RNA–Protein interactions for RNA: YGR002C

SWC4, Transcript of Component of the Swr1p complex that incorporates Htz1p into chromatin, yeast

Gene SWC4, Length 1,431 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWC4	YGR002C	CDC15	P27636	974 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	RPC37	P36121	282 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	SEC31	P38968	1273 aa	Known RBP	3.15	□□□□□ -1.91
SWC4	YGR002C	ECM10	P39987	644 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	TPA1	P40032	644 aa	Known RBP	3.15	□□□□□ -1.91
SWC4	YGR002C	SEC24	P40482	926 aa	Known RBP	3.15	□□□□□ -1.91
SWC4	YGR002C	IME4	P41833	600 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	YFR020W	P43600	232 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	NNF2	P53253	936 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	SXM1	Q04175	944 aa	Known RBP	3.15	□□□□□ -1.91
SWC4	YGR002C	GEP3	Q08622	556 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	FRE3	Q08905	711 aa		3.15	□□□□□ -1.91
SWC4	YGR002C	CHO1	P08456	276 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	ALY1	P36117	915 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	VPS41	P38959	992 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	FMP10	P40098	244 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	PCI8	P40512	444 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	VPS25	P47142	202 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	KEL2	P50090	882 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	SCW4	P53334	386 aa	Known RBP	3.14	□□□□□ -1.91
SWC4	YGR002C	MEP3	P53390	489 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	RPL15B	P54780	204 aa	Predicted RBP	3.14	□□□□□ -1.91
SWC4	YGR002C	RCO1	Q04779	684 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	PIG1	Q06216	648 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	SGT2	Q12118	346 aa	Known RBP	3.14	□□□□□ -1.91
SWC4	YGR002C	NBP2	Q12163	236 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	YOL087C	Q99247	1116 aa		3.14	□□□□□ -1.91
SWC4	YGR002C	YBR085C-A	O43137	85 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	RAP1	P11938	827 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	MCM10	P32354	571 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	SPC110	P32380	944 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	CBF2	P32504	956 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	ESL2	P36168	1195 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	GND1	P38720	489 aa	Known RBP	3.13	□□□□□ -1.91
SWC4	YGR002C	TOM71	P38825	639 aa	Known RBP	3.13	□□□□□ -1.91
SWC4	YGR002C	YJR061W	P40355	935 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	DPH1	P40487	425 aa	Known RBP	3.13	□□□□□ -1.91
SWC4	YGR002C	YIR016W	P40572	265 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	CTK2	P46962	323 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	UBP8	P50102	471 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	YNL247W	P53852	767 aa	Known RBP	3.13	□□□□□ -1.91
SWC4	YGR002C	EAF7	P53911	425 aa	Known RBP	3.13	□□□□□ -1.91
SWC4	YGR002C	VTC3	Q02725	835 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	ENT4	Q07872	247 aa		3.13	□□□□□ -1.91
SWC4	YGR002C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
SWC4	YGR002C	HXK2	P04807	486 aa	Known RBP	3.12	□□□□□ -1.91
SWC4	YGR002C	RPL42A	P0CX27	106 aa	Known RBP	3.12	□□□□□ -1.91
SWC4	YGR002C	RPL42B	P0CX28	106 aa	Known RBP	3.12	□□□□□ -1.91
SWC4	YGR002C	ASK1	P35734	292 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	SPC97	P38863	823 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	VID27	P40157	782 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	SLZ1	P40167	298 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	SRB7	P47822	140 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	YTP1	P53584	459 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	BNI5	P53890	448 aa	Known RBP	3.12	□□□□□ -1.91
SWC4	YGR002C	MUB1	Q03162	620 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	SPC19	Q03954	165 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	MRPL1	Q04599	285 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	SWF1	Q04629	336 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	SKG3	Q06315	1026 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	YOL159C	Q08300	171 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	APC5	Q08683	685 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	YLR112W	Q12130	139 aa		3.12	□□□□□ -1.91
SWC4	YGR002C	FUM1	P08417	488 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	AIM17	P23180	465 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	TKL1	P23254	680 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	STE50	P25344	346 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	YCP4	P25349	247 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	YKL100C	P34248	587 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	PEX5	P35056	612 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	YEL068C	P39977	110 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	VRG4	P40107	337 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	SEC9	P40357	651 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	LYS14	P40971	790 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	MDV1	P47025	714 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	RPS7B	P48164	190 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	BSC5	P53755	489 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	ASI1	P54074	624 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	HEL2	Q05580	639 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	VIP1	Q06685	1146 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	RIX7	Q07844	837 aa	Known RBP	3.11	□□□□□ -1.91
SWC4	YGR002C	ATX2	Q12067	313 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	GLE1	Q12315	538 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	CEX1	Q12453	761 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	SKM1	Q12469	655 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	RTP1	Q12751	981 aa		3.11	□□□□□ -1.91
SWC4	YGR002C	RAD51	P25454	400 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	MGM1	P32266	881 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	SAC1	P32368	623 aa	Known RBP	3.1	□□□□□ -1.91
SWC4	YGR002C	EFB1	P32471	206 aa	Known RBP	3.1	□□□□□ -1.91
SWC4	YGR002C	ANP1	P32629	500 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	NFU1	P32860	256 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	RFC1	P38630	861 aa	Known RBP	3.1	□□□□□ -1.91
SWC4	YGR002C	LYS20	P48570	428 aa	Known RBP	3.1	□□□□□ -1.91
SWC4	YGR002C	GPI8	P49018	411 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	SGF73	P53165	657 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	IST1	P53843	298 aa	Predicted RBP	3.1	□□□□□ -1.91
SWC4	YGR002C	INN1	P53901	409 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	IZH1	Q03419	316 aa		3.1	□□□□□ -1.91
SWC4	YGR002C	GRX3	Q03835	250 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 61.1 ms