RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 NISCHQ9Y2I1 1504 aa25.56■■□□□ 1.68
CNOT3-210ENST00000618939 DCAF8L2P0C7V8 631 aa24.13■■□□□ 1.45
CNOT3-210ENST00000618939 SUPT5HO00267 1087 aaKnown RBP23.58■■□□□ 1.37
CNOT3-210ENST00000618939 SHROOM4Q9ULL8 1493 aa23.5■■□□□ 1.35
CNOT3-210ENST00000618939 EHMT2Q96KQ7 1210 aa22.25■■□□□ 1.15
CNOT3-210ENST00000618939 PCGF6Q9BYE7 350 aa22.14■■□□□ 1.14
CNOT3-210ENST00000618939 FAM9AQ8IZU1 332 aaPredicted RBP22.05■■□□□ 1.12
CNOT3-210ENST00000618939 TRIM41Q8WV44 630 aa21.89■■□□□ 1.09
CNOT3-210ENST00000618939 CHIC1Q5VXU3 224 aa21.82■■□□□ 1.08
CNOT3-210ENST00000618939 ZEB1P37275 1124 aaPredicted RBP21.54■■□□□ 1.04
CNOT3-210ENST00000618939 APLP2Q06481 763 aa21.54■■□□□ 1.04
CNOT3-210ENST00000618939 TTBK1Q5TCY1 1321 aaPredicted RBP21.53■■□□□ 1.04
CNOT3-210ENST00000618939 LOC105371045A0A1W2PR82 267 aa21.51■■□□□ 1.03
CNOT3-210ENST00000618939 HRCP23327 699 aa21.5■■□□□ 1.03
CNOT3-210ENST00000618939 TRIM26Q12899 539 aaPredicted RBP21.42■■□□□ 1.02
CNOT3-210ENST00000618939 ZCCHC6Q5VYS8 1495 aaKnown RBP21.37■■□□□ 1.01
CNOT3-210ENST00000618939 CCER1Q8TC90 406 aaPredicted RBP21.33■■□□□ 1
CNOT3-210ENST00000618939 UBTFP17480 764 aaKnown RBP21.29■■□□□ 1
CNOT3-210ENST00000618939 PPARGC1BQ86YN6 1023 aaKnown RBP21.23■□□□□ 0.99
CNOT3-210ENST00000618939 RANGAP1P46060 587 aaPredicted RBP21.21■□□□□ 0.99
CNOT3-210ENST00000618939 CCDC180Q9P1Z9 1646 aa21.14■□□□□ 0.97
CNOT3-210ENST00000618939 ABCC9O60706 1549 aa21.1■□□□□ 0.97
CNOT3-210ENST00000618939 CENPBP07199 599 aaPredicted RBP21.01■□□□□ 0.95
CNOT3-210ENST00000618939 PELP1Q8IZL8 1130 aaKnown RBP20.91■□□□□ 0.94
CNOT3-210ENST00000618939 ATP1B4Q9UN42 357 aaPredicted RBP20.77■□□□□ 0.91
CNOT3-210ENST00000618939 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
CNOT3-210ENST00000618939 PABPN1Q86U42 306 aaKnown RBP eCLIP20.7■□□□□ 0.9
CNOT3-210ENST00000618939 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.7■□□□□ 0.9
CNOT3-210ENST00000618939 DCAF1Q9Y4B6 1507 aa20.65■□□□□ 0.9
CNOT3-210ENST00000618939 MYO15BQ96JP2 1530 aa20.65■□□□□ 0.9
CNOT3-210ENST00000618939 YTHDC1Q96MU7 727 aaKnown RBP20.65■□□□□ 0.9
CNOT3-210ENST00000618939 HNRNPUL2Q1KMD3 747 aaKnown RBP20.64■□□□□ 0.9
CNOT3-210ENST00000618939 ITGAEP38570 1179 aa20.47■□□□□ 0.87
CNOT3-210ENST00000618939 RSF1Q96T23 1441 aaPredicted RBP20.45■□□□□ 0.86
CNOT3-210ENST00000618939 DIEXFQ68CQ4 756 aaKnown RBP20.43■□□□□ 0.86
CNOT3-210ENST00000618939 CSRNP3Q8WYN3 585 aa20.41■□□□□ 0.86
CNOT3-210ENST00000618939 NEFLP07196 543 aa20.2■□□□□ 0.82
CNOT3-210ENST00000618939 NACADO15069 1562 aa20.18■□□□□ 0.82
CNOT3-210ENST00000618939 RB1CC1Q8TDY2 1594 aa20.12■□□□□ 0.81
CNOT3-210ENST00000618939 ZNF316A6NFI3 1004 aaPredicted RBP20.1■□□□□ 0.81
CNOT3-210ENST00000618939 FAM50AQ14320 339 aaKnown RBP20.07■□□□□ 0.8
CNOT3-210ENST00000618939 CECR2Q9BXF3 1484 aa20.04■□□□□ 0.8
CNOT3-210ENST00000618939 GTF3C3Q9Y5Q9 886 aa20.01■□□□□ 0.79
CNOT3-210ENST00000618939 ACIN1Q9UKV3 1341 aaKnown RBP19.95■□□□□ 0.78
CNOT3-210ENST00000618939 ERICH6Q7L0X2 663 aa19.95■□□□□ 0.78
CNOT3-210ENST00000618939 MYT1Q01538 1121 aa19.92■□□□□ 0.78
CNOT3-210ENST00000618939 BAZ1AQ9NRL2 1556 aaPredicted RBP19.91■□□□□ 0.78
CNOT3-210ENST00000618939 EEA1Q15075 1411 aa19.91■□□□□ 0.78
CNOT3-210ENST00000618939 NEUROD1Q13562 356 aa19.9■□□□□ 0.78
CNOT3-210ENST00000618939 CEP162Q5TB80 1403 aa19.89■□□□□ 0.77
CNOT3-210ENST00000618939 MROH2BQ7Z745 1585 aa19.85■□□□□ 0.77
CNOT3-210ENST00000618939 P3H3Q8IVL6 736 aa19.84■□□□□ 0.77
CNOT3-210ENST00000618939 CLIP1P30622 1438 aa19.83■□□□□ 0.77
CNOT3-210ENST00000618939 GOLGA3Q08378 1498 aa19.81■□□□□ 0.76
CNOT3-210ENST00000618939 WRNQ14191 1432 aaPredicted RBP eCLIP19.81■□□□□ 0.76
CNOT3-210ENST00000618939 TNIKQ9UKE5 1360 aa19.79■□□□□ 0.76
CNOT3-210ENST00000618939 POLR3GLQ9BT43 218 aa19.79■□□□□ 0.76
CNOT3-210ENST00000618939 TRIM52Q96A61 297 aa19.75■□□□□ 0.75
CNOT3-210ENST00000618939 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
CNOT3-210ENST00000618939 CNGB1Q14028 1251 aaPredicted RBP19.67■□□□□ 0.74
CNOT3-210ENST00000618939 CEP164Q9UPV0 1460 aa19.65■□□□□ 0.74
CNOT3-210ENST00000618939 SOGA1O94964 1423 aa19.65■□□□□ 0.74
CNOT3-210ENST00000618939 ANP32CO43423 234 aa19.64■□□□□ 0.74
CNOT3-210ENST00000618939 SCAF1Q9H7N4 1312 aaKnown RBP19.62■□□□□ 0.73
CNOT3-210ENST00000618939 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
CNOT3-210ENST00000618939 WIZO95785 1651 aa19.59■□□□□ 0.73
CNOT3-210ENST00000618939 ABCC8Q09428 1581 aa19.58■□□□□ 0.72
CNOT3-210ENST00000618939 BCANQ96GW7 911 aa19.55■□□□□ 0.72
CNOT3-210ENST00000618939 MIER1Q8N108 512 aa19.52■□□□□ 0.72
CNOT3-210ENST00000618939 ARID3CA6NKF2 412 aa19.52■□□□□ 0.71
CNOT3-210ENST00000618939 MYT1LQ9UL68 1186 aa19.49■□□□□ 0.71
CNOT3-210ENST00000618939 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
CNOT3-210ENST00000618939 TOP2AP11388 1531 aaKnown RBP19.48■□□□□ 0.71
CNOT3-210ENST00000618939 FBLN2P98095 1184 aa19.45■□□□□ 0.7
CNOT3-210ENST00000618939 TONSLQ96HA7 1378 aa19.45■□□□□ 0.7
CNOT3-210ENST00000618939 ZNF326Q5BKZ1 582 aaKnown RBP19.43■□□□□ 0.7
CNOT3-210ENST00000618939 DDX10Q13206 875 aaKnown RBP19.42■□□□□ 0.7
CNOT3-210ENST00000618939 CLSPNQ9HAW4 1339 aa19.4■□□□□ 0.7
CNOT3-210ENST00000618939 MTUS2Q5JR59 1369 aa19.36■□□□□ 0.69
CNOT3-210ENST00000618939 VPS8Q8N3P4 1428 aa19.35■□□□□ 0.69
CNOT3-210ENST00000618939 CDK11AQ9UQ88 783 aaPredicted RBP19.35■□□□□ 0.69
CNOT3-210ENST00000618939 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
CNOT3-210ENST00000618939 ZNF777Q9ULD5 760 aaPredicted RBP19.3■□□□□ 0.68
CNOT3-210ENST00000618939 CHIC2Q9UKJ5 165 aa19.29■□□□□ 0.68
CNOT3-210ENST00000618939 SMARCA2P51531 1590 aa19.28■□□□□ 0.68
CNOT3-210ENST00000618939 FKBP8Q14318 412 aa19.24■□□□□ 0.67
CNOT3-210ENST00000618939 CCNB3Q8WWL7 1395 aa19.22■□□□□ 0.67
CNOT3-210ENST00000618939 HIRIP3Q9BW71 556 aaPredicted RBP19.21■□□□□ 0.67
CNOT3-210ENST00000618939 RUSC2Q8N2Y8 1516 aa19.2■□□□□ 0.66
CNOT3-210ENST00000618939 CUX2O14529 1486 aa19.2■□□□□ 0.66
CNOT3-210ENST00000618939 HNRNPUQ00839 825 aaKnown RBP eCLIP19.18■□□□□ 0.66
CNOT3-210ENST00000618939 CARMIL1Q5VZK9 1371 aa19.18■□□□□ 0.66
CNOT3-210ENST00000618939 DAXXQ9UER7 740 aaPredicted RBP19.17■□□□□ 0.66
CNOT3-210ENST00000618939 KANK4Q5T7N3 995 aaPredicted RBP19.17■□□□□ 0.66
CNOT3-210ENST00000618939 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
CNOT3-210ENST00000618939 RRP7BPQ9NSQ0 103 aa19.13■□□□□ 0.65
CNOT3-210ENST00000618939 FHAD1B1AJZ9 1412 aa19.12■□□□□ 0.65
CNOT3-210ENST00000618939 RAPGEF2Q9Y4G8 1499 aa19.11■□□□□ 0.65
CNOT3-210ENST00000618939 SLC4A1APQ9BWU0 796 aaKnown RBP19.11■□□□□ 0.65
CNOT3-210ENST00000618939 SIN3AQ96ST3 1273 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 500.7 ms