RNA–Protein interactions for RNA: YHR009C

TDA3, Transcript of Putative oxidoreductase involved in late endosome to Golgi transport, yeast

Gene TDA3, Length 1,572 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TDA3	YHR009C	YGL108C	P53139	140 aa		4.1	□□□□□ -1.75
TDA3	YHR009C	YPL107W	Q02873	248 aa		4.1	□□□□□ -1.75
TDA3	YHR009C	HOT1	Q03213	719 aa		4.1	□□□□□ -1.75
TDA3	YHR009C	PRP42	Q03776	544 aa	Known RBP	4.1	□□□□□ -1.75
TDA3	YHR009C	SWF1	Q04629	336 aa		4.1	□□□□□ -1.75
TDA3	YHR009C	VPS54	Q12071	889 aa		4.1	□□□□□ -1.75
TDA3	YHR009C	SPS4	P09937	338 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	RPL1A	P0CX43	217 aa	Known RBP	4.09	□□□□□ -1.75
TDA3	YHR009C	RPL1B	P0CX44	217 aa	Known RBP	4.09	□□□□□ -1.75
TDA3	YHR009C	AFG1	P32317	509 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	SHP1	P34223	423 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	RIX1	P38883	763 aa	Predicted RBP	4.09	□□□□□ -1.75
TDA3	YHR009C	SER3	P40054	469 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	YIL060W	P40519	144 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	HXT9	P40885	567 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	IRC7	P43623	340 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	BPL1	P48445	690 aa	Predicted RBP	4.09	□□□□□ -1.75
TDA3	YHR009C	UBP8	P50102	471 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	EOS1	P53938	366 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	HEF3	P53978	1044 aa	Known RBP	4.09	□□□□□ -1.75
TDA3	YHR009C	ACL4	Q03771	387 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	PFA4	Q12006	378 aa		4.09	□□□□□ -1.75
TDA3	YHR009C	LAS1	P36146	502 aa	Predicted RBP	4.08	□□□□□ -1.76
TDA3	YHR009C	KEL1	P38853	1164 aa	Known RBP	4.08	□□□□□ -1.76
TDA3	YHR009C	YHR210C	P38893	341 aa		4.08	□□□□□ -1.76
TDA3	YHR009C	QRI1	P43123	477 aa	Known RBP	4.08	□□□□□ -1.76
TDA3	YHR009C	SNG1	P46950	547 aa		4.08	□□□□□ -1.76
TDA3	YHR009C	DRN1	P53255	507 aa	Known RBP	4.08	□□□□□ -1.76
TDA3	YHR009C	RPT4	P53549	437 aa	Known RBP	4.08	□□□□□ -1.76
TDA3	YHR009C	DUG3	P53871	357 aa		4.08	□□□□□ -1.76
TDA3	YHR009C	THP1	Q08231	455 aa		4.08	□□□□□ -1.76
TDA3	YHR009C	YOR365C	Q08844	703 aa		4.08	□□□□□ -1.76
TDA3	YHR009C	KEL3	Q08979	651 aa	Predicted RBP	4.08	□□□□□ -1.76
TDA3	YHR009C	RHO2	P06781	192 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	LPD1	P09624	499 aa	Known RBP	4.07	□□□□□ -1.76
TDA3	YHR009C	URA4	P20051	364 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
TDA3	YHR009C	SWH1	P35845	1188 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	YKL023W	P36103	277 aa	Known RBP	4.07	□□□□□ -1.76
TDA3	YHR009C	ARA1	P38115	344 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	ROT2	P38138	954 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	TCM62	P38228	572 aa	Known RBP	4.07	□□□□□ -1.76
TDA3	YHR009C	YMR147W	P40218	223 aa	Known RBP	4.07	□□□□□ -1.76
TDA3	YHR009C	ATP23	P53722	227 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
TDA3	YHR009C	CFT2	Q12102	859 aa	Predicted RBP	4.07	□□□□□ -1.76
TDA3	YHR009C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
TDA3	YHR009C	HIF1	Q12373	385 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	RAV1	P47104	1357 aa		4.07	□□□□□ -1.76
TDA3	YHR009C	CYB2	P00175	591 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	SRV2	P17555	526 aa	Known RBP	4.06	□□□□□ -1.76
TDA3	YHR009C	TIF4631	P39935	952 aa	Known RBP	4.06	□□□□□ -1.76
TDA3	YHR009C	ECM27	P47144	725 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	PKP2	P53170	491 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	SMM1	P53720	384 aa	Known RBP	4.06	□□□□□ -1.76
TDA3	YHR009C	YVH1	Q02256	364 aa	Known RBP	4.06	□□□□□ -1.76
TDA3	YHR009C	ARP10	Q04549	284 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	VAM3	Q12241	283 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	GAL4	P04386	881 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	GPH1	P06738	902 aa	Known RBP	4.06	□□□□□ -1.76
TDA3	YHR009C	SPO7	P18410	259 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	RPB8	P20436	146 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	CLN1	P20437	546 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	CNA1	P23287	553 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	BRF1	P29056	596 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	STV1	P37296	890 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	BNA4	P38169	460 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	POP2	P39008	433 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	PHO90	P39535	881 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	YJL132W	P47014	750 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	ZPR1	P53303	486 aa	Known RBP	4.06	□□□□□ -1.76
TDA3	YHR009C	BUD32	P53323	261 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	SHR3	Q02774	210 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	YMR130W	Q04223	302 aa		4.06	□□□□□ -1.76
TDA3	YHR009C	RAD52	P06778	471 aa	Known RBP	4.05	□□□□□ -1.76
TDA3	YHR009C	PEP5	P12868	1029 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	VMA2	P16140	517 aa	Known RBP	4.05	□□□□□ -1.76
TDA3	YHR009C	URE2	P23202	354 aa	Known RBP	4.05	□□□□□ -1.76
TDA3	YHR009C	GEX1	P25596	615 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	COQ3	P27680	312 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	HIR2	P32480	875 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	MSN2	P33748	704 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	DUG2	P38149	878 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	LAG1	P38703	411 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	OCA1	P50946	238 aa	Predicted RBP	4.05	□□□□□ -1.76
TDA3	YHR009C	TOF1	P53840	1238 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	KTR5	P53966	522 aa	Predicted RBP	4.05	□□□□□ -1.76
TDA3	YHR009C	CAC2	Q04199	468 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	YDL218W	Q07629	317 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	OSW1	Q08692	278 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	RDR1	Q08904	546 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	AEP3	Q12089	606 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	FRE7	Q12333	620 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	RRD2	Q12461	358 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	RRI1	Q12468	440 aa		4.05	□□□□□ -1.76
TDA3	YHR009C	BRR1	Q99177	341 aa	Predicted RBP	4.05	□□□□□ -1.76
TDA3	YHR009C	RIP1	P08067	215 aa		4.04	□□□□□ -1.76
TDA3	YHR009C	YML002W	P0CF17	737 aa		4.04	□□□□□ -1.76
TDA3	YHR009C	ATP10	P18496	279 aa		4.04	□□□□□ -1.76
TDA3	YHR009C	TRX1	P22217	103 aa	Known RBP	4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 557.5 ms