RNA–Protein interactions for RNA: ENSMUST00000040783.10

Usp40-201, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Usp40, Length 5,049 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-201ENSMUST00000040783 4933428G20RikQ9D3X4 101 aa3.52□□□□□ -1.85
Usp40-201ENSMUST00000040783 Gm19668J3QMD1 248 aa3.51□□□□□ -1.85
Usp40-201ENSMUST00000040783 Lrp1bQ9JI18 4599 aa3.51□□□□□ -1.85
Usp40-201ENSMUST00000040783 PrkdcP97313 4128 aa3.51□□□□□ -1.85
Usp40-201ENSMUST00000040783 Pkd1O08852 4293 aa3.5□□□□□ -1.85
Usp40-201ENSMUST00000040783 PlecQ9QXS1 4691 aaKnown RBP3.49□□□□□ -1.85
Usp40-201ENSMUST00000040783 Vps13bQ80TY5 3993 aa3.48□□□□□ -1.85
Usp40-201ENSMUST00000040783 TnxbO35452 4006 aa3.47□□□□□ -1.85
Usp40-201ENSMUST00000040783 Pkhd1E9PZ36 4059 aa3.46□□□□□ -1.86
Usp40-201ENSMUST00000040783 Krtap7-1Q9D3I6 87 aa3.46□□□□□ -1.86
Usp40-201ENSMUST00000040783 Krtap3-1A2A591 98 aa3.44□□□□□ -1.86
Usp40-201ENSMUST00000040783 Gm18596A0A1W2P860 280 aa3.44□□□□□ -1.86
Usp40-201ENSMUST00000040783 SacsQ9JLC8 4582 aa3.39□□□□□ -1.87
Usp40-201ENSMUST00000040783 Fat2Q5F226 4351 aa3.35□□□□□ -1.87
Usp40-201ENSMUST00000040783 Ryr1E9PZQ0 5035 aa3.33□□□□□ -1.88
Usp40-201ENSMUST00000040783 Krtap1-5A2A590 122 aa3.31□□□□□ -1.88
Usp40-201ENSMUST00000040783 LorP18165 486 aa3.29□□□□□ -1.88
Usp40-201ENSMUST00000040783 Lrp1Q91ZX7 4545 aaKnown RBP3.28□□□□□ -1.88
Usp40-201ENSMUST00000040783 Pkhd1l1Q80ZA4 4249 aa3.28□□□□□ -1.88
Usp40-201ENSMUST00000040783 Krtap19-9aF8WH65 55 aa3.26□□□□□ -1.89
Usp40-201ENSMUST00000040783 Krtap17-1A2A5X6 109 aa3.25□□□□□ -1.89
Usp40-201ENSMUST00000040783 Krtap8-1O08633 61 aa3.24□□□□□ -1.89
Usp40-201ENSMUST00000040783 Lce1mQ9CR91 182 aa3.23□□□□□ -1.89
Usp40-201ENSMUST00000040783 Gm19402J3QJV4 266 aa3.22□□□□□ -1.89
Usp40-201ENSMUST00000040783 Fat1A0A1L1SQU7 4645 aa3.22□□□□□ -1.89
Usp40-201ENSMUST00000040783 Krtap1-4Q3V2D6 188 aa3.21□□□□□ -1.89
Usp40-201ENSMUST00000040783 Fat3Q8BNA6 4555 aa3.21□□□□□ -1.9
Usp40-201ENSMUST00000040783 Dync1h1Q9JHU4 4644 aaKnown RBP3.2□□□□□ -1.9
Usp40-201ENSMUST00000040783 Sprr2a3Q4KL71 83 aa3.19□□□□□ -1.9
Usp40-201ENSMUST00000040783 Sprr2a1Q9CQK8 83 aa3.19□□□□□ -1.9
Usp40-201ENSMUST00000040783 Mycbp2Q7TPH6 4711 aa3.18□□□□□ -1.9
Usp40-201ENSMUST00000040783 Gm6358A0A087WPH4 74 aa3.17□□□□□ -1.9
Usp40-201ENSMUST00000040783 Sprr2kO70562 68 aa3.17□□□□□ -1.9
Usp40-201ENSMUST00000040783 Krtap12-1Q9Z287 130 aa3.15□□□□□ -1.91
Usp40-201ENSMUST00000040783 Ryr3A2AGL3 4863 aa3.12□□□□□ -1.91
Usp40-201ENSMUST00000040783 Krtap19-9bQ99NG9 58 aa3.1□□□□□ -1.91
Usp40-201ENSMUST00000040783 Prm1P02319 51 aa3.09□□□□□ -1.92
Usp40-201ENSMUST00000040783 Dnah8Q91XQ0 4731 aa3.04□□□□□ -1.92
Usp40-201ENSMUST00000040783 Herc2Q4U2R1 4836 aa3.03□□□□□ -1.92
Usp40-201ENSMUST00000040783 Sprr2gO70558 76 aa3.02□□□□□ -1.93
Usp40-201ENSMUST00000040783 Kiaa1109A2AAE1 5005 aa3.02□□□□□ -1.93
Usp40-201ENSMUST00000040783 Krtap19-3Q925H6 87 aa2.99□□□□□ -1.93
Usp40-201ENSMUST00000040783 HydinQ80W93 5154 aa2.99□□□□□ -1.93
Usp40-201ENSMUST00000040783 Krtap16-3Q8C1I6 86 aa2.99□□□□□ -1.93
Usp40-201ENSMUST00000040783 Kmt2cQ8BRH4 4903 aa2.96□□□□□ -1.94
Usp40-201ENSMUST00000040783 Krtap9-5A2A5X3 358 aa2.96□□□□□ -1.94
Usp40-201ENSMUST00000040783 Gm7735D3YX18 52 aa2.96□□□□□ -1.94
Usp40-201ENSMUST00000040783 Ryr2E9Q401 4966 aaKnown RBP2.93□□□□□ -1.94
Usp40-201ENSMUST00000040783 Krtap19-1Q925H2 87 aa2.93□□□□□ -1.94
Usp40-201ENSMUST00000040783 Lrp2A2ARV4 4660 aa2.91□□□□□ -1.94
Usp40-201ENSMUST00000040783 Abca13Q5SSE9 5034 aa2.91□□□□□ -1.94
Usp40-201ENSMUST00000040783 Dnhd1D3Z2X2 4750 aa2.9□□□□□ -1.95
Usp40-201ENSMUST00000040783 Gm9789Q8BIG3 52 aa2.88□□□□□ -1.95
Usp40-201ENSMUST00000040783 Krtap4-1Q3UUY3 169 aa2.86□□□□□ -1.95
Usp40-201ENSMUST00000040783 Lce3bQ9CQM7 98 aa2.84□□□□□ -1.95
Usp40-201ENSMUST00000040783 Krtap1-3A2A588 173 aa2.84□□□□□ -1.96
Usp40-201ENSMUST00000040783 PcloQ9QYX7 5068 aa2.81□□□□□ -1.96
Usp40-201ENSMUST00000040783 Krtap22-2J3QNX6 67 aa2.8□□□□□ -1.96
Usp40-201ENSMUST00000040783 Krtap31-1Q9D644 177 aa2.8□□□□□ -1.96
Usp40-201ENSMUST00000040783 Mt2P02798 61 aa2.79□□□□□ -1.96
Usp40-201ENSMUST00000040783 Krtap19-2Q925I0 141 aa2.79□□□□□ -1.96
Usp40-201ENSMUST00000040783 2310046K23RikA0A0A6YVW6 87 aa2.77□□□□□ -1.97
Usp40-201ENSMUST00000040783 Gm10061D3Z714 54 aa2.76□□□□□ -1.97
Usp40-201ENSMUST00000040783 Birc6O88738 4882 aa2.76□□□□□ -1.97
Usp40-201ENSMUST00000040783 Herc1E9PZP8 4859 aa2.76□□□□□ -1.97
Usp40-201ENSMUST00000040783 Lce3cQ91V05 98 aa2.75□□□□□ -1.97
Usp40-201ENSMUST00000040783 Gm38119A0A0A6YX29 146 aa2.74□□□□□ -1.97
Usp40-201ENSMUST00000040783 Gm10272F7CZ33 110 aa2.74□□□□□ -1.97
Usp40-201ENSMUST00000040783 Gm11569B1AQB1 180 aa2.72□□□□□ -1.97
Usp40-201ENSMUST00000040783 Sprr2iO70560 76 aa2.7□□□□□ -1.98
Usp40-201ENSMUST00000040783 Lce1jD3YUU5 139 aa2.68□□□□□ -1.98
Usp40-201ENSMUST00000040783 4932415D10RikA0A1W2P6U8 4986 aa2.67□□□□□ -1.98
Usp40-201ENSMUST00000040783 Gm11563B1AQ90 168 aa2.65□□□□□ -1.98
Usp40-201ENSMUST00000040783 Krtap4-7Q9D732 168 aa2.65□□□□□ -1.98
Usp40-201ENSMUST00000040783 Gm11562A0PK51 136 aa2.65□□□□□ -1.98
Usp40-201ENSMUST00000040783 Lce3eF8VQJ0 98 aa2.65□□□□□ -1.98
Usp40-201ENSMUST00000040783 Lce3fQ6PAI4 98 aa2.65□□□□□ -1.98
Usp40-201ENSMUST00000040783 Lce3dE9Q8V1 98 aa2.65□□□□□ -1.99
Usp40-201ENSMUST00000040783 Gm10100J3QK64 120 aa2.64□□□□□ -1.99
Usp40-201ENSMUST00000040783 Krtap4-2B1AQ85 167 aa2.63□□□□□ -1.99
Usp40-201ENSMUST00000040783 Mdn1A2ANY6 5589 aaKnown RBP2.63□□□□□ -1.99
Usp40-201ENSMUST00000040783 Ubr4A2AN08 5180 aa2.61□□□□□ -1.99
Usp40-201ENSMUST00000040783 Gm11555B1AQ89 175 aa2.61□□□□□ -1.99
Usp40-201ENSMUST00000040783 Gm10142J3KMP7 120 aa2.61□□□□□ -1.99
Usp40-201ENSMUST00000040783 Krtap31-2Q8CAY5 177 aa2.6□□□□□ -1.99
Usp40-201ENSMUST00000040783 Hmcn2A2AJ76 5100 aa2.6□□□□□ -1.99
Usp40-201ENSMUST00000040783 Krtap9-3Q3V2C1 136 aa2.59□□□□□ -1.99
Usp40-201ENSMUST00000040783 Lce1dQ9D731 133 aa2.59□□□□□ -1.99
Usp40-201ENSMUST00000040783 Lce3aQ497I5 98 aa2.58□□□□□ -2
Usp40-201ENSMUST00000040783 Lce1fB9EJP6 147 aa2.57□□□□□ -2
Usp40-201ENSMUST00000040783 Lce1bQ9D149 137 aa2.57□□□□□ -2
Usp40-201ENSMUST00000040783 Lce1cQ9D1C5 147 aa2.57□□□□□ -2
Usp40-201ENSMUST00000040783 Lce1lQ9D1G7 135 aa2.57□□□□□ -2
Usp40-201ENSMUST00000040783 Lce1gQ9D195 139 aa2.57□□□□□ -2
Usp40-201ENSMUST00000040783 Mt4P47945 62 aa2.55□□□□□ -2
Usp40-201ENSMUST00000040783 Ush2AQ2QI47 5193 aa2.55□□□□□ -2
Usp40-201ENSMUST00000040783 Krtap4-6Q3V4B7 195 aa2.55□□□□□ -2
Usp40-201ENSMUST00000040783 Lce1hQ9D6R3 140 aa2.55□□□□□ -2
Usp40-201ENSMUST00000040783 Fat4Q2PZL6 4981 aa2.54□□□□□ -2
Usp40-201ENSMUST00000040783 Rnf213E9Q555 5152 aaKnown RBP2.54□□□□□ -2
Retrieved 100 of 22,080 RNA–protein pairs in 64.4 ms