Protein–RNA interactions for Protein: A0A1B0GSB3

Gm3880, Predicted pseudogene 3880, mousemouse

Predictions only

Length 72 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm3880A0A1B0GSB3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Gm3880A0A1B0GSB3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm3880A0A1B0GSB3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Gm3880A0A1B0GSB3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Gm3880A0A1B0GSB3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Gm3880A0A1B0GSB3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Gm3880A0A1B0GSB3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Gm3880A0A1B0GSB3 Psd-208ENSMUST00000224556 2034 ntBASIC15.55■□□□□ 0.08
Gm3880A0A1B0GSB3 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Gm3880A0A1B0GSB3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Gm3880A0A1B0GSB3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Gm3880A0A1B0GSB3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Gm3880A0A1B0GSB3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Gm3880A0A1B0GSB3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Gm3880A0A1B0GSB3 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC14.95□□□□□ -0.02
Gm3880A0A1B0GSB3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Gm3880A0A1B0GSB3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Gm3880A0A1B0GSB3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Gm3880A0A1B0GSB3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Gm3880A0A1B0GSB3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Gm3880A0A1B0GSB3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Gm3880A0A1B0GSB3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Gm3880A0A1B0GSB3 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Gm3880A0A1B0GSB3 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Gm3880A0A1B0GSB3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Gm3880A0A1B0GSB3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Gm3880A0A1B0GSB3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Gm3880A0A1B0GSB3 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Gm3880A0A1B0GSB3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Gm3880A0A1B0GSB3 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Gm3880A0A1B0GSB3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Gm3880A0A1B0GSB3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Gm3880A0A1B0GSB3 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Gm3880A0A1B0GSB3 Gm42596-201ENSMUST00000196305 1958 ntBASIC14.47□□□□□ -0.09
Gm3880A0A1B0GSB3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Gm3880A0A1B0GSB3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Gm3880A0A1B0GSB3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Gm3880A0A1B0GSB3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Gm3880A0A1B0GSB3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC14.34□□□□□ -0.11
Gm3880A0A1B0GSB3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Gm3880A0A1B0GSB3 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Gm3880A0A1B0GSB3 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Gm3880A0A1B0GSB3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Gm3880A0A1B0GSB3 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Gm3880A0A1B0GSB3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Gm3880A0A1B0GSB3 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Gm3880A0A1B0GSB3 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Gm3880A0A1B0GSB3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Gm3880A0A1B0GSB3 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Gm3880A0A1B0GSB3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Gm3880A0A1B0GSB3 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Gm3880A0A1B0GSB3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Gm3880A0A1B0GSB3 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Gm3880A0A1B0GSB3 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Gm3880A0A1B0GSB3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Gm3880A0A1B0GSB3 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Gm3880A0A1B0GSB3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Gm3880A0A1B0GSB3 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Gm3880A0A1B0GSB3 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Gm3880A0A1B0GSB3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC13.94□□□□□ -0.18
Gm3880A0A1B0GSB3 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Gm3880A0A1B0GSB3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC13.92□□□□□ -0.18
Gm3880A0A1B0GSB3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Gm3880A0A1B0GSB3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Gm3880A0A1B0GSB3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Gm3880A0A1B0GSB3 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Gm3880A0A1B0GSB3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC13.89□□□□□ -0.19
Gm3880A0A1B0GSB3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Gm3880A0A1B0GSB3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Gm3880A0A1B0GSB3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Gm3880A0A1B0GSB3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Gm3880A0A1B0GSB3 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Gm3880A0A1B0GSB3 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Gm3880A0A1B0GSB3 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Gm3880A0A1B0GSB3 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Gm3880A0A1B0GSB3 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Gm3880A0A1B0GSB3 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Gm3880A0A1B0GSB3 Zxda-201ENSMUST00000117281 2621 ntBASIC13.84□□□□□ -0.19
Gm3880A0A1B0GSB3 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Gm3880A0A1B0GSB3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Gm3880A0A1B0GSB3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Gm3880A0A1B0GSB3 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Gm3880A0A1B0GSB3 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
Gm3880A0A1B0GSB3 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Gm3880A0A1B0GSB3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Gm3880A0A1B0GSB3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Gm3880A0A1B0GSB3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Gm3880A0A1B0GSB3 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Gm3880A0A1B0GSB3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Gm3880A0A1B0GSB3 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Gm3880A0A1B0GSB3 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Gm3880A0A1B0GSB3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Gm3880A0A1B0GSB3 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Gm3880A0A1B0GSB3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Gm3880A0A1B0GSB3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Gm3880A0A1B0GSB3 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Gm3880A0A1B0GSB3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Gm3880A0A1B0GSB3 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Gm3880A0A1B0GSB3 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Gm3880A0A1B0GSB3 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms