Protein–RNA interactions for Protein: A0A0G2JG37

Trav9d-4, T cell receptor alpha variable 9D-4 (Fragment), mousemouse

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9d-4A0A0G2JG37 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav9d-4A0A0G2JG37 Gm25239-201ENSMUST00000174915 86 ntBASIC22.62■■□□□ 1.21
Trav9d-4A0A0G2JG37 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
Trav9d-4A0A0G2JG37 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav9d-4A0A0G2JG37 Psd-208ENSMUST00000224556 2034 ntBASIC21.81■■□□□ 1.08
Trav9d-4A0A0G2JG37 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav9d-4A0A0G2JG37 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav9d-4A0A0G2JG37 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav9d-4A0A0G2JG37 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav9d-4A0A0G2JG37 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav9d-4A0A0G2JG37 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trav9d-4A0A0G2JG37 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav9d-4A0A0G2JG37 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trav9d-4A0A0G2JG37 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trav9d-4A0A0G2JG37 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav9d-4A0A0G2JG37 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trav9d-4A0A0G2JG37 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trav9d-4A0A0G2JG37 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trav9d-4A0A0G2JG37 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.47■□□□□ 0.87
Trav9d-4A0A0G2JG37 Gm15042-201ENSMUST00000120212 883 ntBASIC20.34■□□□□ 0.85
Trav9d-4A0A0G2JG37 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav9d-4A0A0G2JG37 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Trav9d-4A0A0G2JG37 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav9d-4A0A0G2JG37 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav9d-4A0A0G2JG37 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Trav9d-4A0A0G2JG37 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav9d-4A0A0G2JG37 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav9d-4A0A0G2JG37 Gm15045-201ENSMUST00000117359 883 ntBASIC19.97■□□□□ 0.79
Trav9d-4A0A0G2JG37 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav9d-4A0A0G2JG37 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Trav9d-4A0A0G2JG37 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav9d-4A0A0G2JG37 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav9d-4A0A0G2JG37 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.85■□□□□ 0.77
Trav9d-4A0A0G2JG37 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trav9d-4A0A0G2JG37 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC19.75■□□□□ 0.75
Trav9d-4A0A0G2JG37 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC19.75■□□□□ 0.75
Trav9d-4A0A0G2JG37 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trav9d-4A0A0G2JG37 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav9d-4A0A0G2JG37 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.71■□□□□ 0.75
Trav9d-4A0A0G2JG37 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav9d-4A0A0G2JG37 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trav9d-4A0A0G2JG37 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.65■□□□□ 0.74
Trav9d-4A0A0G2JG37 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trav9d-4A0A0G2JG37 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.56■□□□□ 0.72
Trav9d-4A0A0G2JG37 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav9d-4A0A0G2JG37 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav9d-4A0A0G2JG37 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav9d-4A0A0G2JG37 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav9d-4A0A0G2JG37 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav9d-4A0A0G2JG37 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.41■□□□□ 0.7
Trav9d-4A0A0G2JG37 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trav9d-4A0A0G2JG37 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trav9d-4A0A0G2JG37 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav9d-4A0A0G2JG37 Gm24109-201ENSMUST00000175489 103 ntBASIC19.34■□□□□ 0.69
Trav9d-4A0A0G2JG37 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trav9d-4A0A0G2JG37 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trav9d-4A0A0G2JG37 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav9d-4A0A0G2JG37 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav9d-4A0A0G2JG37 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav9d-4A0A0G2JG37 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trav9d-4A0A0G2JG37 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav9d-4A0A0G2JG37 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav9d-4A0A0G2JG37 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav9d-4A0A0G2JG37 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Trav9d-4A0A0G2JG37 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav9d-4A0A0G2JG37 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav9d-4A0A0G2JG37 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav9d-4A0A0G2JG37 Gm23366-201ENSMUST00000175022 89 ntBASIC19.03■□□□□ 0.64
Trav9d-4A0A0G2JG37 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.03■□□□□ 0.64
Trav9d-4A0A0G2JG37 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav9d-4A0A0G2JG37 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav9d-4A0A0G2JG37 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav9d-4A0A0G2JG37 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav9d-4A0A0G2JG37 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav9d-4A0A0G2JG37 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav9d-4A0A0G2JG37 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav9d-4A0A0G2JG37 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav9d-4A0A0G2JG37 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trav9d-4A0A0G2JG37 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav9d-4A0A0G2JG37 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav9d-4A0A0G2JG37 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav9d-4A0A0G2JG37 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav9d-4A0A0G2JG37 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav9d-4A0A0G2JG37 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav9d-4A0A0G2JG37 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav9d-4A0A0G2JG37 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.71■□□□□ 0.59
Trav9d-4A0A0G2JG37 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav9d-4A0A0G2JG37 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trav9d-4A0A0G2JG37 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trav9d-4A0A0G2JG37 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trav9d-4A0A0G2JG37 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trav9d-4A0A0G2JG37 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav9d-4A0A0G2JG37 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.57■□□□□ 0.56
Trav9d-4A0A0G2JG37 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav9d-4A0A0G2JG37 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav9d-4A0A0G2JG37 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9d-4A0A0G2JG37 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9d-4A0A0G2JG37 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9d-4A0A0G2JG37 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9d-4A0A0G2JG37 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 7.3 ms