RNA–Protein interactions for RNA: ENSMUST00000113707.8

Tpm1-216, Transcript of Tropomyosin alpha-1 chain, mousemouse

TSL 1 (best) BASIC

Gene Tpm1, Length 1,898 nt, Biotype protein coding, Subcellular localisation Axon .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1-216ENSMUST00000113707 Krtap3-1A2A591 98 aa12.85□□□□□ -0.35
Tpm1-216ENSMUST00000113707 Gm10382Q3V0T5 144 aa12.76□□□□□ -0.37
Tpm1-216ENSMUST00000113707 Gm3646F6S692 53 aa12.72□□□□□ -0.37
Tpm1-216ENSMUST00000113707 Krtap13-1Q8K198 168 aa12.71□□□□□ -0.37
Tpm1-216ENSMUST00000113707 Herc1E9PZP8 4859 aa12.67□□□□□ -0.38
Tpm1-216ENSMUST00000113707 Gm9955Q8CEJ8 102 aa12.6□□□□□ -0.39
Tpm1-216ENSMUST00000113707 Ndufs5Q99LY9 106 aa12.59□□□□□ -0.39
Tpm1-216ENSMUST00000113707 Fam229aB2KGE5 128 aa12.55□□□□□ -0.4
Tpm1-216ENSMUST00000113707 Krtap16-3Q8C1I6 86 aa12.52□□□□□ -0.41
Tpm1-216ENSMUST00000113707 Krtap1-5A2A590 122 aa12.51□□□□□ -0.41
Tpm1-216ENSMUST00000113707 Gm20537G3UYK7 97 aa12.51□□□□□ -0.41
Tpm1-216ENSMUST00000113707 Krtap19-1Q925H2 87 aa12.42□□□□□ -0.42
Tpm1-216ENSMUST00000113707 Gm18596A0A1W2P860 280 aa12.39□□□□□ -0.43
Tpm1-216ENSMUST00000113707 Crct1Q6PAI5 102 aa12.39□□□□□ -0.43
Tpm1-216ENSMUST00000113707 BC029722A0A0N4SW31 51 aa12.37□□□□□ -0.43
Tpm1-216ENSMUST00000113707 Krtap19-3Q925H6 87 aa12.34□□□□□ -0.43
Tpm1-216ENSMUST00000113707 Gm10318A0A1W2P728 225 aa12.25□□□□□ -0.45
Tpm1-216ENSMUST00000113707 Gm9789Q8BIG3 52 aa12.25□□□□□ -0.45
Tpm1-216ENSMUST00000113707 Ush2AQ2QI47 5193 aa12.25□□□□□ -0.45
Tpm1-216ENSMUST00000113707 Prm1P02319 51 aa12.21□□□□□ -0.45
Tpm1-216ENSMUST00000113707 Pla2g10Q9QXX3 151 aa12.21□□□□□ -0.46
Tpm1-216ENSMUST00000113707 Gm3880A0A1B0GSB3 72 aa12.19□□□□□ -0.46
Tpm1-216ENSMUST00000113707 Hmcn2A2AJ76 5100 aa12.17□□□□□ -0.46
Tpm1-216ENSMUST00000113707 Krtap1-3A2A588 173 aa12.16□□□□□ -0.46
Tpm1-216ENSMUST00000113707 Gm7735D3YX18 52 aa12.1□□□□□ -0.47
Tpm1-216ENSMUST00000113707 Gm19402J3QJV4 266 aa12.1□□□□□ -0.47
Tpm1-216ENSMUST00000113707 1700042G07RikB1AUF7 90 aa12.05□□□□□ -0.48
Tpm1-216ENSMUST00000113707 Gm19426M0QWC7 77 aa12.01□□□□□ -0.49
Tpm1-216ENSMUST00000113707 Gm17402F6Z0L5 76 aa11.91□□□□□ -0.5
Tpm1-216ENSMUST00000113707 Ubr4A2AN08 5180 aa11.9□□□□□ -0.5
Tpm1-216ENSMUST00000113707 4932415D10RikA0A1W2P6U8 4986 aa11.88□□□□□ -0.51
Tpm1-216ENSMUST00000113707 B930094E09RikQ8C4T2 136 aa11.87□□□□□ -0.51
Tpm1-216ENSMUST00000113707 ZanO88799 5376 aa11.85□□□□□ -0.51
Tpm1-216ENSMUST00000113707 Krtap1-4Q3V2D6 188 aa11.83□□□□□ -0.52
Tpm1-216ENSMUST00000113707 LorP18165 486 aa11.8□□□□□ -0.52
Tpm1-216ENSMUST00000113707 Spink7Q6IE32 76 aa11.75□□□□□ -0.53
Tpm1-216ENSMUST00000113707 Gm12216A0A1W2P827 62 aa11.74□□□□□ -0.53
Tpm1-216ENSMUST00000113707 CriptO70333 101 aa11.7□□□□□ -0.54
Tpm1-216ENSMUST00000113707 Sprr2a3Q4KL71 83 aa11.65□□□□□ -0.54
Tpm1-216ENSMUST00000113707 Sprr2a1Q9CQK8 83 aa11.65□□□□□ -0.54
Tpm1-216ENSMUST00000113707 Romo1P60603 79 aa11.64□□□□□ -0.55
Tpm1-216ENSMUST00000113707 Rnf213E9Q555 5152 aaKnown RBP11.59□□□□□ -0.55
Tpm1-216ENSMUST00000113707 Fat4Q2PZL6 4981 aa11.57□□□□□ -0.56
Tpm1-216ENSMUST00000113707 Krtap12-1Q9Z287 130 aa11.38□□□□□ -0.59
Tpm1-216ENSMUST00000113707 Gm21887J3QQ04 176 aa11.38□□□□□ -0.59
Tpm1-216ENSMUST00000113707 Lce1jD3YUU5 139 aa11.36□□□□□ -0.59
Tpm1-216ENSMUST00000113707 Krtap19-9aF8WH65 55 aa11.27□□□□□ -0.6
Tpm1-216ENSMUST00000113707 SspoQ8CG65 4998 aa11.2□□□□□ -0.62
Tpm1-216ENSMUST00000113707 Prm2P07978 107 aa11.04□□□□□ -0.64
Tpm1-216ENSMUST00000113707 Gm19668J3QMD1 248 aa11.02□□□□□ -0.64
Tpm1-216ENSMUST00000113707 Camk2n1Q6QWF9 78 aa10.98□□□□□ -0.65
Tpm1-216ENSMUST00000113707 Krtap19-2Q925I0 141 aa10.98□□□□□ -0.65
Tpm1-216ENSMUST00000113707 Gm10061D3Z714 54 aa10.96□□□□□ -0.65
Tpm1-216ENSMUST00000113707 Krtap17-1A2A5X6 109 aa10.92□□□□□ -0.66
Tpm1-216ENSMUST00000113707 Krtap9-5A2A5X3 358 aa10.91□□□□□ -0.66
Tpm1-216ENSMUST00000113707 Lce1iQ9D6P5 149 aa10.68□□□□□ -0.7
Tpm1-216ENSMUST00000113707 Krtap7-1Q9D3I6 87 aa10.61□□□□□ -0.71
Tpm1-216ENSMUST00000113707 Lce1a2Q9D1K4 149 aa10.55□□□□□ -0.72
Tpm1-216ENSMUST00000113707 Gm40193A0A1B0GT39 78 aa10.55□□□□□ -0.72
Tpm1-216ENSMUST00000113707 Muc5bE9Q5I3 4800 aa10.46□□□□□ -0.74
Tpm1-216ENSMUST00000113707 Krtap8-1O08633 61 aa10.41□□□□□ -0.74
Tpm1-216ENSMUST00000113707 Mp68P56379 58 aa10.37□□□□□ -0.75
Tpm1-216ENSMUST00000113707 Gm11569B1AQB1 180 aa10.36□□□□□ -0.75
Tpm1-216ENSMUST00000113707 Gm6358A0A087WPH4 74 aa10.36□□□□□ -0.75
Tpm1-216ENSMUST00000113707 Krtap19-9bQ99NG9 58 aa10.32□□□□□ -0.76
Tpm1-216ENSMUST00000113707 Mt2P02798 61 aa10.16□□□□□ -0.78
Tpm1-216ENSMUST00000113707 Tnp1P10856 55 aa10.06□□□□□ -0.8
Tpm1-216ENSMUST00000113707 Krtap9-3Q3V2C1 136 aa9.7□□□□□ -0.86
Tpm1-216ENSMUST00000113707 Lce1hQ9D6R3 140 aa9.64□□□□□ -0.87
Tpm1-216ENSMUST00000113707 Krtap22-2J3QNX6 67 aa9.62□□□□□ -0.87
Tpm1-216ENSMUST00000113707 Gm20538F6Z9R1 75 aa9.57□□□□□ -0.88
Tpm1-216ENSMUST00000113707 2310046K23RikA0A0A6YVW6 87 aa9.53□□□□□ -0.88
Tpm1-216ENSMUST00000113707 Mdn1A2ANY6 5589 aaKnown RBP9.5□□□□□ -0.89
Tpm1-216ENSMUST00000113707 Gm11555B1AQ89 175 aa9.48□□□□□ -0.89
Tpm1-216ENSMUST00000113707 Lce1gQ9D195 139 aa9.45□□□□□ -0.9
Tpm1-216ENSMUST00000113707 Krtap4-6Q3V4B7 195 aa9.42□□□□□ -0.9
Tpm1-216ENSMUST00000113707 Krtap4-2B1AQ85 167 aa9.38□□□□□ -0.91
Tpm1-216ENSMUST00000113707 Ndufaf8A2AMZ4 74 aa9.27□□□□□ -0.93
Tpm1-216ENSMUST00000113707 Krtap4-1Q3UUY3 169 aa9.24□□□□□ -0.93
Tpm1-216ENSMUST00000113707 Gm11596B1AQB0 205 aa9.19□□□□□ -0.94
Tpm1-216ENSMUST00000113707 Gm11562A0PK51 136 aa9.14□□□□□ -0.95
Tpm1-216ENSMUST00000113707 Gm11564A2A4L9 201 aa8.97□□□□□ -0.97
Tpm1-216ENSMUST00000113707 Gm11563B1AQ90 168 aa8.97□□□□□ -0.97
Tpm1-216ENSMUST00000113707 Gm11595B1AQA7 289 aa8.97□□□□□ -0.97
Tpm1-216ENSMUST00000113707 Krtap4-8B1AQA8 209 aa8.97□□□□□ -0.97
Tpm1-216ENSMUST00000113707 Gm10272F7CZ33 110 aa8.96□□□□□ -0.97
Tpm1-216ENSMUST00000113707 Syne2Q6ZWQ0 6874 aaKnown RBP8.91□□□□□ -0.98
Tpm1-216ENSMUST00000113707 Mt4P47945 62 aa8.77□□□□□ -1.01
Tpm1-216ENSMUST00000113707 Krtap4-9B1AQA9 244 aa8.74□□□□□ -1.01
Tpm1-216ENSMUST00000113707 Lce1bQ9D149 137 aa8.72□□□□□ -1.01
Tpm1-216ENSMUST00000113707 Gm11938Q9D3H4 131 aa8.63□□□□□ -1.03
Tpm1-216ENSMUST00000113707 Gm38119A0A0A6YX29 146 aa8.57□□□□□ -1.04
Tpm1-216ENSMUST00000113707 Sprr2gO70558 76 aa8.57□□□□□ -1.04
Tpm1-216ENSMUST00000113707 Sprr2dO70555 85 aa8.51□□□□□ -1.05
Tpm1-216ENSMUST00000113707 Lce1dQ9D731 133 aa8.51□□□□□ -1.05
Tpm1-216ENSMUST00000113707 Krtap4-13Q9D7P3 165 aa8.41□□□□□ -1.06
Tpm1-216ENSMUST00000113707 Lce3bQ9CQM7 98 aa8.4□□□□□ -1.07
Tpm1-216ENSMUST00000113707 2300003K06RikA2A4M0 262 aa8.34□□□□□ -1.07
Tpm1-216ENSMUST00000113707 Syne1Q6ZWR6 8799 aa8.32□□□□□ -1.08
Tpm1-216ENSMUST00000113707 Sprr2kO70562 68 aa8.32□□□□□ -1.08
Retrieved 100 of 22,080 RNA–protein pairs in 72.1 ms