RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 2210017I01RikA0A0A6YVV1 95 aa8.28□□□□□ -1.08
Ctcf-201ENSMUST00000005841 Krtap19-5O08632 62 aa8.28□□□□□ -1.08
Ctcf-201ENSMUST00000005841 Ryr2E9Q401 4966 aaKnown RBP8.26□□□□□ -1.09
Ctcf-201ENSMUST00000005841 B930094E09RikQ8C4T2 136 aa8.25□□□□□ -1.09
Ctcf-201ENSMUST00000005841 Gm9736A0A1W2P7N1 277 aa8.24□□□□□ -1.09
Ctcf-201ENSMUST00000005841 Gm19426M0QWC7 77 aa8.16□□□□□ -1.1
Ctcf-201ENSMUST00000005841 Gm5965D3Z724 196 aa8.16□□□□□ -1.1
Ctcf-201ENSMUST00000005841 Ndufaf8A2AMZ4 74 aa8.15□□□□□ -1.1
Ctcf-201ENSMUST00000005841 Krtap15-1Q9QZU5 150 aa8.11□□□□□ -1.11
Ctcf-201ENSMUST00000005841 Gm17402F6Z0L5 76 aa8.06□□□□□ -1.12
Ctcf-201ENSMUST00000005841 Gm19402J3QJV4 266 aa8.05□□□□□ -1.12
Ctcf-201ENSMUST00000005841 Gm19668J3QMD1 248 aa8.03□□□□□ -1.12
Ctcf-201ENSMUST00000005841 Ryr1E9PZQ0 5035 aa7.98□□□□□ -1.13
Ctcf-201ENSMUST00000005841 Gm40193A0A1B0GT39 78 aa7.96□□□□□ -1.13
Ctcf-201ENSMUST00000005841 Krtap13-1Q8K198 168 aa7.95□□□□□ -1.14
Ctcf-201ENSMUST00000005841 Dnhd1D3Z2X2 4750 aa7.9□□□□□ -1.14
Ctcf-201ENSMUST00000005841 Lrp2A2ARV4 4660 aa7.88□□□□□ -1.15
Ctcf-201ENSMUST00000005841 Krtap1-5A2A590 122 aa7.88□□□□□ -1.15
Ctcf-201ENSMUST00000005841 Sprr2a3Q4KL71 83 aa7.87□□□□□ -1.15
Ctcf-201ENSMUST00000005841 Sprr2a1Q9CQK8 83 aa7.87□□□□□ -1.15
Ctcf-201ENSMUST00000005841 BC029722A0A0N4SW31 51 aa7.84□□□□□ -1.15
Ctcf-201ENSMUST00000005841 Birc6O88738 4882 aa7.77□□□□□ -1.17
Ctcf-201ENSMUST00000005841 Fam229aB2KGE5 128 aa7.76□□□□□ -1.17
Ctcf-201ENSMUST00000005841 2310057N15RikQ9D6T8 200 aa7.67□□□□□ -1.18
Ctcf-201ENSMUST00000005841 HydinQ80W93 5154 aa7.61□□□□□ -1.19
Ctcf-201ENSMUST00000005841 Gm9112A2AI92 75 aa7.6□□□□□ -1.19
Ctcf-201ENSMUST00000005841 Kiaa1109A2AAE1 5005 aa7.53□□□□□ -1.2
Ctcf-201ENSMUST00000005841 Krtap16-3Q8C1I6 86 aa7.51□□□□□ -1.21
Ctcf-201ENSMUST00000005841 Herc2Q4U2R1 4836 aa7.46□□□□□ -1.21
Ctcf-201ENSMUST00000005841 Herc1E9PZP8 4859 aa7.39□□□□□ -1.23
Ctcf-201ENSMUST00000005841 Krtap19-1Q925H2 87 aa7.37□□□□□ -1.23
Ctcf-201ENSMUST00000005841 Krtap19-3Q925H6 87 aa7.26□□□□□ -1.25
Ctcf-201ENSMUST00000005841 Krtap1-4Q3V2D6 188 aa7.25□□□□□ -1.25
Ctcf-201ENSMUST00000005841 PcloQ9QYX7 5068 aa7.24□□□□□ -1.25
Ctcf-201ENSMUST00000005841 Sec61bQ9CQS8 96 aaKnown RBP7.21□□□□□ -1.26
Ctcf-201ENSMUST00000005841 Hmcn2A2AJ76 5100 aa7.16□□□□□ -1.26
Ctcf-201ENSMUST00000005841 Spink7Q6IE32 76 aa7.13□□□□□ -1.27
Ctcf-201ENSMUST00000005841 4932415D10RikA0A1W2P6U8 4986 aa7.12□□□□□ -1.27
Ctcf-201ENSMUST00000005841 Gm10318A0A1W2P728 225 aa7.1□□□□□ -1.27
Ctcf-201ENSMUST00000005841 Crct1Q6PAI5 102 aa7.07□□□□□ -1.28
Ctcf-201ENSMUST00000005841 Camk2n1Q6QWF9 78 aa7.05□□□□□ -1.28
Ctcf-201ENSMUST00000005841 Ubr4A2AN08 5180 aa7.04□□□□□ -1.28
Ctcf-201ENSMUST00000005841 ZanO88799 5376 aa7.03□□□□□ -1.28
Ctcf-201ENSMUST00000005841 Lce1jD3YUU5 139 aa7.03□□□□□ -1.28
Ctcf-201ENSMUST00000005841 2310046K23RikA0A0A6YVW6 87 aa6.99□□□□□ -1.29
Ctcf-201ENSMUST00000005841 Lce1mQ9CR91 182 aa6.98□□□□□ -1.29
Ctcf-201ENSMUST00000005841 Tnp1P10856 55 aa6.95□□□□□ -1.3
Ctcf-201ENSMUST00000005841 Fat4Q2PZL6 4981 aa6.91□□□□□ -1.3
Ctcf-201ENSMUST00000005841 Krtap8-1O08633 61 aa6.84□□□□□ -1.31
Ctcf-201ENSMUST00000005841 Gm18596A0A1W2P860 280 aa6.83□□□□□ -1.32
Ctcf-201ENSMUST00000005841 Krtap19-9aF8WH65 55 aa6.78□□□□□ -1.32
Ctcf-201ENSMUST00000005841 Krtap12-1Q9Z287 130 aa6.78□□□□□ -1.32
Ctcf-201ENSMUST00000005841 Krtap1-3A2A588 173 aa6.69□□□□□ -1.34
Ctcf-201ENSMUST00000005841 Rnf213E9Q555 5152 aaKnown RBP6.68□□□□□ -1.34
Ctcf-201ENSMUST00000005841 Krtap9-3Q3V2C1 136 aa6.66□□□□□ -1.34
Ctcf-201ENSMUST00000005841 Krtap17-1A2A5X6 109 aa6.64□□□□□ -1.35
Ctcf-201ENSMUST00000005841 Lce1iQ9D6P5 149 aa6.64□□□□□ -1.35
Ctcf-201ENSMUST00000005841 Ush2AQ2QI47 5193 aa6.62□□□□□ -1.35
Ctcf-201ENSMUST00000005841 Lce1a2Q9D1K4 149 aa6.62□□□□□ -1.35
Ctcf-201ENSMUST00000005841 Lce1hQ9D6R3 140 aa6.58□□□□□ -1.36
Ctcf-201ENSMUST00000005841 Krtap19-9bQ99NG9 58 aa6.56□□□□□ -1.36
Ctcf-201ENSMUST00000005841 Lce1dQ9D731 133 aa6.47□□□□□ -1.37
Ctcf-201ENSMUST00000005841 SspoQ8CG65 4998 aa6.44□□□□□ -1.38
Ctcf-201ENSMUST00000005841 Prm1P02319 51 aa6.43□□□□□ -1.38
Ctcf-201ENSMUST00000005841 Gm7735D3YX18 52 aa6.41□□□□□ -1.38
Ctcf-201ENSMUST00000005841 Gm9789Q8BIG3 52 aa6.35□□□□□ -1.39
Ctcf-201ENSMUST00000005841 LorP18165 486 aa6.31□□□□□ -1.4
Ctcf-201ENSMUST00000005841 Krtap19-2Q925I0 141 aa6.31□□□□□ -1.4
Ctcf-201ENSMUST00000005841 Lce1eQ9D139 143 aa6.25□□□□□ -1.41
Ctcf-201ENSMUST00000005841 Muc5bE9Q5I3 4800 aa6.24□□□□□ -1.41
Ctcf-201ENSMUST00000005841 Sprr2gO70558 76 aa6.22□□□□□ -1.41
Ctcf-201ENSMUST00000005841 Gm11938Q9D3H4 131 aa6.17□□□□□ -1.42
Ctcf-201ENSMUST00000005841 Krtap9-5A2A5X3 358 aa6.16□□□□□ -1.42
Ctcf-201ENSMUST00000005841 Sprr2dO70555 85 aa6.13□□□□□ -1.43
Ctcf-201ENSMUST00000005841 Mt2P02798 61 aa5.89□□□□□ -1.47
Ctcf-201ENSMUST00000005841 Gm6358A0A087WPH4 74 aa5.87□□□□□ -1.47
Ctcf-201ENSMUST00000005841 4933428G20RikQ9D3X4 101 aa5.83□□□□□ -1.48
Ctcf-201ENSMUST00000005841 Lce1cQ9D1C5 147 aa5.78□□□□□ -1.48
Ctcf-201ENSMUST00000005841 Gm11562A0PK51 136 aa5.73□□□□□ -1.49
Ctcf-201ENSMUST00000005841 Gm10061D3Z714 54 aa5.67□□□□□ -1.5
Ctcf-201ENSMUST00000005841 Sprr2iO70560 76 aa5.62□□□□□ -1.51
Ctcf-201ENSMUST00000005841 Gm10272F7CZ33 110 aa5.59□□□□□ -1.51
Ctcf-201ENSMUST00000005841 Lce1fB9EJP6 147 aa5.59□□□□□ -1.52
Ctcf-201ENSMUST00000005841 Lce1a1Q9CQH5 143 aa5.59□□□□□ -1.52
Ctcf-201ENSMUST00000005841 Krtap31-1Q9D644 177 aa5.56□□□□□ -1.52
Ctcf-201ENSMUST00000005841 Gm11569B1AQB1 180 aa5.56□□□□□ -1.52
Ctcf-201ENSMUST00000005841 Krtap19-4Q925H7 84 aa5.5□□□□□ -1.53
Ctcf-201ENSMUST00000005841 Krtap22-2J3QNX6 67 aa5.48□□□□□ -1.53
Ctcf-201ENSMUST00000005841 Krtap4-2B1AQ85 167 aa5.43□□□□□ -1.54
Ctcf-201ENSMUST00000005841 Lce1gQ9D195 139 aa5.35□□□□□ -1.55
Ctcf-201ENSMUST00000005841 Gm10100J3QK64 120 aa5.34□□□□□ -1.55
Ctcf-201ENSMUST00000005841 Sprr2eO70556 76 aa5.34□□□□□ -1.55
Ctcf-201ENSMUST00000005841 Sprr2hO70559 108 aa5.34□□□□□ -1.55
Ctcf-201ENSMUST00000005841 Syne1Q6ZWR6 8799 aa5.32□□□□□ -1.56
Ctcf-201ENSMUST00000005841 2300003K06RikA2A4M0 262 aa5.3□□□□□ -1.56
Ctcf-201ENSMUST00000005841 Gm10142J3KMP7 120 aa5.29□□□□□ -1.56
Ctcf-201ENSMUST00000005841 Lce3bQ9CQM7 98 aa5.28□□□□□ -1.56
Ctcf-201ENSMUST00000005841 Sprr2fO70557 76 aa5.25□□□□□ -1.57
Ctcf-201ENSMUST00000005841 Syne2Q6ZWQ0 6874 aaKnown RBP5.2□□□□□ -1.58
Ctcf-201ENSMUST00000005841 Sprr2kO70562 68 aa5.17□□□□□ -1.58
Retrieved 100 of 22,080 RNA–protein pairs in 42 ms