RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W NBP2Q12163 236 aa3.61□□□□□ -1.83
LCB5YLR260W CTF3Q12748 733 aa3.61□□□□□ -1.83
LCB5YLR260W DIF1O13577 133 aa3.6□□□□□ -1.83
LCB5YLR260W TDH1P00360 332 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W PCK1P10963 549 aa3.6□□□□□ -1.83
LCB5YLR260W BIK1P11709 440 aa3.6□□□□□ -1.83
LCB5YLR260W ARO3P14843 370 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W NFS1P25374 497 aa3.6□□□□□ -1.83
LCB5YLR260W RFT1P38206 574 aaPredicted RBP3.6□□□□□ -1.83
LCB5YLR260W NTC20P38302 140 aaPredicted RBP3.6□□□□□ -1.83
LCB5YLR260W RFC3P38629 340 aa3.6□□□□□ -1.83
LCB5YLR260W SSZ1P38788 538 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W GIP4P39732 760 aa3.6□□□□□ -1.83
LCB5YLR260W VMA13P41807 478 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W ALK1P43633 760 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W ZAP1P47043 880 aa3.6□□□□□ -1.83
LCB5YLR260W LIA1P47120 325 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W IMA1P53051 589 aa3.6□□□□□ -1.83
LCB5YLR260W LCL3P53153 274 aa3.6□□□□□ -1.83
LCB5YLR260W SPC98P53540 846 aa3.6□□□□□ -1.83
LCB5YLR260W EGD1Q02642 157 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W SMA1Q02651 245 aa3.6□□□□□ -1.83
LCB5YLR260W RCR2Q03446 210 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W ARR1Q06596 294 aa3.6□□□□□ -1.83
LCB5YLR260W PEX19Q07418 342 aa3.6□□□□□ -1.83
LCB5YLR260W YOR059CQ08448 450 aaKnown RBP3.6□□□□□ -1.83
LCB5YLR260W GLE1Q12315 538 aa3.6□□□□□ -1.83
LCB5YLR260W FAB1P34756 2278 aa3.6□□□□□ -1.83
LCB5YLR260W SPE1P08432 466 aa3.59□□□□□ -1.83
LCB5YLR260W RPL1AP0CX43 217 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W RPL1BP0CX44 217 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W ASP3-2P0CX77 362 aa3.59□□□□□ -1.83
LCB5YLR260W ASP3-3P0CX78 362 aa3.59□□□□□ -1.83
LCB5YLR260W ASP3-4P0CX79 362 aa3.59□□□□□ -1.83
LCB5YLR260W ASP3-1P0CZ17 362 aa3.59□□□□□ -1.83
LCB5YLR260W UNG1P12887 359 aa3.59□□□□□ -1.83
LCB5YLR260W CDC42P19073 191 aa3.59□□□□□ -1.83
LCB5YLR260W IME1P21190 360 aa3.59□□□□□ -1.83
LCB5YLR260W PRO1P32264 428 aa3.59□□□□□ -1.83
LCB5YLR260W HMT1P38074 348 aa3.59□□□□□ -1.83
LCB5YLR260W AGP2P38090 596 aa3.59□□□□□ -1.83
LCB5YLR260W STN1P38960 494 aa3.59□□□□□ -1.83
LCB5YLR260W SSP120P39931 234 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W LRO1P40345 661 aa3.59□□□□□ -1.83
LCB5YLR260W UTP18P40362 594 aaPredicted RBP3.59□□□□□ -1.83
LCB5YLR260W SHR5P41912 237 aa3.59□□□□□ -1.83
LCB5YLR260W ROK1P45818 564 aaPredicted RBP3.59□□□□□ -1.83
LCB5YLR260W COG1P53079 417 aa3.59□□□□□ -1.83
LCB5YLR260W YGR054WP53235 642 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W STP1Q00947 519 aa3.59□□□□□ -1.83
LCB5YLR260W UFO1Q04511 668 aa3.59□□□□□ -1.83
LCB5YLR260W MSC3Q05812 728 aa3.59□□□□□ -1.83
LCB5YLR260W RSA3Q05942 220 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W ATG26Q06321 1198 aa3.59□□□□□ -1.83
LCB5YLR260W TSR1Q07381 788 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W DNL4Q08387 944 aaPredicted RBP3.59□□□□□ -1.83
LCB5YLR260W TAF3Q12297 353 aa3.59□□□□□ -1.83
LCB5YLR260W RRD2Q12461 358 aa3.59□□□□□ -1.83
LCB5YLR260W YLR149CQ99296 730 aa3.59□□□□□ -1.83
LCB5YLR260W HAP2P06774 265 aa3.59□□□□□ -1.83
LCB5YLR260W BUD5P25300 642 aaPredicted RBP3.59□□□□□ -1.83
LCB5YLR260W CRM1P30822 1084 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W ARP2P32381 391 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W MUD1P32605 298 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W MGM101P32787 269 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W SKG6P32900 734 aaPredicted RBP3.59□□□□□ -1.83
LCB5YLR260W MSN4P33749 630 aa3.59□□□□□ -1.83
LCB5YLR260W PHO11P35842 467 aa3.59□□□□□ -1.83
LCB5YLR260W ECM4P36156 370 aa3.59□□□□□ -1.83
LCB5YLR260W PXL1P36166 706 aa3.59□□□□□ -1.83
LCB5YLR260W MSG5P38590 489 aa3.59□□□□□ -1.83
LCB5YLR260W PHO12P38693 467 aa3.59□□□□□ -1.83
LCB5YLR260W QNS1P38795 714 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W BEM4P39011 633 aa3.59□□□□□ -1.83
LCB5YLR260W NPP2P39997 493 aa3.59□□□□□ -1.83
LCB5YLR260W RGI2P40188 164 aa3.59□□□□□ -1.83
LCB5YLR260W YIL077CP40508 320 aa3.59□□□□□ -1.83
LCB5YLR260W GCN20P43535 752 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W BST1P43571 1029 aa3.59□□□□□ -1.83
LCB5YLR260W TOS3P43637 560 aa3.59□□□□□ -1.83
LCB5YLR260W SCD6P45978 349 aaKnown RBP RIP-Chip data3.59□□□□□ -1.83not detected
LCB5YLR260W HSH155P49955 971 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W ARI1P53111 347 aaKnown RBP3.59□□□□□ -1.83
LCB5YLR260W SLG1P54867 378 aa3.59□□□□□ -1.83
LCB5YLR260W ACS1Q01574 713 aa3.59□□□□□ -1.83
LCB5YLR260W YMR187CQ03236 431 aa3.59□□□□□ -1.83
LCB5YLR260W MRPL1Q04599 285 aa3.59□□□□□ -1.83
LCB5YLR260W YLR413WQ06689 675 aa3.59□□□□□ -1.83
LCB5YLR260W AAD4Q07747 329 aa3.59□□□□□ -1.83
LCB5YLR260W GPB1Q08886 897 aa3.59□□□□□ -1.83
LCB5YLR260W YOR389WQ08912 624 aa3.59□□□□□ -1.83
LCB5YLR260W SWT1Q12104 458 aa3.59□□□□□ -1.83
LCB5YLR260W RBD2Q12270 262 aa3.59□□□□□ -1.83
LCB5YLR260W YPR053CQ6Q5F3 151 aa3.59□□□□□ -1.83
LCB5YLR260W RPS17AP02407 136 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W PRB1P09232 635 aa3.58□□□□□ -1.84
LCB5YLR260W RPS17BP14127 136 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W CLC1P17891 233 aa3.58□□□□□ -1.84
LCB5YLR260W IMG2P25642 146 aaPredicted RBP3.58□□□□□ -1.84
LCB5YLR260W SLA2P33338 968 aa3.58□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 99.6 ms