Protein–RNA interactions for Protein: A0A075B6B4

Trav6-4, T cell receptor alpha variable 6-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-4A0A075B6B4 Gm25239-201ENSMUST00000174915 86 ntBASIC28.4■■■□□ 2.14
Trav6-4A0A075B6B4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Trav6-4A0A075B6B4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trav6-4A0A075B6B4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trav6-4A0A075B6B4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trav6-4A0A075B6B4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Trav6-4A0A075B6B4 Gm15042-201ENSMUST00000120212 883 ntBASIC25.16■■□□□ 1.62
Trav6-4A0A075B6B4 Gm15045-201ENSMUST00000117359 883 ntBASIC24.6■■□□□ 1.53
Trav6-4A0A075B6B4 Gm24109-201ENSMUST00000175489 103 ntBASIC24.42■■□□□ 1.5
Trav6-4A0A075B6B4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trav6-4A0A075B6B4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trav6-4A0A075B6B4 Psd-208ENSMUST00000224556 2034 ntBASIC24.08■■□□□ 1.45
Trav6-4A0A075B6B4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Trav6-4A0A075B6B4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.95■■□□□ 1.42
Trav6-4A0A075B6B4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Trav6-4A0A075B6B4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Trav6-4A0A075B6B4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Trav6-4A0A075B6B4 Gm23366-201ENSMUST00000175022 89 ntBASIC23.81■■□□□ 1.4
Trav6-4A0A075B6B4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Trav6-4A0A075B6B4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trav6-4A0A075B6B4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Trav6-4A0A075B6B4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trav6-4A0A075B6B4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Trav6-4A0A075B6B4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Trav6-4A0A075B6B4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trav6-4A0A075B6B4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Trav6-4A0A075B6B4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.34■■□□□ 1.33
Trav6-4A0A075B6B4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Trav6-4A0A075B6B4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Trav6-4A0A075B6B4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Trav6-4A0A075B6B4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC23.11■■□□□ 1.29
Trav6-4A0A075B6B4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav6-4A0A075B6B4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.08■■□□□ 1.28
Trav6-4A0A075B6B4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav6-4A0A075B6B4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trav6-4A0A075B6B4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trav6-4A0A075B6B4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trav6-4A0A075B6B4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.68■■□□□ 1.22
Trav6-4A0A075B6B4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav6-4A0A075B6B4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trav6-4A0A075B6B4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.59■■□□□ 1.21
Trav6-4A0A075B6B4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trav6-4A0A075B6B4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav6-4A0A075B6B4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.42■■□□□ 1.18
Trav6-4A0A075B6B4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.39■■□□□ 1.18
Trav6-4A0A075B6B4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav6-4A0A075B6B4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav6-4A0A075B6B4 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.34■■□□□ 1.17
Trav6-4A0A075B6B4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Trav6-4A0A075B6B4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav6-4A0A075B6B4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.32■■□□□ 1.16
Trav6-4A0A075B6B4 Gm25238-201ENSMUST00000174914 89 ntBASIC22.29■■□□□ 1.16
Trav6-4A0A075B6B4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trav6-4A0A075B6B4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trav6-4A0A075B6B4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav6-4A0A075B6B4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav6-4A0A075B6B4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Trav6-4A0A075B6B4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trav6-4A0A075B6B4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trav6-4A0A075B6B4 Gm27325-201ENSMUST00000175467 74 ntBASIC22.09■■□□□ 1.13
Trav6-4A0A075B6B4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav6-4A0A075B6B4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC22.02■■□□□ 1.12
Trav6-4A0A075B6B4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.02■■□□□ 1.12
Trav6-4A0A075B6B4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
Trav6-4A0A075B6B4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
Trav6-4A0A075B6B4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.95■■□□□ 1.1
Trav6-4A0A075B6B4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
Trav6-4A0A075B6B4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav6-4A0A075B6B4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav6-4A0A075B6B4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trav6-4A0A075B6B4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav6-4A0A075B6B4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav6-4A0A075B6B4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav6-4A0A075B6B4 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.81■■□□□ 1.08
Trav6-4A0A075B6B4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Trav6-4A0A075B6B4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav6-4A0A075B6B4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.75■■□□□ 1.07
Trav6-4A0A075B6B4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.73■■□□□ 1.07
Trav6-4A0A075B6B4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trav6-4A0A075B6B4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav6-4A0A075B6B4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.58■■□□□ 1.05
Trav6-4A0A075B6B4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trav6-4A0A075B6B4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
Trav6-4A0A075B6B4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trav6-4A0A075B6B4 Rab21-202ENSMUST00000218831 843 ntBASIC21.5■■□□□ 1.03
Trav6-4A0A075B6B4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav6-4A0A075B6B4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav6-4A0A075B6B4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.44■■□□□ 1.02
Trav6-4A0A075B6B4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav6-4A0A075B6B4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6-4A0A075B6B4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21.4■■□□□ 1.02
Trav6-4A0A075B6B4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6-4A0A075B6B4 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trav6-4A0A075B6B4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.31■■□□□ 1
Trav6-4A0A075B6B4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trav6-4A0A075B6B4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav6-4A0A075B6B4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav6-4A0A075B6B4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trav6-4A0A075B6B4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav6-4A0A075B6B4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 9.6 ms