Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Gm25239-201ENSMUST00000174915 86 ntBASIC26.83■■□□□ 1.89
Foxc1Q61572 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Foxc1Q61572 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Foxc1Q61572 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Foxc1Q61572 Gm15042-201ENSMUST00000120212 883 ntBASIC23.6■■□□□ 1.37
Foxc1Q61572 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Foxc1Q61572 Gm24109-201ENSMUST00000175489 103 ntBASIC23.34■■□□□ 1.33
Foxc1Q61572 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Foxc1Q61572 Gm15045-201ENSMUST00000117359 883 ntBASIC23.08■■□□□ 1.29
Foxc1Q61572 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Foxc1Q61572 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Foxc1Q61572 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Foxc1Q61572 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Foxc1Q61572 Gm23366-201ENSMUST00000175022 89 ntBASIC22.46■■□□□ 1.19
Foxc1Q61572 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Foxc1Q61572 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.2■■□□□ 1.14
Foxc1Q61572 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Foxc1Q61572 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Foxc1Q61572 Psd-208ENSMUST00000224556 2034 ntBASIC22.04■■□□□ 1.12
Foxc1Q61572 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Foxc1Q61572 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Foxc1Q61572 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Foxc1Q61572 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Foxc1Q61572 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.78■■□□□ 1.08
Foxc1Q61572 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Foxc1Q61572 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Foxc1Q61572 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Foxc1Q61572 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Foxc1Q61572 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.71■■□□□ 1.07
Foxc1Q61572 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Foxc1Q61572 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
Foxc1Q61572 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.58■■□□□ 1.05
Foxc1Q61572 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Foxc1Q61572 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Foxc1Q61572 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Foxc1Q61572 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC21.41■■□□□ 1.02
Foxc1Q61572 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Foxc1Q61572 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Foxc1Q61572 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC21.29■■□□□ 1
Foxc1Q61572 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Foxc1Q61572 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Foxc1Q61572 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Foxc1Q61572 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Foxc1Q61572 Gm25238-201ENSMUST00000174914 89 ntBASIC21.15■□□□□ 0.98
Foxc1Q61572 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.06■□□□□ 0.96
Foxc1Q61572 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Foxc1Q61572 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Foxc1Q61572 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Foxc1Q61572 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Foxc1Q61572 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Foxc1Q61572 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Foxc1Q61572 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Foxc1Q61572 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.74■□□□□ 0.91
Foxc1Q61572 Gm27325-201ENSMUST00000175467 74 ntBASIC20.71■□□□□ 0.91
Foxc1Q61572 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.7■□□□□ 0.9
Foxc1Q61572 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Foxc1Q61572 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Foxc1Q61572 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Foxc1Q61572 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.6■□□□□ 0.89
Foxc1Q61572 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.55■□□□□ 0.88
Foxc1Q61572 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.53■□□□□ 0.88
Foxc1Q61572 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Foxc1Q61572 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Foxc1Q61572 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Foxc1Q61572 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Foxc1Q61572 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Foxc1Q61572 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Foxc1Q61572 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.44■□□□□ 0.86
Foxc1Q61572 Gm25262-201ENSMUST00000174934 133 ntBASIC20.44■□□□□ 0.86
Foxc1Q61572 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Foxc1Q61572 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Foxc1Q61572 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Foxc1Q61572 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Foxc1Q61572 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Foxc1Q61572 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Foxc1Q61572 CT025624.2-201ENSMUST00000223609 1909 ntBASIC20.27■□□□□ 0.84
Foxc1Q61572 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Foxc1Q61572 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Foxc1Q61572 Rab21-202ENSMUST00000218831 843 ntBASIC20.22■□□□□ 0.83
Foxc1Q61572 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Foxc1Q61572 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.19■□□□□ 0.82
Foxc1Q61572 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.17■□□□□ 0.82
Foxc1Q61572 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Foxc1Q61572 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20.13■□□□□ 0.81
Foxc1Q61572 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Foxc1Q61572 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Foxc1Q61572 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.09■□□□□ 0.81
Foxc1Q61572 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.07■□□□□ 0.8
Foxc1Q61572 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Foxc1Q61572 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Foxc1Q61572 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Foxc1Q61572 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Foxc1Q61572 Gm26115-201ENSMUST00000175605 87 ntBASIC19.99■□□□□ 0.79
Foxc1Q61572 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Foxc1Q61572 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Foxc1Q61572 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Foxc1Q61572 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Foxc1Q61572 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Foxc1Q61572 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Foxc1Q61572 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms