RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 EIF4G3O43432 1585 aaKnown RBP16.24■□□□□ 0.19
USHBP1-201ENST00000252597 RTN4Q9NQC3 1192 aaKnown RBP16.24■□□□□ 0.19
USHBP1-201ENST00000252597 MAP3K1Q13233 1512 aa16.24■□□□□ 0.19
USHBP1-201ENST00000252597 THOC2Q8NI27 1593 aaKnown RBP16.23■□□□□ 0.19
USHBP1-201ENST00000252597 ANP32AP39687 249 aaKnown RBP16.23■□□□□ 0.19
USHBP1-201ENST00000252597 NBPF8Q3BBV2 869 aa16.22■□□□□ 0.19
USHBP1-201ENST00000252597 IQGAP2Q13576 1575 aa16.22■□□□□ 0.19
USHBP1-201ENST00000252597 SAMD9Q5K651 1589 aa16.22■□□□□ 0.19
USHBP1-201ENST00000252597 NOP58Q9Y2X3 529 aaKnown RBP16.21■□□□□ 0.19
USHBP1-201ENST00000252597 ZNF644Q9H582 1327 aaPredicted RBP16.21■□□□□ 0.19
USHBP1-201ENST00000252597 LAS1LQ9Y4W2 734 aaKnown RBP16.2■□□□□ 0.18
USHBP1-201ENST00000252597 CFAP43Q8NDM7 1665 aa16.19■□□□□ 0.18
USHBP1-201ENST00000252597 FANCIQ9NVI1 1328 aa16.19■□□□□ 0.18
USHBP1-201ENST00000252597 UACAQ9BZF9 1416 aa16.18■□□□□ 0.18
USHBP1-201ENST00000252597 ZBTB47Q9UFB7 747 aaPredicted RBP16.18■□□□□ 0.18
USHBP1-201ENST00000252597 GRIN2AQ12879 1464 aa16.17■□□□□ 0.18
USHBP1-201ENST00000252597 AKNAQ7Z591 1439 aa16.16■□□□□ 0.18
USHBP1-201ENST00000252597 KIF7Q2M1P5 1343 aa16.15■□□□□ 0.18
USHBP1-201ENST00000252597 NAIPQ13075 1403 aa16.15■□□□□ 0.18
USHBP1-201ENST00000252597 KIAA0586Q9BVV6 1533 aa16.12■□□□□ 0.17
USHBP1-201ENST00000252597 NCOA2Q15596 1464 aa16.12■□□□□ 0.17
USHBP1-201ENST00000252597 CCDC7Q96M83 1385 aa16.12■□□□□ 0.17
USHBP1-201ENST00000252597 RGL3Q3MIN7 710 aa16.12■□□□□ 0.17
USHBP1-201ENST00000252597 LRRIQ1Q96JM4 1722 aa16.11■□□□□ 0.17
USHBP1-201ENST00000252597 SKAP1Q86WV1 359 aa16.1■□□□□ 0.17
USHBP1-201ENST00000252597 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
USHBP1-201ENST00000252597 SYNJ2O15056 1496 aa16.1■□□□□ 0.17
USHBP1-201ENST00000252597 ZBED9Q6R2W3 1325 aa16.1■□□□□ 0.17
USHBP1-201ENST00000252597 HFM1A2PYH4 1435 aa16.09■□□□□ 0.17
USHBP1-201ENST00000252597 CDK13Q14004 1512 aaKnown RBP16.09■□□□□ 0.17
USHBP1-201ENST00000252597 CARD11Q9BXL7 1154 aa16.09■□□□□ 0.17
USHBP1-201ENST00000252597 MYOM3Q5VTT5 1437 aa16.08■□□□□ 0.17
USHBP1-201ENST00000252597 JPH4Q96JJ6 628 aa16.08■□□□□ 0.16
USHBP1-201ENST00000252597 CNTLNQ9NXG0 1405 aa16.08■□□□□ 0.16
USHBP1-201ENST00000252597 PKD2Q13563 968 aa16.07■□□□□ 0.16
USHBP1-201ENST00000252597 UGGT2Q9NYU1 1516 aa16.07■□□□□ 0.16
USHBP1-201ENST00000252597 DISP1Q96F81 1524 aa16.06■□□□□ 0.16
USHBP1-201ENST00000252597 PLIN1O60240 522 aa16.06■□□□□ 0.16
USHBP1-201ENST00000252597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.06■□□□□ 0.16
USHBP1-201ENST00000252597 EPRSP07814 1512 aaKnown RBP16.05■□□□□ 0.16
USHBP1-201ENST00000252597 CEP170Q5SW79 1584 aa16.05■□□□□ 0.16
USHBP1-201ENST00000252597 CFDP1Q9UEE9 299 aaPredicted RBP16.05■□□□□ 0.16
USHBP1-201ENST00000252597 NUDCQ9Y266 331 aa16.05■□□□□ 0.16
USHBP1-201ENST00000252597 MAGI3Q5TCQ9 1506 aa16.05■□□□□ 0.16
USHBP1-201ENST00000252597 EXOC6Q8TAG9 804 aa16.04■□□□□ 0.16
USHBP1-201ENST00000252597 CC2D1BQ5T0F9 858 aaKnown RBP16.04■□□□□ 0.16
USHBP1-201ENST00000252597 HECW1Q76N89 1606 aa16.04■□□□□ 0.16
USHBP1-201ENST00000252597 KIAA0556O60303 1618 aa16.03■□□□□ 0.16
USHBP1-201ENST00000252597 DCAF11Q8TEB1 546 aa16.03■□□□□ 0.16
USHBP1-201ENST00000252597 EHBP1L1Q8N3D4 1523 aa16.01■□□□□ 0.15
USHBP1-201ENST00000252597 DAXXQ9UER7 740 aaPredicted RBP16.01■□□□□ 0.15
USHBP1-201ENST00000252597 NEFMP07197 916 aa16■□□□□ 0.15
USHBP1-201ENST00000252597 SUPT6HQ7KZ85 1726 aaKnown RBP16■□□□□ 0.15
USHBP1-201ENST00000252597 ST20-MTHFSA0A0A6YYL1 179 aa16■□□□□ 0.15
USHBP1-201ENST00000252597 IPO9Q96P70 1041 aaKnown RBP16■□□□□ 0.15
USHBP1-201ENST00000252597 SLC4A3P48751 1232 aa15.99■□□□□ 0.15
USHBP1-201ENST00000252597 ERICH6BQ5W0A0 696 aa15.99■□□□□ 0.15
USHBP1-201ENST00000252597 PTPN23Q9H3S7 1636 aa15.99■□□□□ 0.15
USHBP1-201ENST00000252597 PLB1Q6P1J6 1458 aa15.98■□□□□ 0.15
USHBP1-201ENST00000252597 CARMIL2Q6F5E8 1435 aa15.97■□□□□ 0.15
USHBP1-201ENST00000252597 CDCA7LQ96GN5 454 aa15.96■□□□□ 0.15
USHBP1-201ENST00000252597 NUP160Q12769 1436 aa15.96■□□□□ 0.15
USHBP1-201ENST00000252597 NUP153P49790 1475 aaKnown RBP15.96■□□□□ 0.14
USHBP1-201ENST00000252597 USP47Q96K76 1375 aa15.95■□□□□ 0.14
USHBP1-201ENST00000252597 PRKCSHP14314 528 aaPredicted RBP15.94■□□□□ 0.14
USHBP1-201ENST00000252597 IL27Q8NEV9 243 aa15.94■□□□□ 0.14
USHBP1-201ENST00000252597 RCAN3Q9UKA8 241 aa15.94■□□□□ 0.14
USHBP1-201ENST00000252597 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.93■□□□□ 0.14
USHBP1-201ENST00000252597 SENP3Q9H4L4 574 aaPredicted RBP15.93■□□□□ 0.14
USHBP1-201ENST00000252597 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.93■□□□□ 0.14
USHBP1-201ENST00000252597 RAPGEF6Q8TEU7 1601 aa15.92■□□□□ 0.14
USHBP1-201ENST00000252597 PRG4Q92954 1404 aaPredicted RBP15.92■□□□□ 0.14
USHBP1-201ENST00000252597 ARXQ96QS3 562 aa15.91■□□□□ 0.14
USHBP1-201ENST00000252597 PNISRQ8TF01 805 aaKnown RBP15.9■□□□□ 0.14
USHBP1-201ENST00000252597 NCOA1Q15788 1441 aa15.9■□□□□ 0.14
USHBP1-201ENST00000252597 RGS3P49796 1198 aa15.89■□□□□ 0.13
USHBP1-201ENST00000252597 ANO8Q9HCE9 1232 aaPredicted RBP15.89■□□□□ 0.13
USHBP1-201ENST00000252597 MYT1LQ9UL68 1186 aa15.89■□□□□ 0.13
USHBP1-201ENST00000252597 PDE4AP27815 886 aa15.88■□□□□ 0.13
USHBP1-201ENST00000252597 NUP155O75694 1391 aa15.88■□□□□ 0.13
USHBP1-201ENST00000252597 TSPY4P0CV99 314 aa15.88■□□□□ 0.13
USHBP1-201ENST00000252597 TSPY10P0CW01 314 aa15.88■□□□□ 0.13
USHBP1-201ENST00000252597 ARHGEF11O15085 1522 aa15.88■□□□□ 0.13
USHBP1-201ENST00000252597 RRP1P56182 461 aaKnown RBP15.88■□□□□ 0.13
USHBP1-201ENST00000252597 ANKRD30BQ9BXX2 1392 aa15.87■□□□□ 0.13
USHBP1-201ENST00000252597 KDM6BO15054 1643 aa15.86■□□□□ 0.13
USHBP1-201ENST00000252597 PLEKHD1A6NEE1 506 aa15.86■□□□□ 0.13
USHBP1-201ENST00000252597 HNRNPMP52272 730 aaKnown RBP eCLIP15.86■□□□□ 0.13
USHBP1-201ENST00000252597 EIF5BO60841 1220 aaKnown RBP15.85■□□□□ 0.13
USHBP1-201ENST00000252597 PTPRGP23470 1445 aa15.84■□□□□ 0.13
USHBP1-201ENST00000252597 CHD1O14646 1710 aa15.83■□□□□ 0.13
USHBP1-201ENST00000252597 CRBNQ96SW2 442 aa15.83■□□□□ 0.12
USHBP1-201ENST00000252597 TROQ12816 1431 aaPredicted RBP15.82■□□□□ 0.12
USHBP1-201ENST00000252597 NBPF1Q3BBV0 1214 aa15.81■□□□□ 0.12
USHBP1-201ENST00000252597 MIA2Q96PC5 1412 aa15.81■□□□□ 0.12
USHBP1-201ENST00000252597 SMG6Q86US8 1419 aaKnown RBP15.8■□□□□ 0.12
USHBP1-201ENST00000252597 DENND4BO75064 1496 aaPredicted RBP15.8■□□□□ 0.12
USHBP1-201ENST00000252597 TCOF1Q13428 1488 aaKnown RBP15.8■□□□□ 0.12
USHBP1-201ENST00000252597 ROCK2O75116 1388 aaKnown RBP15.79■□□□□ 0.12
USHBP1-201ENST00000252597 KDM5BQ9UGL1 1544 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms