RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Gm5819E9PZ96 154 aa12.3□□□□□ -0.44
Shh-201ENSMUST00000002708 Cd69P37217 199 aa12.3□□□□□ -0.44
Shh-201ENSMUST00000002708 Prss29Q99MS4 279 aa12.3□□□□□ -0.44
Shh-201ENSMUST00000002708 Abca12E9Q876 2595 aa12.3□□□□□ -0.44
Shh-201ENSMUST00000002708 Vamp8O70404 101 aa12.29□□□□□ -0.44
Shh-201ENSMUST00000002708 Egr2P08152 470 aa12.29□□□□□ -0.44
Shh-201ENSMUST00000002708 Hoxd3P09027 433 aa12.29□□□□□ -0.44
Shh-201ENSMUST00000002708 Usmg5Q78IK2 58 aa12.29□□□□□ -0.44
Shh-201ENSMUST00000002708 AamdcQ8R0P4 122 aa12.29□□□□□ -0.44
Shh-201ENSMUST00000002708 Ighv1-58A0A075B5W9 117 aa12.29□□□□□ -0.44
Shh-201ENSMUST00000002708 Ccl25O35903 144 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 P01750 117 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm9961Q8BNV2 113 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 3110018I06RikQ9CXS0 120 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 Esp4A8R0T8 117 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 LhbO09108 141 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 P06328 117 aa12.28□□□□□ -0.44
Shh-201ENSMUST00000002708 Foxi2Q3I5G5 311 aa12.27□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm1553Q66VB7 94 aa12.27□□□□□ -0.44
Shh-201ENSMUST00000002708 2310009B15RikA0A0A6YWI4 143 aa12.27□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm10226O88253 85 aa12.27□□□□□ -0.45
Shh-201ENSMUST00000002708 Fam222aQ6PGH4 453 aa12.27□□□□□ -0.45
Shh-201ENSMUST00000002708 Ptpn13Q64512 2453 aa12.27□□□□□ -0.45
Shh-201ENSMUST00000002708 C1qcQ02105 246 aa12.26□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm45785A0A1B0GT05 94 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 Spag11Q8K4N2 71 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 PmvkQ9D1G2 192 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm11565A2A4M7 156 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm17455G3UW87 128 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm10553J3QPF1 123 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 P01812 117 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 NrepQ07475 68 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 Triap1Q9D8Z2 76 aa12.25□□□□□ -0.45
Shh-201ENSMUST00000002708 Srsf9Q9D0B0 222 aaKnown RBP12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Tspan13Q9D8C2 204 aa12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Klk7Q91VE3 249 aa12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Q9D8Q6 235 aa12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Gcn1E9PVA8 2671 aaKnown RBP12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm2564F6Z9S8 108 aa12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Trav2Q5R1I9 109 aa12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Chd9Q8BYH8 2885 aa12.24□□□□□ -0.45
Shh-201ENSMUST00000002708 Ighv1-64A0A075B5X3 117 aa12.23□□□□□ -0.45
Shh-201ENSMUST00000002708 Ighv1-50A0A075B5W1 117 aa12.23□□□□□ -0.45
Shh-201ENSMUST00000002708 Ighv8-12A0A0G2JDE1 119 aa12.23□□□□□ -0.45
Shh-201ENSMUST00000002708 Ighv14-1A0A075B5R4 117 aa12.22□□□□□ -0.45
Shh-201ENSMUST00000002708 Igkv4-69A0A0B4J1I6 116 aa12.22□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm10295Q8CCF3 114 aa12.22□□□□□ -0.45
Shh-201ENSMUST00000002708 Runx1Q03347 451 aa12.22□□□□□ -0.45
Shh-201ENSMUST00000002708 Ighv1-75A0A075B5Y2 117 aa12.21□□□□□ -0.45
Shh-201ENSMUST00000002708 Ighv3-3A0A0A6YWL2 116 aa12.21□□□□□ -0.45
Shh-201ENSMUST00000002708 Gm21994F6T2D2 329 aa12.21□□□□□ -0.46
Shh-201ENSMUST00000002708 Defb18Q30KP5 85 aa12.21□□□□□ -0.46
Shh-201ENSMUST00000002708 Cox8cA6H666 72 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Rab37Q9JKM7 223 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Trbv17A0A140T8P8 114 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Lgals6O54891 301 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 P01896 185 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Ube2d1P61080 147 aaKnown RBP12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Mllt11P97783 90 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Zc2hc1bQ9D534 172 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Znf580Q9DB38 172 aa12.2□□□□□ -0.46
Shh-201ENSMUST00000002708 Ighv1-12A0A0A6YXJ9 117 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 F11rO88792 300 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Lrcol1Q3URS3 161 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Samd5Q3V1H9 173 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Wfdc15aQ8BH89 80 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 AY761184Q9D848 116 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Nat8b-psE0CYC6 232 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Cited2O35740 269 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Polr2kQ63871 58 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Gphb5Q812B2 130 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Cysltr1Q99JA4 352 aa12.19□□□□□ -0.46
Shh-201ENSMUST00000002708 Gm21748Q3UE70 102 aa12.18□□□□□ -0.46
Shh-201ENSMUST00000002708 Ighv12-3A0A075B5T1 117 aa12.18□□□□□ -0.46
Shh-201ENSMUST00000002708 Q5BN45 167 aa12.18□□□□□ -0.46
Shh-201ENSMUST00000002708 Spata45Q9CVW4 97 aa12.18□□□□□ -0.46
Shh-201ENSMUST00000002708 Cryba4Q9JJV0 196 aa12.18□□□□□ -0.46
Shh-201ENSMUST00000002708 C920008G01RikA0A0B4J1N1 112 aa12.17□□□□□ -0.46
Shh-201ENSMUST00000002708 Bri3P28662 125 aa12.17□□□□□ -0.46
Shh-201ENSMUST00000002708 Ndufb4Q9CQC7 129 aa12.17□□□□□ -0.46
Shh-201ENSMUST00000002708 Cyyr1Q8VIH7 165 aa12.17□□□□□ -0.46
Shh-201ENSMUST00000002708 Gemin7Q9CWY4 129 aa12.17□□□□□ -0.46
Shh-201ENSMUST00000002708 Clec5aQ9R007 190 aa12.17□□□□□ -0.46
Shh-201ENSMUST00000002708 Gm35549A0A0N4SUS7 141 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 P01811 117 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 Trav3-1Q5R1I8 114 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 CckP09240 115 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 FcorP0DJI6 106 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 Bahcc1Q3UHR0 2643 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 Nav3Q80TN7 2359 aa12.16□□□□□ -0.46
Shh-201ENSMUST00000002708 Usp9xP70398 2559 aaKnown RBP12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Ovol2Q8CIV7 274 aa12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Ankrd39Q9D2X0 183 aa12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Lyzl4Q9D925 145 aa12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Zfyve26Q5DU37 2529 aa12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Usp24B1AY13 2617 aaKnown RBP12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Muc2Q80Z19 2680 aa12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Cdip1Q9DB75 208 aa12.15□□□□□ -0.46
Shh-201ENSMUST00000002708 Rpl36-ps4A0A140T8U4 117 aa12.15□□□□□ -0.47
Shh-201ENSMUST00000002708 Krtap26-1Q9D7N2 215 aa12.15□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 39.8 ms