RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeast

Gene RET3, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RET3	YPL010W	ALG11	P53954	548 aa	Known RBP	4.38	□□□□□ -1.71
RET3	YPL010W	CWC21	Q03375	135 aa	Known RBP	4.38	□□□□□ -1.71
RET3	YPL010W	FUS2	Q05670	677 aa		4.38	□□□□□ -1.71
RET3	YPL010W	ADY4	Q05955	493 aa		4.38	□□□□□ -1.71
RET3	YPL010W	SPE3	Q12074	293 aa	Known RBP	4.38	□□□□□ -1.71
RET3	YPL010W	NBL1	Q3E7Y6	73 aa		4.38	□□□□□ -1.71
RET3	YPL010W	MPD2	Q99316	277 aa		4.38	□□□□□ -1.71
RET3	YPL010W	COX4	P04037	155 aa		4.37	□□□□□ -1.71
RET3	YPL010W	MPH2	P0CD99	609 aa		4.37	□□□□□ -1.71
RET3	YPL010W	MATALPHA2	P0CY08	210 aa		4.37	□□□□□ -1.71
RET3	YPL010W	HMLALPHA2	P0CY09	210 aa		4.37	□□□□□ -1.71
RET3	YPL010W	CBP3	P21560	335 aa		4.37	□□□□□ -1.71
RET3	YPL010W	VPS3	P23643	1011 aa		4.37	□□□□□ -1.71
RET3	YPL010W	CSE1	P33307	960 aa		4.37	□□□□□ -1.71
RET3	YPL010W	VID24	P38263	362 aa		4.37	□□□□□ -1.71
RET3	YPL010W	STT3	P39007	718 aa	Known RBP	4.37	□□□□□ -1.71
RET3	YPL010W	ELO3	P40319	345 aa		4.37	□□□□□ -1.71
RET3	YPL010W	CEP3	P40969	608 aa		4.37	□□□□□ -1.71
RET3	YPL010W	GYP8	P43570	497 aa		4.37	□□□□□ -1.71
RET3	YPL010W	EPL1	P43572	832 aa		4.37	□□□□□ -1.71
RET3	YPL010W	DAS1	P47005	663 aa		4.37	□□□□□ -1.71
RET3	YPL010W	RTC4	P53850	401 aa		4.37	□□□□□ -1.71
RET3	YPL010W	ASI2	P53895	289 aa		4.37	□□□□□ -1.71
RET3	YPL010W	ADA2	Q02336	434 aa		4.37	□□□□□ -1.71
RET3	YPL010W	PDH1	Q12428	516 aa	Known RBP	4.37	□□□□□ -1.71
RET3	YPL010W	PRP4	P20053	465 aa	Known RBP	4.36	□□□□□ -1.71
RET3	YPL010W	PRR1	P28708	518 aa		4.36	□□□□□ -1.71
RET3	YPL010W	ECM32	P32644	1121 aa	Known RBP	4.36	□□□□□ -1.71
RET3	YPL010W	MTH1	P35198	433 aa		4.36	□□□□□ -1.71
RET3	YPL010W	UBP13	P38187	747 aa		4.36	□□□□□ -1.71
RET3	YPL010W	MMS4	P38257	691 aa		4.36	□□□□□ -1.71
RET3	YPL010W	YHL017W	P38745	532 aa		4.36	□□□□□ -1.71
RET3	YPL010W	ALR2	P43553	858 aa		4.36	□□□□□ -1.71
RET3	YPL010W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
RET3	YPL010W	FYV8	P46949	817 aa	Known RBP	4.36	□□□□□ -1.71
RET3	YPL010W	VPS25	P47142	202 aa		4.36	□□□□□ -1.71
RET3	YPL010W	PSP1	P50896	841 aa	Known RBP	4.36	□□□□□ -1.71
RET3	YPL010W	CAF130	P53280	1122 aa	Predicted RBP	4.36	□□□□□ -1.71
RET3	YPL010W	STP1	Q00947	519 aa		4.36	□□□□□ -1.71
RET3	YPL010W	YHM2	Q04013	314 aa		4.36	□□□□□ -1.71
RET3	YPL010W	SPO75	Q07798	868 aa		4.36	□□□□□ -1.71
RET3	YPL010W	ENV7	Q12003	364 aa		4.36	□□□□□ -1.71
RET3	YPL010W	YPR071W	Q12346	211 aa		4.36	□□□□□ -1.71
RET3	YPL010W	HBN1	Q96VH4	193 aa		4.36	□□□□□ -1.71
RET3	YPL010W	TUF1	P02992	437 aa	Known RBP	4.35	□□□□□ -1.71
RET3	YPL010W	SIP3	P38717	1229 aa		4.35	□□□□□ -1.71
RET3	YPL010W	RPP1	P38786	293 aa		4.35	□□□□□ -1.71
RET3	YPL010W	SFB3	P38810	929 aa		4.35	□□□□□ -1.71
RET3	YPL010W	NUP82	P40368	713 aa		4.35	□□□□□ -1.71
RET3	YPL010W	SDS3	P40505	327 aa		4.35	□□□□□ -1.71
RET3	YPL010W	ULP2	P40537	1034 aa	Predicted RBP	4.35	□□□□□ -1.71
RET3	YPL010W	BUD6	P41697	788 aa		4.35	□□□□□ -1.71
RET3	YPL010W	POL31	P46957	487 aa		4.35	□□□□□ -1.71
RET3	YPL010W	ERP6	P53198	216 aa		4.35	□□□□□ -1.71
RET3	YPL010W	SPC98	P53540	846 aa		4.35	□□□□□ -1.71
RET3	YPL010W	NOG2	P53742	486 aa	Known RBP	4.35	□□□□□ -1.71
RET3	YPL010W	YNR061C	P53747	219 aa		4.35	□□□□□ -1.71
RET3	YPL010W	CBK1	P53894	756 aa		4.35	□□□□□ -1.71
RET3	YPL010W	NAN1	Q02931	896 aa	Known RBP	4.35	□□□□□ -1.71
RET3	YPL010W	TRS130	Q03660	1102 aa		4.35	□□□□□ -1.71
RET3	YPL010W	HBT1	Q07653	1046 aa	Known RBP	4.35	□□□□□ -1.71
RET3	YPL010W	LEA1	Q08963	238 aa	Predicted RBP	4.35	□□□□□ -1.71
RET3	YPL010W	TAF10	Q12030	206 aa		4.35	□□□□□ -1.71
RET3	YPL010W	ZPS1	Q12512	249 aa		4.35	□□□□□ -1.71
RET3	YPL010W	GAL80	P04387	435 aa		4.34	□□□□□ -1.71
RET3	YPL010W	SSB1	P11484	613 aa	Known RBP	4.34	□□□□□ -1.71
RET3	YPL010W	CKA2	P19454	339 aa		4.34	□□□□□ -1.71
RET3	YPL010W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
RET3	YPL010W	PPS1	P38148	807 aa		4.34	□□□□□ -1.71
RET3	YPL010W	SSB2	P40150	613 aa	Known RBP	4.34	□□□□□ -1.71
RET3	YPL010W	BTT1	P40314	149 aa	Predicted RBP	4.34	□□□□□ -1.71
RET3	YPL010W	ATF1	P40353	525 aa		4.34	□□□□□ -1.71
RET3	YPL010W	VTC2	P43585	828 aa		4.34	□□□□□ -1.71
RET3	YPL010W	ZAP1	P47043	880 aa		4.34	□□□□□ -1.71
RET3	YPL010W	AMA1	P50082	593 aa		4.34	□□□□□ -1.71
RET3	YPL010W	GND2	P53319	492 aa		4.34	□□□□□ -1.71
RET3	YPL010W	SLG1	P54867	378 aa		4.34	□□□□□ -1.71
RET3	YPL010W	VTC3	Q02725	835 aa		4.34	□□□□□ -1.71
RET3	YPL010W	YMR206W	Q03695	313 aa		4.34	□□□□□ -1.71
RET3	YPL010W	SHS1	Q07657	551 aa		4.34	□□□□□ -1.71
RET3	YPL010W	PSK2	Q08217	1101 aa		4.34	□□□□□ -1.71
RET3	YPL010W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
RET3	YPL010W	APM4	Q99186	491 aa		4.34	□□□□□ -1.71
RET3	YPL010W	MSB2	P32334	1306 aa		4.34	□□□□□ -1.71
RET3	YPL010W	FKS1	P38631	1876 aa	Known RBP	4.33	□□□□□ -1.72
RET3	YPL010W	HSP82	P02829	709 aa	Known RBP	4.33	□□□□□ -1.72
RET3	YPL010W	MTF1	P14908	341 aa	Known RBP	4.33	□□□□□ -1.72
RET3	YPL010W	VPS1	P21576	704 aa	Known RBP	4.33	□□□□□ -1.72
RET3	YPL010W	MSH2	P25847	964 aa		4.33	□□□□□ -1.72
RET3	YPL010W	NGG1	P32494	702 aa		4.33	□□□□□ -1.72
RET3	YPL010W	YSC83	P32792	385 aa		4.33	□□□□□ -1.72
RET3	YPL010W	SPC42	P36094	363 aa		4.33	□□□□□ -1.72
RET3	YPL010W	YBR284W	P38150	797 aa		4.33	□□□□□ -1.72
RET3	YPL010W	YBR053C	P38235	358 aa		4.33	□□□□□ -1.72
RET3	YPL010W	SHE3	P38272	425 aa	Known RBP	4.33	□□□□□ -1.72
RET3	YPL010W	PIH1	P38768	344 aa		4.33	□□□□□ -1.72
RET3	YPL010W	VHR1	P40522	640 aa		4.33	□□□□□ -1.72
RET3	YPL010W	FKH2	P41813	862 aa		4.33	□□□□□ -1.72
RET3	YPL010W	MUP1	P50276	574 aa		4.33	□□□□□ -1.72
RET3	YPL010W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms