RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Znrf2Q71FD5 238 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 9430069I07RikQ9CX21 111 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Q8C708 225 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Rbmy1bQ60990 380 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Gm10762Q9CZN6 115 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Smim10l1A0A087WNQ7 89 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Ighv1-19A0A0A6YWX0 117 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Tmem213Q08EA8 116 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Mustn1Q99JI1 82 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Igkv5-37A0A140T8N4 115 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Pde6gP09174 87 aa13.17□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Zfp36P22893 319 aaKnown RBP13.16□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Gm16503Q8C6M9 103 aa13.16□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Foxl2O88470 375 aa13.16□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Gm44973A0A140LJJ1 189 aa13.16□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 ElnP54320 860 aa13.16□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Pom121l2Q5SW25 972 aa13.16□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Gm10384Q3UQ87 92 aa13.15□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Sox16Q62247 57 aa13.15□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Atp6v0e2Q91XE7 81 aa13.15□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Tmem263Q9DAM7 115 aa13.15□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Notch2O35516 2470 aa13.15□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Foxs1Q61574 329 aa13.15□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Lst1O08843 95 aa13.15□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 CtsgP28293 261 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ttc28Q80XJ3 2450 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gm26558Q8BLW8 286 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Runx1Q03347 451 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 BC048562Q80ZQ7 204 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 SptssbQ925E8 76 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gm4861Q8C5A4 106 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 NpsP0C0P8 89 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Igll1P20764 209 aa13.14□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Glrp1E9Q9S8 174 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gm15294V9GXA7 121 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Igkv12-89A0A0G2JGW8 112 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 LoxP28301 411 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ang5Q5GAN1 145 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Lrp4Q8VI56 1905 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ang4Q3TMQ6 144 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gtsf1Q9DAN6 167 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Olfr311Q5NC59 308 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Tmem210Q9D2F0 147 aa13.13□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Igkv8-26A0A075B5N5 123 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 SelenowP63300 88 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Spink12Q9D256 87 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Timm17aQ9Z0V8 171 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Zc2hc1bQ9D534 172 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ighv1-64A0A075B5X3 117 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Q99M08 65 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Wfdc2Q9DAU7 174 aa13.12□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Klk11Q9QYN3 276 aa13.11□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ighv1-4A0A075B5T4 117 aa13.11□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ighv1-58A0A075B5W9 117 aa13.11□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 P01790 122 aa13.11□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Cysrt1Q9D1E4 142 aa13.11□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Tmem52Q9D702 196 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ly6c1P0CW02 131 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Defb26Q30KN7 186 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ighv1-50A0A075B5W1 117 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 SelenokQ9JLJ1 94 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gm10295Q8CCF3 114 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ighv1-74A0A0G2JGK2 117 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Nbl1Q61477 178 aa13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Rnf138Q9CQE0 245 aaKnown RBP13.1□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gata3P23772 443 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ube2bP63147 152 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Psmb11Q8BG41 302 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Prr3Q811B5 190 aaKnown RBP13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Lyg1Q9D7Q0 197 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 AmelxP63277 210 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Hrct1Q9D6B9 109 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Gm20726G3UX18 150 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ccl21aP84444 133 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ccl21bP86792 133 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Ccl21cP86793 133 aa13.09□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Reg3gO09049 174 aa13.08□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 P01739 132 aa13.08□□□□□ -0.31
Ccdc88a-201ENSMUST00000040182 Fhl4Q8CDC8 279 aa13.08□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 4930546C10RikE9Q4Y3 121 aa13.08□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 P01630 113 aa13.08□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Ly6g6dQ9Z1Q3 135 aa13.08□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Egr2P08152 470 aa13.08□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Loxl1P97873 607 aa13.08□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Smim20D3Z7Q2 69 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Cela2aP05208 271 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Ighv8-4A0A0A6YW26 117 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Prop1P97458 223 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Rmi2Q3UPE3 149 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Znrd1Q791N7 123 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Gm37988J3QM41 62 aa13.07□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 PpbpQ9EQI5 113 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Ankhd1E9PUR0 2548 aaKnown RBP13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Msrb3Q8BU85 253 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Gm9970F6ZED4 185 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Zic4Q61467 341 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 C730034F03RikQ8BGL5 111 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Cox7b2Q9D2H1 82 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 Dmrtc1c1Q9D410 238 aa13.06□□□□□ -0.32
Ccdc88a-201ENSMUST00000040182 P01792 123 aa13.06□□□□□ -0.32
Retrieved 100 of 22,080 RNA–protein pairs in 44.4 ms