Protein–RNA interactions for Protein: M0QWN7

Usp35, Ubiquitin-specific peptidase 35, mousemouse

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp35M0QWN7 Gm25239-201ENSMUST00000174915 86 ntBASIC40.41■■■■■ 4.06
Usp35M0QWN7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.4■■■■□ 3.58
Usp35M0QWN7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
Usp35M0QWN7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Usp35M0QWN7 Gm15042-201ENSMUST00000120212 883 ntBASIC35.24■■■■□ 3.23
Usp35M0QWN7 Gm24109-201ENSMUST00000175489 103 ntBASIC35.04■■■■□ 3.2
Usp35M0QWN7 Gm15045-201ENSMUST00000117359 883 ntBASIC34.42■■■■□ 3.1
Usp35M0QWN7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
Usp35M0QWN7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.13■■■■□ 3.05
Usp35M0QWN7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
Usp35M0QWN7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.05
Usp35M0QWN7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34■■■■□ 3.03
Usp35M0QWN7 Gm23366-201ENSMUST00000175022 89 ntBASIC33.76■■■□□ 2.99
Usp35M0QWN7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Usp35M0QWN7 Psd-208ENSMUST00000224556 2034 ntBASIC33.19■■■□□ 2.9
Usp35M0QWN7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Usp35M0QWN7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Usp35M0QWN7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC32.7■■■□□ 2.83
Usp35M0QWN7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.57■■■□□ 2.8
Usp35M0QWN7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.46■■■□□ 2.79
Usp35M0QWN7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.39■■■□□ 2.78
Usp35M0QWN7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Usp35M0QWN7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
Usp35M0QWN7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.31■■■□□ 2.76
Usp35M0QWN7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Usp35M0QWN7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Usp35M0QWN7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Usp35M0QWN7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
Usp35M0QWN7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp35M0QWN7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Usp35M0QWN7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Usp35M0QWN7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.96■■■□□ 2.71
Usp35M0QWN7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Usp35M0QWN7 Gm25238-201ENSMUST00000174914 89 ntBASIC31.91■■■□□ 2.7
Usp35M0QWN7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
Usp35M0QWN7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp35M0QWN7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Usp35M0QWN7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.7■■■□□ 2.66
Usp35M0QWN7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Usp35M0QWN7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Usp35M0QWN7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Usp35M0QWN7 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
Usp35M0QWN7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Usp35M0QWN7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Usp35M0QWN7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Usp35M0QWN7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Usp35M0QWN7 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Usp35M0QWN7 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.1■■■□□ 2.57
Usp35M0QWN7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.07■■■□□ 2.56
Usp35M0QWN7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Usp35M0QWN7 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.96■■■□□ 2.55
Usp35M0QWN7 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
Usp35M0QWN7 Gm27325-201ENSMUST00000175467 74 ntBASIC30.86■■■□□ 2.53
Usp35M0QWN7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Usp35M0QWN7 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.75■■■□□ 2.51
Usp35M0QWN7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Usp35M0QWN7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
Usp35M0QWN7 Gm25262-201ENSMUST00000174934 133 ntBASIC30.65■■■□□ 2.5
Usp35M0QWN7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Usp35M0QWN7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.52■■■□□ 2.48
Usp35M0QWN7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Usp35M0QWN7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Usp35M0QWN7 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp35M0QWN7 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Usp35M0QWN7 Rab21-202ENSMUST00000218831 843 ntBASIC30.38■■■□□ 2.45
Usp35M0QWN7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.35■■■□□ 2.45
Usp35M0QWN7 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.3■■■□□ 2.44
Usp35M0QWN7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.26■■■□□ 2.43
Usp35M0QWN7 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.19■■■□□ 2.42
Usp35M0QWN7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Usp35M0QWN7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Usp35M0QWN7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Usp35M0QWN7 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.06■■■□□ 2.4
Usp35M0QWN7 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
Usp35M0QWN7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.99■■■□□ 2.39
Usp35M0QWN7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
Usp35M0QWN7 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
Usp35M0QWN7 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.93■■■□□ 2.38
Usp35M0QWN7 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.93■■■□□ 2.38
Usp35M0QWN7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.91■■■□□ 2.38
Usp35M0QWN7 Gm26115-201ENSMUST00000175605 87 ntBASIC29.91■■■□□ 2.38
Usp35M0QWN7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Usp35M0QWN7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Usp35M0QWN7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Usp35M0QWN7 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Usp35M0QWN7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
Usp35M0QWN7 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Usp35M0QWN7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.79■■■□□ 2.36
Usp35M0QWN7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Usp35M0QWN7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
Usp35M0QWN7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
Usp35M0QWN7 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Usp35M0QWN7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
Usp35M0QWN7 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Usp35M0QWN7 Gm8109-201ENSMUST00000194076 746 ntBASIC29.71■■■□□ 2.35
Usp35M0QWN7 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.68■■■□□ 2.34
Usp35M0QWN7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Usp35M0QWN7 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29.63■■■□□ 2.33
Usp35M0QWN7 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC29.61■■■□□ 2.33
Usp35M0QWN7 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms