RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Znf692Q3U381 531 aa11.77□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Lmod2Q3UHZ5 550 aa11.77□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Ctage5Q8R311 779 aa11.77□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Plcb2A3KGF7 1181 aa11.75□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Wdhd1P59328 1117 aa11.75□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Pus7B7ZNL8 666 aaKnown RBP11.74□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Riok3Q9DBU3 519 aaKnown RBP11.74□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Usp35M0QWN7 1009 aa11.74□□□□□ -0.53
Clcn3-202ENSMUST00000056508 A0A0U1RNP2 1173 aa11.73□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Erich4Q3UNU4 136 aa11.73□□□□□ -0.53
Clcn3-202ENSMUST00000056508 AdnpQ9Z103 1108 aaKnown RBP11.73□□□□□ -0.53
Clcn3-202ENSMUST00000056508 1700122O11RikJ3QPW6 241 aa11.73□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Stard8Q8K031 1019 aa11.72□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Secisbp2lQ6A098 1086 aaKnown RBP11.72□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Sh3bp5Q9Z131 463 aa11.71□□□□□ -0.53
Clcn3-202ENSMUST00000056508 Nap1l4Q78ZA7 375 aaKnown RBP11.7□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Zfp777B9EKF4 885 aa11.69□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Zfp651E9PZ11 729 aa11.69□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Upf2A2AT37 1269 aaKnown RBP11.69□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Anapc15P60007 132 aa11.67□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Isy1Q69ZQ2 285 aaKnown RBP11.67□□□□□ -0.54
Clcn3-202ENSMUST00000056508 PdiltQ9DAN1 588 aa11.66□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Tcf3P15806 651 aa11.65□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Ccar1Q8CH18 1146 aaKnown RBP11.65□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Ssr1Q9CY50 286 aaKnown RBP11.65□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Stk25Q9Z2W1 426 aa11.65□□□□□ -0.54
Clcn3-202ENSMUST00000056508 L1td1Q587J6 782 aaKnown RBP11.65□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Znf330Q922H9 316 aa11.65□□□□□ -0.54
Clcn3-202ENSMUST00000056508 Rbm27Q5SFM8 1060 aaKnown RBP11.64□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Prpf38aQ4FK66 312 aaKnown RBP11.64□□□□□ -0.55
Clcn3-202ENSMUST00000056508 MycnP03966 462 aaKnown RBP11.63□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Fam43aQ8BUP8 424 aa11.62□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Mtmr7Q9Z2C9 660 aa11.62□□□□□ -0.55
Clcn3-202ENSMUST00000056508 AU015836B2RUM3 263 aa11.62□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Themis2Q91YX0 663 aa11.61□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Hs1bp3Q3TC93 395 aa11.61□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Ppp1r12aQ9DBR7 1029 aaKnown RBP11.61□□□□□ -0.55
Clcn3-202ENSMUST00000056508 TonslQ6NZL6 1363 aa11.61□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Stag3O70576 1240 aa11.61□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Frmd4bQ920B0 1035 aa11.61□□□□□ -0.55
Clcn3-202ENSMUST00000056508 WdpcpQ8C456 722 aa11.6□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Vgll3P85442 326 aa11.6□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Anapc15-psA0A140T8L6 141 aa11.6□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Wdr78E9PYY5 807 aa11.59□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Brpf1B2RRD7 1212 aa11.59□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Sox12Q04890 314 aa11.59□□□□□ -0.55
Clcn3-202ENSMUST00000056508 Zbtb22Q9Z0G7 638 aa11.58□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Rbm26Q6NZN0 1012 aaKnown RBP11.58□□□□□ -0.56
Clcn3-202ENSMUST00000056508 TraipQ8VIG6 470 aa11.58□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Ppp1r1bQ60829 194 aa11.57□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Stk24Q99KH8 431 aa11.57□□□□□ -0.56
Clcn3-202ENSMUST00000056508 CalrP14211 416 aaKnown RBP11.56□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Polr3gQ6NXY9 223 aa11.56□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Exoc8Q6PGF7 716 aa11.56□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Cluap1Q8R3P7 413 aa11.56□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Stk10O55098 966 aa11.55□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Pabpn1Q8CCS6 302 aaKnown RBP11.55□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Rfx1P48377 963 aa11.54□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Mex3cQ05A36 652 aaKnown RBP11.52□□□□□ -0.56
Clcn3-202ENSMUST00000056508 Gm20521D3Z5F7 333 aa11.51□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Erich6bQ9D4S6 220 aa11.51□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Acin1Q9JIX8 1338 aaKnown RBP11.51□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Kdm4aQ8BW72 1064 aa11.5□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Kri1Q8VDQ9 704 aaKnown RBP11.5□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Klhl34A2AI76 644 aa11.49□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Mettl14Q3UIK4 456 aa11.49□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Dhx30Q99PU8 1217 aaKnown RBP11.49□□□□□ -0.57
Clcn3-202ENSMUST00000056508 R3hcc1Q8BSI6 488 aa11.48□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Anp32eP97822 260 aaKnown RBP11.48□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Fgd1P52734 960 aa11.48□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Rbm10Q99KG3 930 aaKnown RBP11.48□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Zcwpw1Q6IR42 630 aa11.47□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Dzip1Q8BMD2 852 aa11.47□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Fnbp4Q6ZQ03 1031 aa11.46□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Sugp2Q8CH09 1067 aa11.46□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Bcl11bQ99PV8 884 aa11.46□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Gm6268A2A3U9 297 aa11.46□□□□□ -0.57
Clcn3-202ENSMUST00000056508 Dnttip2Q8R2M2 758 aaKnown RBP11.46□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Jade2Q6ZQF7 829 aa11.44□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Ak7Q9D2H2 614 aa11.44□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Birc3O08863 600 aa11.43□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Chmp3Q9CQ10 224 aa11.43□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Smarca5Q91ZW3 1051 aaKnown RBP11.43□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Ankrd13aQ80UP5 588 aa11.42□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Znf428Q8C1M2 176 aa11.42□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Erich2E9Q1A6 463 aa11.41□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Ccdc27Q3V036 639 aa11.41□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Zfyve27Q3TXX3 415 aa11.4□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Ccp110Q7TSH4 1004 aa11.4□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Adam1bQ8R534 806 aa11.4□□□□□ -0.58
Clcn3-202ENSMUST00000056508 Mical1Q8VDP3 1048 aa11.39□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Rab11fip3Q8CHD8 1047 aa11.38□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Tnnt3Q9QZ47 272 aa11.38□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Ralbp1Q62172 648 aa11.38□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Ccdc173A0JLY1 547 aa11.37□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Ccdc85cE9Q6B2 420 aa11.37□□□□□ -0.59
Clcn3-202ENSMUST00000056508 DmtnQ9WV69 405 aa11.37□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Bcl2l13P59017 434 aa11.36□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Zc3h15Q3TIV5 426 aaKnown RBP11.36□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Q8C5K5 320 aa11.35□□□□□ -0.59
Retrieved 100 of 22,080 RNA–protein pairs in 22 ms