.41
PTPRE-201ENST00000254667 APBB1O00213 710 aa23.89■■□□□ 1.41
PTPRE-201ENST00000254667 CENPJQ9HC77 1338 aaPredicted RBP23.88■■□□□ 1.41
PTPRE-201ENST00000254667 PTMSP20962 102 aa23.87■■□□□ 1.41
PTPRE-201ENST00000254667 EVC2Q86UK5 1308 aa23.86■■□□□ 1.41
PTPRE-201ENST00000254667 NCAPD3P42695 1498 aa23.86■■□□□ 1.41
PTPRE-201ENST00000254667 GPATCH3Q96I76 525 aa23.86■■□□□ 1.41
PTPRE-201ENST00000254667 L1TD1Q5T7N2 865 aaKnown RBP23.84■■□□□ 1.41
PTPRE-201ENST00000254667 PANK3Q9H999 370 aa23.83■■□□□ 1.41
PTPRE-201ENST00000254667 ZNF330Q9Y3S2 320 aaPredicted RBP23.83■■□□□ 1.41
PTPRE-201ENST00000254667 CGNL1Q0VF96 1302 aa23.83■■□□□ 1.41
PTPRE-201ENST00000254667 CUX1P39880 1505 aa23.82■■□□□ 1.4
PTPRE-201ENST00000254667 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.82■■□□□ 1.4
PTPRE-201ENST00000254667 CCDC146Q8IYE0 955 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms