Protein–RNA interactions for Protein: P23643

VPS3, Vacuolar protein sorting-associated protein 3, yeastyeast

Predictions only

Length 1,011 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS3P23643 YML009W-BYML009W-B 477 nt21.85■■□□□ 1.09
VPS3P23643 NSR1YGR159C 1245 nt21.57■■□□□ 1.04
VPS3P23643 NOP1YDL014W 984 nt21.39■■□□□ 1.01
VPS3P23643 YKL036CYKL036C 393 nt19.9■□□□□ 0.78
VPS3P23643 MDJ1YFL016C 1536 nt18.87■□□□□ 0.61
VPS3P23643 Q0297Q0297 156 nt18.76■□□□□ 0.59
VPS3P23643 SRX1YKL086W 384 nt18.65■□□□□ 0.58
VPS3P23643 YJL027CYJL027C 417 nt18.61■□□□□ 0.57
VPS3P23643 SCS3YGL126W 1143 nt18.17■□□□□ 0.5
VPS3P23643 YCR051WYCR051W 669 nt17.7■□□□□ 0.42
VPS3P23643 YOL085CYOL085C 342 nt17.21■□□□□ 0.35
VPS3P23643 PKP1YIL042C 1185 nt16.88■□□□□ 0.29
VPS3P23643 RPP1BYDL130W 321 nt16.83■□□□□ 0.28
VPS3P23643 DBP2YNL112W 1641 nt16.78■□□□□ 0.28
VPS3P23643 TRN1tP(UGG)A 72 nt16.73■□□□□ 0.27
VPS3P23643 SUF9tP(UGG)F 72 nt16.73■□□□□ 0.27
VPS3P23643 SUF8tP(UGG)H 72 nt16.73■□□□□ 0.27
VPS3P23643 tP(UGG)LtP(UGG)L 72 nt16.73■□□□□ 0.27
VPS3P23643 SUF7tP(UGG)M 72 nt16.73■□□□□ 0.27
VPS3P23643 tP(UGG)N1tP(UGG)N1 72 nt16.73■□□□□ 0.27
VPS3P23643 tP(UGG)N2tP(UGG)N2 72 nt16.73■□□□□ 0.27
VPS3P23643 tP(UGG)O1tP(UGG)O1 72 nt16.73■□□□□ 0.27
VPS3P23643 SUF11tP(UGG)O2 72 nt16.73■□□□□ 0.27
VPS3P23643 CCC1YLR220W 969 nt16.55■□□□□ 0.24
VPS3P23643 SCJ1YMR214W 1134 nt16.43■□□□□ 0.22
VPS3P23643 ATS1YAL020C 1002 nt16.33■□□□□ 0.2
VPS3P23643 YBR190WYBR190W 312 nt16.1■□□□□ 0.17
VPS3P23643 PET122YER153C 765 nt16.02■□□□□ 0.16
VPS3P23643 SCR1SCR1 522 nt15.98■□□□□ 0.15
VPS3P23643 RVS167YDR388W 1449 nt15.93■□□□□ 0.14
VPS3P23643 tP(UGG)O3tP(UGG)O3 72 nt15.89■□□□□ 0.13
VPS3P23643 RTC3YHR087W 336 nt15.75■□□□□ 0.11
VPS3P23643 RRN5YLR141W 1092 nt15.59■□□□□ 0.09
VPS3P23643 YDJ1YNL064C 1230 nt15.4■□□□□ 0.06
VPS3P23643 SHR5YOL110W 714 nt15.39■□□□□ 0.05
VPS3P23643 RSB1YOR049C 1065 nt15.35■□□□□ 0.05
VPS3P23643 YER088W-BYER088W-B 147 nt15.28■□□□□ 0.04
VPS3P23643 PST2YDR032C 597 nt15.08■□□□□ 0
VPS3P23643 GAR1YHR089C 618 nt14.99□□□□□ -0.01
VPS3P23643 DEP1YAL013W 1218 nt14.83□□□□□ -0.04
VPS3P23643 URN1YPR152C 1398 nt14.81□□□□□ -0.04
VPS3P23643 RPN10YHR200W 807 nt14.7□□□□□ -0.06
VPS3P23643 YNL208WYNL208W 600 nt14.68□□□□□ -0.06
VPS3P23643 YKL097CYKL097C 411 nt14.62□□□□□ -0.07
VPS3P23643 SSA3YBL075C 1950 nt14.62□□□□□ -0.07
VPS3P23643 OPI9YLR338W 858 nt14.55□□□□□ -0.08
VPS3P23643 TIR1YER011W 765 nt14.48□□□□□ -0.09
VPS3P23643 PUT4YOR348C 1884 nt14.4□□□□□ -0.1
VPS3P23643 SHU1YHL006C 453 nt14.39□□□□□ -0.11
VPS3P23643 SAH1YER043C 1350 nt14.37□□□□□ -0.11
VPS3P23643 SSA1YAL005C 1929 nt14.23□□□□□ -0.13
VPS3P23643 ARE1YCR048W 1833 nt14.21□□□□□ -0.13
VPS3P23643 PUN1YLR414C 792 nt14.17□□□□□ -0.14
VPS3P23643 YJR018WYJR018W 363 nt14.15□□□□□ -0.14
VPS3P23643 YAL037C-BYAL037C-B 975 nt14.08□□□□□ -0.16
VPS3P23643 YHR049C-AYHR049C-A 297 nt14.04□□□□□ -0.16
VPS3P23643 POA1YBR022W 534 nt13.98□□□□□ -0.17
VPS3P23643 RPP2BYDR382W 333 nt13.97□□□□□ -0.17
VPS3P23643 SRB2YHR041C 633 nt13.97□□□□□ -0.17
VPS3P23643 YOR139CYOR139C 393 nt13.94□□□□□ -0.18
VPS3P23643 PTC2YER089C 1395 nt13.92□□□□□ -0.18
VPS3P23643 YGR021WYGR021W 873 nt13.91□□□□□ -0.18
VPS3P23643 YJR120WYJR120W 351 nt13.9□□□□□ -0.18
VPS3P23643 WWM1YFL010C 636 nt13.86□□□□□ -0.19
VPS3P23643 NPL3YDR432W 1245 nt13.84□□□□□ -0.19
VPS3P23643 HOM6YJR139C 1080 nt13.83□□□□□ -0.2
VPS3P23643 MNP1YGL068W 585 nt13.75□□□□□ -0.21
VPS3P23643 BUD23YCR047C 828 nt13.74□□□□□ -0.21
VPS3P23643 NAB2YGL122C 1578 nt13.73□□□□□ -0.21
VPS3P23643 BDH2YAL061W 1254 nt13.69□□□□□ -0.22
VPS3P23643 YFL021C-AYFL021C-A 855 nt13.68□□□□□ -0.22
VPS3P23643 YOL037CYOL037C 354 nt13.68□□□□□ -0.22
VPS3P23643 INM2YDR287W 879 nt13.65□□□□□ -0.22
VPS3P23643 BSC6YOL137W 1494 nt13.63□□□□□ -0.23
VPS3P23643 RKM5YLR137W 1104 nt13.63□□□□□ -0.23
VPS3P23643 DAL1YIR027C 1383 nt13.58□□□□□ -0.23
VPS3P23643 LSM3YLR438C-A 270 nt13.58□□□□□ -0.24
VPS3P23643 FPR4YLR449W 1179 nt13.54□□□□□ -0.24
VPS3P23643 YBL100CYBL100C 315 nt13.53□□□□□ -0.24
VPS3P23643 FIS1YIL065C 468 nt13.51□□□□□ -0.25
VPS3P23643 PHO4YFR034C 939 nt13.44□□□□□ -0.26
VPS3P23643 TRM9YML014W 840 nt13.42□□□□□ -0.26
VPS3P23643 tM(CAU)CtM(CAU)C 72 nt13.41□□□□□ -0.26
VPS3P23643 IMT4tM(CAU)E 72 nt13.41□□□□□ -0.26
VPS3P23643 IMT3tM(CAU)J3 72 nt13.41□□□□□ -0.26
VPS3P23643 IMT1tM(CAU)O1 72 nt13.41□□□□□ -0.26
VPS3P23643 IMT2tM(CAU)P 72 nt13.41□□□□□ -0.26
VPS3P23643 FUN26YAL022C 1554 nt13.37□□□□□ -0.27
VPS3P23643 YLR281CYLR281C 468 nt13.32□□□□□ -0.28
VPS3P23643 PUS2YGL063W 1113 nt13.25□□□□□ -0.29
VPS3P23643 WHI5YOR083W 888 nt13.25□□□□□ -0.29
VPS3P23643 CCT6YDR188W 1641 nt13.24□□□□□ -0.29
VPS3P23643 SUF2tP(AGG)C 72 nt13.17□□□□□ -0.3
VPS3P23643 SUF10tP(AGG)N 72 nt13.17□□□□□ -0.3
VPS3P23643 ALF1YNL148C 765 nt13.17□□□□□ -0.3
VPS3P23643 YPS1YLR120C 1710 nt13.1□□□□□ -0.31
VPS3P23643 YLR154C-GYLR154C-G 150 nt13.07□□□□□ -0.32
VPS3P23643 YDR095CYDR095C 411 nt13.06□□□□□ -0.32
VPS3P23643 IMP2'YIL154C 1041 nt13.02□□□□□ -0.33
VPS3P23643 DSK2YMR276W 1122 nt13□□□□□ -0.33
Retrieved 100 of 7,029 protein–RNA pairs in 13.1 ms