RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 P01823 113 aa11.78□□□□□ -0.52
Shh-201ENSMUST00000002708 Cox17P56394 63 aa11.78□□□□□ -0.52
Shh-201ENSMUST00000002708 Prelid3aQ8VE85 172 aa11.78□□□□□ -0.52
Shh-201ENSMUST00000002708 Spry2Q9QXV8 315 aa11.78□□□□□ -0.52
Shh-201ENSMUST00000002708 TrrapQ80YV3 2565 aaKnown RBP11.78□□□□□ -0.52
Shh-201ENSMUST00000002708 SpinklQ8CEK3 90 aa11.78□□□□□ -0.52
Shh-201ENSMUST00000002708 SvipQ3UZP4 77 aa11.77□□□□□ -0.53
Shh-201ENSMUST00000002708 Shisa2Q8QZV2 295 aa11.77□□□□□ -0.53
Shh-201ENSMUST00000002708 Ly6hQ9WUC3 139 aa11.77□□□□□ -0.53
Shh-201ENSMUST00000002708 Fgfbp3Q1HCM0 245 aa11.76□□□□□ -0.53
Shh-201ENSMUST00000002708 Gm7075D3Z497 112 aa11.76□□□□□ -0.53
Shh-201ENSMUST00000002708 March3Q8BRX9 218 aa11.76□□□□□ -0.53
Shh-201ENSMUST00000002708 Morn3Q8C5T4 241 aa11.76□□□□□ -0.53
Shh-201ENSMUST00000002708 Gm10322F7D7I4 111 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 PrlhG3UWC3 86 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 Sostdc1Q9CQN4 206 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 Mast4Q811L6 2618 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 H1fxQ80ZM5 188 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 Atp5g1Q9CR84 136 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 Brwd1Q921C3 2304 aa11.75□□□□□ -0.53
Shh-201ENSMUST00000002708 Igkv4-79A0A075B5L8 119 aa11.74□□□□□ -0.53
Shh-201ENSMUST00000002708 P01729 129 aa11.74□□□□□ -0.53
Shh-201ENSMUST00000002708 CdsnQ7TPC1 561 aa11.74□□□□□ -0.53
Shh-201ENSMUST00000002708 Gm10300Q8C8P7 189 aa11.74□□□□□ -0.53
Shh-201ENSMUST00000002708 Gm9922Q8C3P1 144 aa11.73□□□□□ -0.53
Shh-201ENSMUST00000002708 Usp9yF8VPU6 2556 aa11.73□□□□□ -0.53
Shh-201ENSMUST00000002708 Eif4ebp1Q60876 117 aa11.73□□□□□ -0.53
Shh-201ENSMUST00000002708 Rnf152Q8BG47 203 aa11.73□□□□□ -0.53
Shh-201ENSMUST00000002708 Gm26661M0QWV4 156 aa11.73□□□□□ -0.53
Shh-201ENSMUST00000002708 Q99M08 65 aa11.72□□□□□ -0.53
Shh-201ENSMUST00000002708 Lypd5Q9D7Z7 256 aa11.72□□□□□ -0.53
Shh-201ENSMUST00000002708 Epg5Q80TA9 2572 aa11.71□□□□□ -0.53
Shh-201ENSMUST00000002708 Cep192E9Q4Y4 2514 aaKnown RBP11.71□□□□□ -0.53
Shh-201ENSMUST00000002708 Pglyrp4Q0VB07 374 aa11.7□□□□□ -0.54
Shh-201ENSMUST00000002708 Defb42Q8BVB5 75 aa11.69□□□□□ -0.54
Shh-201ENSMUST00000002708 Ndufa3Q9CQ91 84 aa11.69□□□□□ -0.54
Shh-201ENSMUST00000002708 Cd164l2Q9D6W7 172 aa11.69□□□□□ -0.54
Shh-201ENSMUST00000002708 Phpt1Q9DAK9 124 aa11.69□□□□□ -0.54
Shh-201ENSMUST00000002708 Hspg2Q05793 3707 aaKnown RBP11.69□□□□□ -0.54
Shh-201ENSMUST00000002708 Esm1Q9QYY7 184 aa11.69□□□□□ -0.54
Shh-201ENSMUST00000002708 Foxc1Q61572 553 aa11.68□□□□□ -0.54
Shh-201ENSMUST00000002708 TeppQ6IMH0 216 aa11.68□□□□□ -0.54
Shh-201ENSMUST00000002708 Gatd1Q8BFQ8 220 aa11.68□□□□□ -0.54
Shh-201ENSMUST00000002708 Cox6cQ9CPQ1 76 aa11.68□□□□□ -0.54
Shh-201ENSMUST00000002708 Timm17bQ9Z0V7 172 aa11.68□□□□□ -0.54
Shh-201ENSMUST00000002708 Zfp462B1AWL2 2495 aaKnown RBP11.68□□□□□ -0.54
Shh-201ENSMUST00000002708 P01745 121 aa11.67□□□□□ -0.54
Shh-201ENSMUST00000002708 4930442H23RikQ9D5G7 103 aa11.67□□□□□ -0.54
Shh-201ENSMUST00000002708 Gm7257D3YX25 99 aa11.67□□□□□ -0.54
Shh-201ENSMUST00000002708 Nop10Q9CQS2 64 aa11.67□□□□□ -0.54
Shh-201ENSMUST00000002708 4930544G11RikQ9CR99 193 aa11.67□□□□□ -0.54
Shh-201ENSMUST00000002708 Ighv1-62-1A0A075B5U3 116 aa11.66□□□□□ -0.54
Shh-201ENSMUST00000002708 Trav13-4-dv7A0A075B6C2 110 aa11.66□□□□□ -0.54
Shh-201ENSMUST00000002708 Trav9d-4A0A0G2JG37 103 aa11.66□□□□□ -0.54
Shh-201ENSMUST00000002708 Trav4d-3A0A075B625 110 aa11.65□□□□□ -0.54
Shh-201ENSMUST00000002708 Rpl35aO55142 110 aa11.65□□□□□ -0.54
Shh-201ENSMUST00000002708 Gm17472A0A075B683 117 aa11.65□□□□□ -0.54
Shh-201ENSMUST00000002708 Trav9d-3A0A075B695 113 aa11.65□□□□□ -0.54
Shh-201ENSMUST00000002708 Trav4-3A0A0B4J1K1 110 aa11.65□□□□□ -0.54
Shh-201ENSMUST00000002708 1700011M02RikB1AX35 88 aa11.65□□□□□ -0.54
Shh-201ENSMUST00000002708 CirbpP60824 172 aaKnown RBP11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 1700010B08RikQ9DAI7 102 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Tfpi2O35536 230 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Cd99Q8VCN6 175 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 NipblQ6KCD5 2798 aaKnown RBP11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Trav3-4A0A075B654 114 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Sh2d1aO88890 126 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Defa1P11477 93 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Plac8l1Q08EJ0 177 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Xlr5cQ9JJR2 179 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Crlf1Q9JM58 425 aa11.64□□□□□ -0.55
Shh-201ENSMUST00000002708 Gm10735Q3US96 136 aa11.63□□□□□ -0.55
Shh-201ENSMUST00000002708 SelenowP63300 88 aa11.63□□□□□ -0.55
Shh-201ENSMUST00000002708 Rpl36aP83882 106 aaKnown RBP11.62□□□□□ -0.55
Shh-201ENSMUST00000002708 Pfn2Q9JJV2 140 aa11.62□□□□□ -0.55
Shh-201ENSMUST00000002708 C2cd3Q52KB6 2323 aa11.62□□□□□ -0.55
Shh-201ENSMUST00000002708 Lst1O08843 95 aa11.62□□□□□ -0.55
Shh-201ENSMUST00000002708 Tmem213Q08EA8 116 aa11.61□□□□□ -0.55
Shh-201ENSMUST00000002708 PkigO70139 76 aa11.61□□□□□ -0.55
Shh-201ENSMUST00000002708 Fxyd5P97808 178 aa11.61□□□□□ -0.55
Shh-201ENSMUST00000002708 Cdc42se2Q8BGH7 84 aa11.61□□□□□ -0.55
Shh-201ENSMUST00000002708 Trav14d-3-dv8A0A075B619 120 aa11.6□□□□□ -0.55
Shh-201ENSMUST00000002708 Gm10647E9Q8X0 124 aa11.6□□□□□ -0.55
Shh-201ENSMUST00000002708 Smim20D3Z7Q2 69 aa11.6□□□□□ -0.55
Shh-201ENSMUST00000002708 Gm904Q3V2L5 102 aa11.6□□□□□ -0.55
Shh-201ENSMUST00000002708 Myo18bE9PV66 2605 aa11.6□□□□□ -0.55
Shh-201ENSMUST00000002708 Gm28539A0A087WSL9 92 aa11.59□□□□□ -0.55
Shh-201ENSMUST00000002708 Igkv1-35A0A0G2JDE5 120 aa11.59□□□□□ -0.55
Shh-201ENSMUST00000002708 Akap13E9Q394 2776 aa11.58□□□□□ -0.56
Shh-201ENSMUST00000002708 Trav11A0A0B4J1J9 114 aa11.58□□□□□ -0.56
Shh-201ENSMUST00000002708 B230359F08RikA0A0B4J1K3 109 aa11.58□□□□□ -0.56
Shh-201ENSMUST00000002708 Defb29Q8BGW9 78 aa11.58□□□□□ -0.56
Shh-201ENSMUST00000002708 Cox7a1P56392 80 aa11.57□□□□□ -0.56
Shh-201ENSMUST00000002708 Gm3250E9Q1M3 230 aa11.56□□□□□ -0.56
Shh-201ENSMUST00000002708 Ighv1-61P01749 117 aa11.56□□□□□ -0.56
Shh-201ENSMUST00000002708 PemtQ61907 199 aa11.56□□□□□ -0.56
Shh-201ENSMUST00000002708 MalO09198 153 aa11.56□□□□□ -0.56
Shh-201ENSMUST00000002708 Bles03Q8VD62 251 aa11.56□□□□□ -0.56
Shh-201ENSMUST00000002708 Lyrm9Q3UN90 78 aa11.55□□□□□ -0.56
Shh-201ENSMUST00000002708 Defa16P50714 93 aa11.55□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 51.8 ms