RNA–Protein interactions for RNA: snR48

snR48, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR48, Length 113 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR48	snR48	SWA2	Q06677	668 aa		0.85	□□□□□ -2.27
snR48	snR48	YOR387C	Q08910	206 aa		0.85	□□□□□ -2.27
snR48	snR48	NUR1	Q12066	484 aa		0.85	□□□□□ -2.27
snR48	snR48	BAG7	Q12128	409 aa		0.85	□□□□□ -2.27
snR48	snR48	YCL021W-A	Q96VH3	125 aa		0.85	□□□□□ -2.27
snR48	snR48	RPL20A	P0CX23	172 aa	Known RBP	0.84	□□□□□ -2.27
snR48	snR48	RPL20B	P0CX24	172 aa	Predicted RBP	0.84	□□□□□ -2.27
snR48	snR48	KRS1	P15180	591 aa	Known RBP	0.84	□□□□□ -2.27
snR48	snR48	PHO3	P24031	467 aa		0.84	□□□□□ -2.27
snR48	snR48	NAM9	P27929	486 aa		0.84	□□□□□ -2.27
snR48	snR48	SPC110	P32380	944 aa		0.84	□□□□□ -2.27
snR48	snR48	LHS1	P36016	881 aa		0.84	□□□□□ -2.27
snR48	snR48	RRP14	P36080	434 aa	Known RBP	0.84	□□□□□ -2.27
snR48	snR48	NDT80	P38830	627 aa		0.84	□□□□□ -2.27
snR48	snR48	ALG12	P53730	551 aa		0.84	□□□□□ -2.27
snR48	snR48	WSC2	P53832	503 aa		0.84	□□□□□ -2.27
snR48	snR48	STP3	Q05937	343 aa		0.84	□□□□□ -2.27
snR48	snR48	AYT1	Q12226	474 aa		0.84	□□□□□ -2.27
snR48	snR48	HEM2	P05373	342 aa		0.83	□□□□□ -2.28
snR48	snR48	ADH4	P10127	382 aa		0.83	□□□□□ -2.28
snR48	snR48	SEC62	P21825	274 aa		0.83	□□□□□ -2.28
snR48	snR48	YSP3	P25036	478 aa		0.83	□□□□□ -2.28
snR48	snR48	GCD7	P32502	381 aa	Predicted RBP	0.83	□□□□□ -2.28
snR48	snR48	YME1	P32795	747 aa		0.83	□□□□□ -2.28
snR48	snR48	MRX1	P40050	688 aa		0.83	□□□□□ -2.28
snR48	snR48	NIT2	P47016	307 aa		0.83	□□□□□ -2.28
snR48	snR48	PKP2	P53170	491 aa		0.83	□□□□□ -2.28
snR48	snR48	TAM41	P53230	385 aa		0.83	□□□□□ -2.28
snR48	snR48	BTN2	P53286	410 aa		0.83	□□□□□ -2.28
snR48	snR48	DCP2	P53550	970 aa	Known RBP	0.83	□□□□□ -2.28
snR48	snR48	RPM2	Q02773	1202 aa		0.83	□□□□□ -2.28
snR48	snR48	MTG1	Q03151	367 aa	Predicted RBP	0.83	□□□□□ -2.28
snR48	snR48	UTP14	Q04500	899 aa	Known RBP	0.83	□□□□□ -2.28
snR48	snR48	CDC45	Q08032	650 aa		0.83	□□□□□ -2.28
snR48	snR48	PEX15	Q08215	383 aa		0.83	□□□□□ -2.28
snR48	snR48	RDR1	Q08904	546 aa		0.83	□□□□□ -2.28
snR48	snR48	CLB2	P24869	491 aa		0.82	□□□□□ -2.28
snR48	snR48	HEM12	P32347	362 aa	Predicted RBP	0.82	□□□□□ -2.28
snR48	snR48	SDS22	P36047	338 aa		0.82	□□□□□ -2.28
snR48	snR48	SPC34	P36131	295 aa		0.82	□□□□□ -2.28
snR48	snR48	UTH1	P36135	365 aa		0.82	□□□□□ -2.28
snR48	snR48	SWD3	P38123	315 aa		0.82	□□□□□ -2.28
snR48	snR48	SAW1	P39735	261 aa		0.82	□□□□□ -2.28
snR48	snR48	IMA5	P40884	581 aa		0.82	□□□□□ -2.28
snR48	snR48	RRG7	Q08774	242 aa	Predicted RBP	0.82	□□□□□ -2.28
snR48	snR48	PDH1	Q12428	516 aa	Known RBP	0.82	□□□□□ -2.28
snR48	snR48	KAR1	P11927	433 aa		0.81	□□□□□ -2.28
snR48	snR48	CLN3	P13365	580 aa		0.81	□□□□□ -2.28
snR48	snR48	SPT15	P13393	240 aa	Known RBP	0.81	□□□□□ -2.28
snR48	snR48	RER1	P25560	188 aa		0.81	□□□□□ -2.28
snR48	snR48	MRC1	P25588	1096 aa		0.81	□□□□□ -2.28
snR48	snR48	FUN19	P28003	413 aa	Predicted RBP	0.81	□□□□□ -2.28
snR48	snR48	SOF1	P33750	489 aa	Known RBP	0.81	□□□□□ -2.28
snR48	snR48	PAD1	P33751	242 aa	Known RBP RIP-Chip data	0.81	□□□□□ -2.28	not detected
snR48	snR48	YBL059W	P34224	193 aa		0.81	□□□□□ -2.28
snR48	snR48	TUL1	P36096	758 aa		0.81	□□□□□ -2.28
snR48	snR48	YLF2	P38746	405 aa		0.81	□□□□□ -2.28
snR48	snR48	PHO90	P39535	881 aa		0.81	□□□□□ -2.28
snR48	snR48	SWD1	P39706	426 aa		0.81	□□□□□ -2.28
snR48	snR48	NPR2	P39923	615 aa		0.81	□□□□□ -2.28
snR48	snR48	CAB2	P40506	365 aa		0.81	□□□□□ -2.28
snR48	snR48	CTK2	P46962	323 aa		0.81	□□□□□ -2.28
snR48	snR48	HNT3	Q08702	217 aa		0.81	□□□□□ -2.28
snR48	snR48	HRT3	Q12347	344 aa		0.81	□□□□□ -2.28
snR48	snR48	RRP12	Q12754	1228 aa	Known RBP	0.81	□□□□□ -2.28
snR48	snR48	PMR1	P13586	950 aa		0.8	□□□□□ -2.28
snR48	snR48	TYR1	P20049	452 aa		0.8	□□□□□ -2.28
snR48	snR48	YIM1	P28625	365 aa		0.8	□□□□□ -2.28
snR48	snR48	SIP2	P34164	415 aa	Known RBP	0.8	□□□□□ -2.28
snR48	snR48	RFS1	P38234	210 aa	Known RBP	0.8	□□□□□ -2.28
snR48	snR48	NMD2	P38798	1089 aa	Known RBP	0.8	□□□□□ -2.28
snR48	snR48	BUD16	P39988	312 aa		0.8	□□□□□ -2.28
snR48	snR48	YGR210C	P42942	411 aa		0.8	□□□□□ -2.28
snR48	snR48	NNF2	P53253	936 aa		0.8	□□□□□ -2.28
snR48	snR48	SOL4	P53315	255 aa		0.8	□□□□□ -2.28
snR48	snR48	ATG23	Q06671	453 aa		0.8	□□□□□ -2.28
snR48	snR48	CSR1	Q06705	408 aa	Known RBP	0.8	□□□□□ -2.28
snR48	snR48	ARP6	Q12509	438 aa		0.8	□□□□□ -2.28
snR48	snR48	YER078W-A	Q3E7A2	54 aa		0.8	□□□□□ -2.28
snR48	snR48	YML003W	P0CF16	290 aa		0.79	□□□□□ -2.28
snR48	snR48	PET122	P10355	254 aa		0.79	□□□□□ -2.28
snR48	snR48	SRP54	P20424	541 aa	Known RBP	0.79	□□□□□ -2.28
snR48	snR48	ISY1	P21374	235 aa	Predicted RBP	0.79	□□□□□ -2.28
snR48	snR48	VPS17	P32913	551 aa		0.79	□□□□□ -2.28
snR48	snR48	YFR020W	P43600	232 aa		0.79	□□□□□ -2.28
snR48	snR48	ARK1	P53974	638 aa		0.79	□□□□□ -2.28
snR48	snR48	CRN1	Q06440	651 aa		0.79	□□□□□ -2.28
snR48	snR48	VAM6	Q07468	1049 aa		0.79	□□□□□ -2.28
snR48	snR48	TRE2	Q08693	809 aa		0.79	□□□□□ -2.28
snR48	snR48	PCL1	P24867	279 aa		0.78	□□□□□ -2.28
snR48	snR48	LRE1	P25579	583 aa	Known RBP	0.78	□□□□□ -2.28
snR48	snR48	ECM15	P35195	104 aa		0.78	□□□□□ -2.28
snR48	snR48	PMU1	P36069	295 aa		0.78	□□□□□ -2.28
snR48	snR48	ECM10	P39987	644 aa		0.78	□□□□□ -2.28
snR48	snR48	YTA12	P40341	825 aa		0.78	□□□□□ -2.28
snR48	snR48	SNG1	P46950	547 aa		0.78	□□□□□ -2.28
snR48	snR48	SAM50	P53969	484 aa		0.78	□□□□□ -2.28
snR48	snR48	HAL1	Q01766	294 aa		0.78	□□□□□ -2.28
snR48	snR48	YMR087W	Q04299	284 aa		0.78	□□□□□ -2.28
snR48	snR48	SSK1	Q07084	712 aa		0.78	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 61.3 ms