RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Srsf1Q6PDM2 248 aaKnown RBP12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 Rpl11Q9CXW4 178 aaKnown RBP12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 LrbaQ9ESE1 2856 aa12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 4930447F04RikA2AFR2 126 aa12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 Defa24Q5G865 93 aa12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 Shisa9Q9CZN4 424 aa12.41□□□□□ -0.42
Shh-201ENSMUST00000002708 Igkv4-57-1A0A075B5M4 119 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Ighv3-8A0A075B5T0 131 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Esp3J3QN49 87 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 P01747 120 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Obox1Q9D350 204 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 LystP97412 3788 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Gm45753A0A1C7CYU8 86 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Umad1E0CX23 159 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 P06334 169 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Smim1P0C8K7 78 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Tex26Q0VB26 296 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Mustn1Q99JI1 82 aa12.4□□□□□ -0.42
Shh-201ENSMUST00000002708 Hbb-bsA8DUK4 147 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 Insl3O09107 122 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 Mrps12O35680 139 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 Hbb-b1P02088 147 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 Cox7cP17665 63 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 Dpm3Q9D1Q4 92 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 OtogO55225 2910 aa12.39□□□□□ -0.43
Shh-201ENSMUST00000002708 Ighv1-9A0A0A6YW37 117 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Igkv4-70A0A0B4J1I5 116 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Defa3P28310 93 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Defa10P50708 93 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Defa15P50713 93 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Sumo2P61957 95 aaKnown RBP12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Chd8Q09XV5 2582 aaKnown RBP12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Tcte2E9PY37 120 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 RhohQ9D3G9 191 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Csn3P06796 181 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Sdhaf1Q3U276 118 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Tal2Q62282 108 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Samd10Q7TST3 202 aa12.38□□□□□ -0.43
Shh-201ENSMUST00000002708 Ankhd1E9PUR0 2548 aaKnown RBP12.37□□□□□ -0.43
Shh-201ENSMUST00000002708 Igkv2-137A0A0B4J1H6 120 aa12.37□□□□□ -0.43
Shh-201ENSMUST00000002708 Gm42674D3YUT9 64 aa12.37□□□□□ -0.43
Shh-201ENSMUST00000002708 P01643 108 aa12.37□□□□□ -0.43
Shh-201ENSMUST00000002708 Tmem170bP86050 132 aa12.37□□□□□ -0.43
Shh-201ENSMUST00000002708 Uqcrfs1Q9CR68 274 aa12.37□□□□□ -0.43
Shh-201ENSMUST00000002708 Ndufa4Q62425 82 aaKnown RBP12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Q9CX63 252 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Pla2g2aP31482 146 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Cdx4Q07424 282 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Gm21370Q3T9V6 190 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Tctex1d4Q8CDY7 219 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 SNORCQ9CXL7 121 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Rbmxl2Q9DAE2 385 aaKnown RBP12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Nit2Q9JHW2 276 aa12.36□□□□□ -0.43
Shh-201ENSMUST00000002708 Ighv1-82A0A0G2JEU7 117 aa12.35□□□□□ -0.43
Shh-201ENSMUST00000002708 Chac1Q8R3J5 223 aa12.35□□□□□ -0.43
Shh-201ENSMUST00000002708 Pradc1Q9D9N8 188 aa12.35□□□□□ -0.43
Shh-201ENSMUST00000002708 Sigmar1O55242 223 aa12.35□□□□□ -0.43
Shh-201ENSMUST00000002708 Ss18Q62280 418 aa12.35□□□□□ -0.43
Shh-201ENSMUST00000002708 Psmb11Q8BG41 302 aa12.34□□□□□ -0.43
Shh-201ENSMUST00000002708 TctaQ8VEA7 122 aa12.34□□□□□ -0.43
Shh-201ENSMUST00000002708 Gm37988J3QM41 62 aa12.34□□□□□ -0.43
Shh-201ENSMUST00000002708 P04219 140 aa12.34□□□□□ -0.43
Shh-201ENSMUST00000002708 PlaurP35456 327 aa12.34□□□□□ -0.43
Shh-201ENSMUST00000002708 LbhQ9CX60 105 aa12.34□□□□□ -0.43
Shh-201ENSMUST00000002708 Igkv4-74A0A0B4J1I3 119 aa12.33□□□□□ -0.43
Shh-201ENSMUST00000002708 Sprr3O09116 238 aa12.33□□□□□ -0.43
Shh-201ENSMUST00000002708 Rpl39P62892 51 aa12.33□□□□□ -0.43
Shh-201ENSMUST00000002708 Tmem14cQ9CQN6 114 aa12.33□□□□□ -0.43
Shh-201ENSMUST00000002708 Klk5Q9D140 293 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 HampQ9EQ21 83 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 Pgpep1Q9ESW8 209 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm28044L7N1X0 119 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 P01837 106 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm5629P06327 117 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 Pcp4P63054 62 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 SrarpQ3ULG3 163 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 Foxi1Q922I5 372 aa12.33□□□□□ -0.44
Shh-201ENSMUST00000002708 Fam240aJ3QNP9 97 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 P01726 129 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 P01739 132 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 Atp6v0bQ91V37 205 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 Plac1Q9JI83 173 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 MdfiP70331 251 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm94Q3V2D2 93 aa12.32□□□□□ -0.44
Shh-201ENSMUST00000002708 Trav6-4A0A075B6B4 115 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm28269A0A087WSG3 125 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Tmem262D3Z338 116 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Tcrg-C3L7N479 172 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Ccl19O70460 108 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 P03985 172 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Defb45Q3V490 66 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Olfr313Q5NC55 308 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Q9DAB9 146 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 FlncQ8VHX6 2726 aaKnown RBP12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Gm10271F6WY25 52 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 MsmbO08540 113 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Gpr82Q8BZR0 328 aa12.31□□□□□ -0.44
Shh-201ENSMUST00000002708 Ormdl2Q9CQZ0 153 aa12.3□□□□□ -0.44
Shh-201ENSMUST00000002708 Nbeal1E9PYP2 2688 aa12.3□□□□□ -0.44
Shh-201ENSMUST00000002708 Celsr2Q9R0M0 2920 aa12.3□□□□□ -0.44
Retrieved 100 of 22,080 RNA–protein pairs in 49.8 ms