Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trav3-1Q5R1I8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trav3-1Q5R1I8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Trav3-1Q5R1I8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
Trav3-1Q5R1I8 Psd-208ENSMUST00000224556 2034 ntBASIC21.59■■□□□ 1.05
Trav3-1Q5R1I8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
Trav3-1Q5R1I8 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trav3-1Q5R1I8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav3-1Q5R1I8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Trav3-1Q5R1I8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav3-1Q5R1I8 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav3-1Q5R1I8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav3-1Q5R1I8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav3-1Q5R1I8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav3-1Q5R1I8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav3-1Q5R1I8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav3-1Q5R1I8 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trav3-1Q5R1I8 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav3-1Q5R1I8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Trav3-1Q5R1I8 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.45■□□□□ 0.86
Trav3-1Q5R1I8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav3-1Q5R1I8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav3-1Q5R1I8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Trav3-1Q5R1I8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav3-1Q5R1I8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Trav3-1Q5R1I8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav3-1Q5R1I8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav3-1Q5R1I8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav3-1Q5R1I8 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav3-1Q5R1I8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav3-1Q5R1I8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav3-1Q5R1I8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav3-1Q5R1I8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav3-1Q5R1I8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.96■□□□□ 0.79
Trav3-1Q5R1I8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trav3-1Q5R1I8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trav3-1Q5R1I8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trav3-1Q5R1I8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19.64■□□□□ 0.74
Trav3-1Q5R1I8 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.61■□□□□ 0.73
Trav3-1Q5R1I8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trav3-1Q5R1I8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Trav3-1Q5R1I8 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav3-1Q5R1I8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.56■□□□□ 0.72
Trav3-1Q5R1I8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Trav3-1Q5R1I8 Zxda-201ENSMUST00000117281 2621 ntBASIC19.52■□□□□ 0.72
Trav3-1Q5R1I8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav3-1Q5R1I8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav3-1Q5R1I8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav3-1Q5R1I8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trav3-1Q5R1I8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav3-1Q5R1I8 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav3-1Q5R1I8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trav3-1Q5R1I8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav3-1Q5R1I8 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav3-1Q5R1I8 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav3-1Q5R1I8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav3-1Q5R1I8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav3-1Q5R1I8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav3-1Q5R1I8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav3-1Q5R1I8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.14■□□□□ 0.65
Trav3-1Q5R1I8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.14■□□□□ 0.65
Trav3-1Q5R1I8 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav3-1Q5R1I8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav3-1Q5R1I8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Trav3-1Q5R1I8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav3-1Q5R1I8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav3-1Q5R1I8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav3-1Q5R1I8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Trav3-1Q5R1I8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
Trav3-1Q5R1I8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav3-1Q5R1I8 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Trav3-1Q5R1I8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav3-1Q5R1I8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-1Q5R1I8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Trav3-1Q5R1I8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav3-1Q5R1I8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav3-1Q5R1I8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trav3-1Q5R1I8 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav3-1Q5R1I8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav3-1Q5R1I8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav3-1Q5R1I8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Trav3-1Q5R1I8 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trav3-1Q5R1I8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3-1Q5R1I8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3-1Q5R1I8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav3-1Q5R1I8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav3-1Q5R1I8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3-1Q5R1I8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav3-1Q5R1I8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav3-1Q5R1I8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav3-1Q5R1I8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav3-1Q5R1I8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav3-1Q5R1I8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav3-1Q5R1I8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav3-1Q5R1I8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.63■□□□□ 0.57
Trav3-1Q5R1I8 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav3-1Q5R1I8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trav3-1Q5R1I8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav3-1Q5R1I8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav3-1Q5R1I8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms