RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 2310057N15RikQ9D6T8 200 aa11.85□□□□□ -0.51
Upf3a-201ENSMUST00000043767 Cox6b2Q80ZN9 88 aa11.82□□□□□ -0.52
Upf3a-201ENSMUST00000043767 Ush2AQ2QI47 5193 aa11.8□□□□□ -0.52
Upf3a-201ENSMUST00000043767 Gm20537G3UYK7 97 aa11.72□□□□□ -0.53
Upf3a-201ENSMUST00000043767 Sec61bQ9CQS8 96 aaKnown RBP11.72□□□□□ -0.53
Upf3a-201ENSMUST00000043767 Hmcn2A2AJ76 5100 aa11.67□□□□□ -0.54
Upf3a-201ENSMUST00000043767 Gm17416Q30KP4 66 aa11.64□□□□□ -0.55
Upf3a-201ENSMUST00000043767 Ubr4A2AN08 5180 aa11.57□□□□□ -0.56
Upf3a-201ENSMUST00000043767 Gm3880A0A1B0GSB3 72 aa11.55□□□□□ -0.56
Upf3a-201ENSMUST00000043767 Gm9789Q8BIG3 52 aa11.55□□□□□ -0.56
Upf3a-201ENSMUST00000043767 Crct1Q6PAI5 102 aa11.52□□□□□ -0.57
Upf3a-201ENSMUST00000043767 Gm12216A0A1W2P827 62 aa11.51□□□□□ -0.57
Upf3a-201ENSMUST00000043767 Prm1P02319 51 aa11.51□□□□□ -0.57
Upf3a-201ENSMUST00000043767 Gm9955Q8CEJ8 102 aa11.5□□□□□ -0.57
Upf3a-201ENSMUST00000043767 Gm7735D3YX18 52 aa11.47□□□□□ -0.57
Upf3a-201ENSMUST00000043767 Krtap16-3Q8C1I6 86 aa11.4□□□□□ -0.58
Upf3a-201ENSMUST00000043767 Gm10318A0A1W2P728 225 aa11.36□□□□□ -0.59
Upf3a-201ENSMUST00000043767 4932415D10RikA0A1W2P6U8 4986 aa11.34□□□□□ -0.59
Upf3a-201ENSMUST00000043767 Gm17606F6ZL36 78 aa11.33□□□□□ -0.6
Upf3a-201ENSMUST00000043767 2210017I01RikA0A0A6YVV1 95 aa11.32□□□□□ -0.6
Upf3a-201ENSMUST00000043767 Krtap1-3A2A588 173 aa11.31□□□□□ -0.6
Upf3a-201ENSMUST00000043767 Krtap19-1Q925H2 87 aa11.31□□□□□ -0.6
Upf3a-201ENSMUST00000043767 Gm10382Q3V0T5 144 aa11.31□□□□□ -0.6
Upf3a-201ENSMUST00000043767 Krtap13-1Q8K198 168 aa11.3□□□□□ -0.6
Upf3a-201ENSMUST00000043767 ZanO88799 5376 aa11.3□□□□□ -0.6
Upf3a-201ENSMUST00000043767 Krtap19-3Q925H6 87 aa11.28□□□□□ -0.6
Upf3a-201ENSMUST00000043767 Krtap3-1A2A591 98 aa11.2□□□□□ -0.62
Upf3a-201ENSMUST00000043767 Fam229aB2KGE5 128 aa11.2□□□□□ -0.62
Upf3a-201ENSMUST00000043767 Romo1P60603 79 aa11.14□□□□□ -0.63
Upf3a-201ENSMUST00000043767 Krtap1-5A2A590 122 aa11.07□□□□□ -0.64
Upf3a-201ENSMUST00000043767 LorP18165 486 aa11.04□□□□□ -0.64
Upf3a-201ENSMUST00000043767 Gm19402J3QJV4 266 aa11.02□□□□□ -0.64
Upf3a-201ENSMUST00000043767 CriptO70333 101 aa10.99□□□□□ -0.65
Upf3a-201ENSMUST00000043767 Fat4Q2PZL6 4981 aa10.96□□□□□ -0.66
Upf3a-201ENSMUST00000043767 Rnf213E9Q555 5152 aaKnown RBP10.88□□□□□ -0.67
Upf3a-201ENSMUST00000043767 Gm20538F6Z9R1 75 aa10.86□□□□□ -0.67
Upf3a-201ENSMUST00000043767 Mp68P56379 58 aa10.86□□□□□ -0.67
Upf3a-201ENSMUST00000043767 Krtap1-4Q3V2D6 188 aa10.78□□□□□ -0.68
Upf3a-201ENSMUST00000043767 BC029722A0A0N4SW31 51 aa10.72□□□□□ -0.69
Upf3a-201ENSMUST00000043767 B930094E09RikQ8C4T2 136 aa10.68□□□□□ -0.7
Upf3a-201ENSMUST00000043767 Gm19426M0QWC7 77 aa10.65□□□□□ -0.7
Upf3a-201ENSMUST00000043767 Gm21887J3QQ04 176 aa10.64□□□□□ -0.71
Upf3a-201ENSMUST00000043767 Gm17402F6Z0L5 76 aa10.54□□□□□ -0.72
Upf3a-201ENSMUST00000043767 SspoQ8CG65 4998 aa10.46□□□□□ -0.73
Upf3a-201ENSMUST00000043767 Lce1jD3YUU5 139 aa10.35□□□□□ -0.75
Upf3a-201ENSMUST00000043767 Gm10061D3Z714 54 aa10.32□□□□□ -0.76
Upf3a-201ENSMUST00000043767 Spink7Q6IE32 76 aa10.32□□□□□ -0.76
Upf3a-201ENSMUST00000043767 Krtap7-1Q9D3I6 87 aa10.29□□□□□ -0.76
Upf3a-201ENSMUST00000043767 Krtap12-1Q9Z287 130 aa10.24□□□□□ -0.77
Upf3a-201ENSMUST00000043767 Gm40193A0A1B0GT39 78 aa10.22□□□□□ -0.77
Upf3a-201ENSMUST00000043767 Krtap17-1A2A5X6 109 aa10.16□□□□□ -0.78
Upf3a-201ENSMUST00000043767 Sprr2a3Q4KL71 83 aa10.13□□□□□ -0.79
Upf3a-201ENSMUST00000043767 Sprr2a1Q9CQK8 83 aa10.13□□□□□ -0.79
Upf3a-201ENSMUST00000043767 Krtap19-9aF8WH65 55 aa10.07□□□□□ -0.8
Upf3a-201ENSMUST00000043767 Krtap19-2Q925I0 141 aa10.05□□□□□ -0.8
Upf3a-201ENSMUST00000043767 Ndufaf8A2AMZ4 74 aa10.02□□□□□ -0.81
Upf3a-201ENSMUST00000043767 Krtap9-5A2A5X3 358 aa10.02□□□□□ -0.81
Upf3a-201ENSMUST00000043767 Prm2P07978 107 aa9.97□□□□□ -0.81
Upf3a-201ENSMUST00000043767 Gm11569B1AQB1 180 aa9.89□□□□□ -0.83
Upf3a-201ENSMUST00000043767 Gm19668J3QMD1 248 aa9.71□□□□□ -0.85
Upf3a-201ENSMUST00000043767 Muc5bE9Q5I3 4800 aa9.71□□□□□ -0.85
Upf3a-201ENSMUST00000043767 Lce1iQ9D6P5 149 aa9.7□□□□□ -0.86
Upf3a-201ENSMUST00000043767 Camk2n1Q6QWF9 78 aa9.63□□□□□ -0.87
Upf3a-201ENSMUST00000043767 Lce1a2Q9D1K4 149 aa9.58□□□□□ -0.88
Upf3a-201ENSMUST00000043767 Gm6358A0A087WPH4 74 aa9.53□□□□□ -0.88
Upf3a-201ENSMUST00000043767 Mdn1A2ANY6 5589 aaKnown RBP9.31□□□□□ -0.92
Upf3a-201ENSMUST00000043767 Mt2P02798 61 aa9.25□□□□□ -0.93
Upf3a-201ENSMUST00000043767 Tnp1P10856 55 aa9.2□□□□□ -0.94
Upf3a-201ENSMUST00000043767 Krtap4-2B1AQ85 167 aa9.19□□□□□ -0.94
Upf3a-201ENSMUST00000043767 Lce1gQ9D195 139 aa9.16□□□□□ -0.94
Upf3a-201ENSMUST00000043767 Gm11555B1AQ89 175 aa9.1□□□□□ -0.95
Upf3a-201ENSMUST00000043767 Gm9112A2AI92 75 aa9.09□□□□□ -0.95
Upf3a-201ENSMUST00000043767 Krtap8-1O08633 61 aa9.08□□□□□ -0.96
Upf3a-201ENSMUST00000043767 Krtap4-6Q3V4B7 195 aa9.06□□□□□ -0.96
Upf3a-201ENSMUST00000043767 Krtap19-9bQ99NG9 58 aa9.02□□□□□ -0.97
Upf3a-201ENSMUST00000043767 Syne2Q6ZWQ0 6874 aaKnown RBP8.93□□□□□ -0.98
Upf3a-201ENSMUST00000043767 Gm11596B1AQB0 205 aa8.89□□□□□ -0.99
Upf3a-201ENSMUST00000043767 Krtap4-1Q3UUY3 169 aa8.87□□□□□ -0.99
Upf3a-201ENSMUST00000043767 Gm11562A0PK51 136 aa8.85□□□□□ -0.99
Upf3a-201ENSMUST00000043767 2310046K23RikA0A0A6YVW6 87 aa8.8□□□□□ -1
Upf3a-201ENSMUST00000043767 Krtap22-2J3QNX6 67 aa8.74□□□□□ -1.01
Upf3a-201ENSMUST00000043767 Krtap9-3Q3V2C1 136 aa8.65□□□□□ -1.02
Upf3a-201ENSMUST00000043767 Gm11564A2A4L9 201 aa8.61□□□□□ -1.03
Upf3a-201ENSMUST00000043767 Gm11563B1AQ90 168 aa8.61□□□□□ -1.03
Upf3a-201ENSMUST00000043767 Gm11595B1AQA7 289 aa8.61□□□□□ -1.03
Upf3a-201ENSMUST00000043767 Krtap4-8B1AQA8 209 aa8.61□□□□□ -1.03
Upf3a-201ENSMUST00000043767 Lce1hQ9D6R3 140 aa8.53□□□□□ -1.04
Upf3a-201ENSMUST00000043767 Krtap4-9B1AQA9 244 aa8.4□□□□□ -1.06
Upf3a-201ENSMUST00000043767 Mt4P47945 62 aa8.39□□□□□ -1.07
Upf3a-201ENSMUST00000043767 Fsip2A2ARZ3 6995 aa8.35□□□□□ -1.07
Upf3a-201ENSMUST00000043767 Lce1bQ9D149 137 aa8.18□□□□□ -1.1
Upf3a-201ENSMUST00000043767 Gm38119A0A0A6YX29 146 aa8.12□□□□□ -1.11
Upf3a-201ENSMUST00000043767 Krtap4-13Q9D7P3 165 aa8.1□□□□□ -1.11
Upf3a-201ENSMUST00000043767 Gm10272F7CZ33 110 aa7.99□□□□□ -1.13
Upf3a-201ENSMUST00000043767 2300003K06RikA2A4M0 262 aa7.94□□□□□ -1.14
Upf3a-201ENSMUST00000043767 Sprr2kO70562 68 aa7.91□□□□□ -1.14
Upf3a-201ENSMUST00000043767 Lce1dQ9D731 133 aa7.84□□□□□ -1.15
Upf3a-201ENSMUST00000043767 Sprr2gO70558 76 aa7.83□□□□□ -1.16
Upf3a-201ENSMUST00000043767 4933428G20RikQ9D3X4 101 aa7.76□□□□□ -1.17
Upf3a-201ENSMUST00000043767 Syne1Q6ZWR6 8799 aa7.75□□□□□ -1.17
Retrieved 100 of 22,080 RNA–protein pairs in 42.5 ms