RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W SUI3P09064 285 aaKnown RBP6.12□□□□□ -1.43
PRP40YKL012W PDE1P22434 369 aa6.12□□□□□ -1.43
PRP40YKL012W CNE1P27825 502 aa6.12□□□□□ -1.43
PRP40YKL012W SUL1P38359 859 aa6.12□□□□□ -1.43
PRP40YKL012W ARO9P38840 513 aaPredicted RBP6.12□□□□□ -1.43
PRP40YKL012W PFK26P40433 827 aaKnown RBP6.12□□□□□ -1.43
PRP40YKL012W UBP7P40453 1071 aa6.12□□□□□ -1.43
PRP40YKL012W AAD10P47182 288 aa6.12□□□□□ -1.43
PRP40YKL012W SSL2Q00578 843 aa6.12□□□□□ -1.43
PRP40YKL012W FCP1Q03254 732 aa6.12□□□□□ -1.43
PRP40YKL012W GTB1Q04924 702 aa6.12□□□□□ -1.43
PRP40YKL012W PSK2Q08217 1101 aa6.12□□□□□ -1.43
PRP40YKL012W YER175W-AQ8TGU4 54 aa6.12□□□□□ -1.43
PRP40YKL012W YBR126W-AQ8TGU7 68 aa6.12□□□□□ -1.43
PRP40YKL012W GCN4P03069 281 aa6.11□□□□□ -1.43
PRP40YKL012W PRE8P23639 250 aa6.11□□□□□ -1.43
PRP40YKL012W LRE1P25579 583 aaKnown RBP6.11□□□□□ -1.43
PRP40YKL012W TPA1P40032 644 aaKnown RBP6.11□□□□□ -1.43
PRP40YKL012W IMO32P53219 342 aa6.11□□□□□ -1.43
PRP40YKL012W RAD30Q04049 632 aa6.11□□□□□ -1.43
PRP40YKL012W BMS1Q08965 1183 aaKnown RBP6.11□□□□□ -1.43
PRP40YKL012W STE4P18851 423 aa6.11□□□□□ -1.43
PRP40YKL012W NPL6P32832 435 aa6.11□□□□□ -1.43
PRP40YKL012W ALY1P36117 915 aa6.11□□□□□ -1.43
PRP40YKL012W LNP1P38878 278 aa6.11□□□□□ -1.43
PRP40YKL012W SPC98P53540 846 aa6.11□□□□□ -1.43
PRP40YKL012W MUB1Q03162 620 aa6.11□□□□□ -1.43
PRP40YKL012W YOL073CQ08232 322 aa6.11□□□□□ -1.43
PRP40YKL012W TGS1Q12052 315 aa6.11□□□□□ -1.43
PRP40YKL012W NMD4Q12129 218 aa6.11□□□□□ -1.43
PRP40YKL012W PRS5Q12265 496 aaKnown RBP6.11□□□□□ -1.43
PRP40YKL012W YML003WP0CF16 290 aa6.1□□□□□ -1.43
PRP40YKL012W FUR1P18562 216 aaKnown RBP6.1□□□□□ -1.43
PRP40YKL012W YCK1P23291 538 aa6.1□□□□□ -1.43
PRP40YKL012W ELM1P32801 640 aa6.1□□□□□ -1.43
PRP40YKL012W LOT5P34234 306 aa6.1□□□□□ -1.43
PRP40YKL012W YPT10P38146 199 aa6.1□□□□□ -1.43
PRP40YKL012W YBL029WP38201 376 aa6.1□□□□□ -1.43
PRP40YKL012W SLZ1P40167 298 aa6.1□□□□□ -1.43
PRP40YKL012W PIL1P53252 339 aaKnown RBP6.1□□□□□ -1.43
PRP40YKL012W UTP21Q06078 939 aaPredicted RBP6.1□□□□□ -1.43
PRP40YKL012W KGD2P19262 463 aaPredicted RBP6.09□□□□□ -1.43
PRP40YKL012W FLC2P39719 783 aa6.09□□□□□ -1.43
PRP40YKL012W ARF3P40994 183 aaRIP-Chip data6.09□□□□□ -1.43not detected
PRP40YKL012W YNR061CP53747 219 aa6.09□□□□□ -1.43
PRP40YKL012W VPS75P53853 264 aa6.09□□□□□ -1.43
PRP40YKL012W SYF1Q04048 859 aaPredicted RBP6.09□□□□□ -1.43
PRP40YKL012W RRG1Q12167 365 aaPredicted RBP6.09□□□□□ -1.43
PRP40YKL012W NOP58Q12499 511 aaKnown RBP6.09□□□□□ -1.43
PRP40YKL012W LAM4P38800 1345 aa6.09□□□□□ -1.43
PRP40YKL012W YPK1P12688 680 aaKnown RBP6.08□□□□□ -1.44
PRP40YKL012W CTS1P29029 562 aa6.08□□□□□ -1.44
PRP40YKL012W ARG2P40360 574 aa6.08□□□□□ -1.44
PRP40YKL012W INN1P53901 409 aa6.08□□□□□ -1.44
PRP40YKL012W SMX3P54999 86 aaPredicted RBP6.08□□□□□ -1.44
PRP40YKL012W NGL2Q03264 515 aaKnown RBP6.08□□□□□ -1.44
PRP40YKL012W SPN1Q06505 410 aaPredicted RBP6.08□□□□□ -1.44
PRP40YKL012W CIR2Q08822 631 aa6.08□□□□□ -1.44
PRP40YKL012W CTI6Q08923 506 aa6.08□□□□□ -1.44
PRP40YKL012W CKA1P15790 372 aa6.08□□□□□ -1.44
PRP40YKL012W NDC80P40460 691 aa6.08□□□□□ -1.44
PRP40YKL012W CIR1P42940 261 aa6.08□□□□□ -1.44
PRP40YKL012W MRX6P48564 524 aa6.08□□□□□ -1.44
PRP40YKL012W TRS23Q03784 219 aa6.08□□□□□ -1.44
PRP40YKL012W AAC1P04710 309 aa6.07□□□□□ -1.44
PRP40YKL012W PMI40P29952 429 aaKnown RBP6.07□□□□□ -1.44
PRP40YKL012W TFC3P34111 1160 aa6.07□□□□□ -1.44
PRP40YKL012W KTR3P38130 404 aaPredicted RBP6.07□□□□□ -1.44
PRP40YKL012W CTR1P49573 406 aa6.07□□□□□ -1.44
PRP40YKL012W DSD1P53095 428 aa6.07□□□□□ -1.44
PRP40YKL012W YGR079WP53249 370 aa6.07□□□□□ -1.44
PRP40YKL012W YPL071CQ02864 156 aa6.07□□□□□ -1.44
PRP40YKL012W NGL3Q03210 505 aa6.07□□□□□ -1.44
PRP40YKL012W ARP9Q05123 467 aa6.07□□□□□ -1.44
PRP40YKL012W MRI1Q06489 411 aaKnown RBP6.07□□□□□ -1.44
PRP40YKL012W RIX7Q07844 837 aaKnown RBP6.07□□□□□ -1.44
PRP40YKL012W ARG3P05150 338 aa6.06□□□□□ -1.44
PRP40YKL012W SRB5P32585 307 aa6.06□□□□□ -1.44
PRP40YKL012W GMH1P36125 273 aa6.06□□□□□ -1.44
PRP40YKL012W UTP9P38882 575 aaKnown RBP6.06□□□□□ -1.44
PRP40YKL012W PMT6P42934 759 aa6.06□□□□□ -1.44
PRP40YKL012W YNL092WP53934 400 aa6.06□□□□□ -1.44
PRP40YKL012W YDL073WQ07454 984 aa6.06□□□□□ -1.44
PRP40YKL012W YDL242WQ07746 117 aa6.06□□□□□ -1.44
PRP40YKL012W RCN2Q12044 265 aa6.06□□□□□ -1.44
PRP40YKL012W YOR019WQ99248 730 aa6.06□□□□□ -1.44
PRP40YKL012W CET1O13297 549 aaPredicted RBP6.06□□□□□ -1.44
PRP40YKL012W RED1P14291 827 aa6.06□□□□□ -1.44
PRP40YKL012W KAR3P17119 729 aa6.06□□□□□ -1.44
PRP40YKL012W AMD2P22580 549 aa6.06□□□□□ -1.44
PRP40YKL012W CBR1P38626 284 aaKnown RBP6.06□□□□□ -1.44
PRP40YKL012W YHL017WP38745 532 aa6.06□□□□□ -1.44
PRP40YKL012W PIH1P38768 344 aa6.06□□□□□ -1.44
PRP40YKL012W PCL5P38794 229 aa6.06□□□□□ -1.44
PRP40YKL012W RTS1P38903 757 aa6.06□□□□□ -1.44
PRP40YKL012W MAM1P40065 302 aa6.06□□□□□ -1.44
PRP40YKL012W DJP1P40564 432 aa6.06□□□□□ -1.44
PRP40YKL012W RPT6Q01939 405 aaKnown RBP6.06□□□□□ -1.44
PRP40YKL012W SNU66Q12420 587 aaPredicted RBP6.06□□□□□ -1.44
PRP40YKL012W PGA3Q12746 312 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms