RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 STARD9Q9P2P6 4700 aa6.67□□□□□ -1.34
CNOT3-210ENST00000618939 KRTAP3-2Q9BYR7 98 aa6.66□□□□□ -1.34
CNOT3-210ENST00000618939 ALMS1Q8TCU4 4167 aa6.64□□□□□ -1.35
CNOT3-210ENST00000618939 DNHD1Q96M86 4753 aa6.64□□□□□ -1.35
CNOT3-210ENST00000618939 KRTAP10-10P60014 251 aa6.55□□□□□ -1.36
CNOT3-210ENST00000618939 DNAH8Q96JB1 4490 aa6.55□□□□□ -1.36
CNOT3-210ENST00000618939 DNAH2Q9P225 4427 aa6.54□□□□□ -1.36
CNOT3-210ENST00000618939 PRKDCP78527 4128 aaKnown RBP6.53□□□□□ -1.36
CNOT3-210ENST00000618939 DNAH3Q8TD57 4116 aa6.52□□□□□ -1.37
CNOT3-210ENST00000618939 LRP1BQ9NZR2 4599 aa6.51□□□□□ -1.37
CNOT3-210ENST00000618939 ANK2Q01484 3957 aa6.51□□□□□ -1.37
CNOT3-210ENST00000618939 DYNC1H1Q14204 4646 aaKnown RBP6.48□□□□□ -1.37
CNOT3-210ENST00000618939 FAT1Q14517 4588 aa6.47□□□□□ -1.37
CNOT3-210ENST00000618939 KRTAP4-5Q9BYR2 181 aa6.44□□□□□ -1.38
CNOT3-210ENST00000618939 KMT2AQ03164 3969 aa6.43□□□□□ -1.38
CNOT3-210ENST00000618939 CMYA5Q8N3K9 4069 aa6.4□□□□□ -1.38
CNOT3-210ENST00000618939 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
CNOT3-210ENST00000618939 SACSQ9NZJ4 4579 aa6.33□□□□□ -1.4
CNOT3-210ENST00000618939 LYSTQ99698 3801 aa6.32□□□□□ -1.4
CNOT3-210ENST00000618939 PRO2289Q9P1D8 64 aa6.28□□□□□ -1.4
CNOT3-210ENST00000618939 VPS13BQ7Z7G8 4022 aa6.26□□□□□ -1.41
CNOT3-210ENST00000618939 FAT2Q9NYQ8 4349 aa6.25□□□□□ -1.41
CNOT3-210ENST00000618939 KRTAP15-1Q3LI76 137 aa6.24□□□□□ -1.41
CNOT3-210ENST00000618939 FRAS1Q86XX4 4008 aa6.24□□□□□ -1.41
CNOT3-210ENST00000618939 DNAH7Q8WXX0 4024 aa6.22□□□□□ -1.41
CNOT3-210ENST00000618939 HECTD4Q9Y4D8 3996 aa6.21□□□□□ -1.41
CNOT3-210ENST00000618939 LORP23490 312 aaPredicted RBP6.21□□□□□ -1.42
CNOT3-210ENST00000618939 DNAH6Q9C0G6 4158 aa6.19□□□□□ -1.42
CNOT3-210ENST00000618939 RYR1P21817 5038 aa6.18□□□□□ -1.42
CNOT3-210ENST00000618939 MYCBP2O75592 4640 aa6.13□□□□□ -1.43
CNOT3-210ENST00000618939 APOBP04114 4563 aaKnown RBP6.12□□□□□ -1.43
CNOT3-210ENST00000618939 KIAA1109Q2LD37 5005 aa6.1□□□□□ -1.43
CNOT3-210ENST00000618939 KRTAP4-1Q9BYQ7 146 aa6.09□□□□□ -1.44
CNOT3-210ENST00000618939 HYDINQ4G0P3 5121 aa6.03□□□□□ -1.44
CNOT3-210ENST00000618939 LRP1Q07954 4544 aaKnown RBP6.03□□□□□ -1.44
CNOT3-210ENST00000618939 RYR3Q15413 4870 aa6□□□□□ -1.45
CNOT3-210ENST00000618939 KRTAP17-1Q9BYP8 105 aa5.97□□□□□ -1.45
CNOT3-210ENST00000618939 KRTAP23-1A1A580 65 aa5.93□□□□□ -1.46
CNOT3-210ENST00000618939 RYR2Q92736 4967 aa5.93□□□□□ -1.46
CNOT3-210ENST00000618939 FAT3Q8TDW7 4589 aa5.91□□□□□ -1.46
CNOT3-210ENST00000618939 PKHD1P08F94 4074 aa5.91□□□□□ -1.46
CNOT3-210ENST00000618939 KRTAP10-12P60413 245 aa5.87□□□□□ -1.47
CNOT3-210ENST00000618939 LCE3AQ5TA76 89 aa5.84□□□□□ -1.48
CNOT3-210ENST00000618939 PKD1P98161 4303 aa5.81□□□□□ -1.48
CNOT3-210ENST00000618939 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
CNOT3-210ENST00000618939 LRP2P98164 4655 aa5.76□□□□□ -1.49
CNOT3-210ENST00000618939 MT1HP80294 61 aa5.72□□□□□ -1.49
CNOT3-210ENST00000618939 HSPG2P98160 4391 aa5.72□□□□□ -1.49
CNOT3-210ENST00000618939 SPRR2GQ9BYE4 73 aa5.72□□□□□ -1.49
CNOT3-210ENST00000618939 MT2AP02795 61 aa5.68□□□□□ -1.5
CNOT3-210ENST00000618939 INE1O15225 51 aa5.67□□□□□ -1.5
CNOT3-210ENST00000618939 KMT2CQ8NEZ4 4911 aaKnown RBP5.66□□□□□ -1.5
CNOT3-210ENST00000618939 HERC2O95714 4834 aa5.64□□□□□ -1.51
CNOT3-210ENST00000618939 MT1FP04733 61 aa5.61□□□□□ -1.51
CNOT3-210ENST00000618939 PKHD1L1Q86WI1 4243 aa5.59□□□□□ -1.52
CNOT3-210ENST00000618939 BIRC6Q9NR09 4857 aa5.53□□□□□ -1.52
CNOT3-210ENST00000618939 TNXBP22105 4242 aa5.52□□□□□ -1.53
CNOT3-210ENST00000618939 KRTAP19-1Q8IUB9 90 aa5.51□□□□□ -1.53
CNOT3-210ENST00000618939 LPAP08519 4548 aa5.49□□□□□ -1.53
CNOT3-210ENST00000618939 KRTAP8-1Q8IUC2 63 aa5.42□□□□□ -1.54
CNOT3-210ENST00000618939 KRTAP19-8Q3LI54 63 aa5.38□□□□□ -1.55
CNOT3-210ENST00000618939 LCE2CQ5TA81 110 aa5.37□□□□□ -1.55
CNOT3-210ENST00000618939 KRTAP19-2Q3LHN2 52 aa5.37□□□□□ -1.55
CNOT3-210ENST00000618939 HERC1Q15751 4861 aa5.36□□□□□ -1.55
CNOT3-210ENST00000618939 EPPK1P58107 5090 aaKnown RBP5.36□□□□□ -1.55
CNOT3-210ENST00000618939 CRCT1Q9UGL9 99 aa5.33□□□□□ -1.56
CNOT3-210ENST00000618939 ABCA13Q86UQ4 5058 aa5.31□□□□□ -1.56
CNOT3-210ENST00000618939 KRTAP9-8Q9BYQ0 159 aa5.29□□□□□ -1.56
CNOT3-210ENST00000618939 MUC17Q685J3 4493 aa5.28□□□□□ -1.56
CNOT3-210ENST00000618939 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
CNOT3-210ENST00000618939 MT1BP07438 61 aa5.26□□□□□ -1.57
CNOT3-210ENST00000618939 MT1XP80297 61 aa5.26□□□□□ -1.57
CNOT3-210ENST00000618939 PCLOQ9Y6V0 5065 aa5.26□□□□□ -1.57
CNOT3-210ENST00000618939 KRTAP10-7P60409 375 aaPredicted RBP5.25□□□□□ -1.57
CNOT3-210ENST00000618939 KRTAP10-5P60370 271 aa5.22□□□□□ -1.57
CNOT3-210ENST00000618939 FLGP20930 4061 aaPredicted RBP5.19□□□□□ -1.58
CNOT3-210ENST00000618939 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
CNOT3-210ENST00000618939 LCE3CQ5T5A8 94 aa5.18□□□□□ -1.58
CNOT3-210ENST00000618939 KRTAP9-3Q9BYQ3 159 aa5.12□□□□□ -1.59
CNOT3-210ENST00000618939 KRTAP19-4Q3LI73 84 aa5□□□□□ -1.61
CNOT3-210ENST00000618939 KRTAP4-8A0A0G2JLE6 195 aa4.96□□□□□ -1.62
CNOT3-210ENST00000618939 KRTAP4-8Q9BYQ9 185 aa4.96□□□□□ -1.62
CNOT3-210ENST00000618939 RNF213Q63HN8 5207 aa4.95□□□□□ -1.62
CNOT3-210ENST00000618939 FAT4Q6V0I7 4981 aa4.94□□□□□ -1.62
CNOT3-210ENST00000618939 MUC2Q02817 5179 aa4.92□□□□□ -1.62
CNOT3-210ENST00000618939 LCE2BO14633 110 aa4.91□□□□□ -1.62
CNOT3-210ENST00000618939 HMCN2Q8NDA2 5059 aa4.9□□□□□ -1.63
CNOT3-210ENST00000618939 SPRR2FQ96RM1 72 aa4.89□□□□□ -1.63
CNOT3-210ENST00000618939 UBR4Q5T4S7 5183 aa4.86□□□□□ -1.63
CNOT3-210ENST00000618939 FSIP2Q5CZC0 6907 aa4.78□□□□□ -1.64
CNOT3-210ENST00000618939 KRTAP4-7Q9BYR0 210 aa4.71□□□□□ -1.66
CNOT3-210ENST00000618939 MT1GP13640 62 aa4.7□□□□□ -1.66
CNOT3-210ENST00000618939 MT1LQ93083 61 aa4.68□□□□□ -1.66
CNOT3-210ENST00000618939 MT1EP04732 61 aa4.66□□□□□ -1.66
CNOT3-210ENST00000618939 LCE2AQ5TA79 106 aaPredicted RBP4.62□□□□□ -1.67
CNOT3-210ENST00000618939 LCE3BQ5TA77 95 aa4.57□□□□□ -1.68
CNOT3-210ENST00000618939 KRTAP19-3Q7Z4W3 81 aa4.56□□□□□ -1.68
CNOT3-210ENST00000618939 KRTAP19-7Q3SYF9 63 aa4.55□□□□□ -1.68
CNOT3-210ENST00000618939 KRTAP9-2Q9BYQ4 174 aa4.54□□□□□ -1.68
CNOT3-210ENST00000618939 KRTAP12-4P60329 112 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms