RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 COL7A1Q02388 2944 aa5.87□□□□□ -1.47
PTPN9-206ENST00000618819 KRTAP4-5Q9BYR2 181 aa5.81□□□□□ -1.48
PTPN9-206ENST00000618819 HUWE1Q7Z6Z7 4374 aaKnown RBP5.64□□□□□ -1.51
PTPN9-206ENST00000618819 KRTAP10-4P60372 401 aaPredicted RBP5.63□□□□□ -1.51
PTPN9-206ENST00000618819 KRTAP19-5Q3LI72 72 aa5.57□□□□□ -1.52
PTPN9-206ENST00000618819 KRTAP10-7P60409 375 aaPredicted RBP5.54□□□□□ -1.52
PTPN9-206ENST00000618819 LCE3CQ5T5A8 94 aa5.54□□□□□ -1.52
PTPN9-206ENST00000618819 DNAH3Q8TD57 4116 aa5.53□□□□□ -1.52
PTPN9-206ENST00000618819 CMYA5Q8N3K9 4069 aa5.52□□□□□ -1.53
PTPN9-206ENST00000618819 ANK2Q01484 3957 aa5.51□□□□□ -1.53
PTPN9-206ENST00000618819 CSMD3Q7Z407 3707 aa5.5□□□□□ -1.53
PTPN9-206ENST00000618819 SPRR2FQ96RM1 72 aa5.46□□□□□ -1.53
PTPN9-206ENST00000618819 DNAH9Q9NYC9 4486 aa5.4□□□□□ -1.54
PTPN9-206ENST00000618819 LCE3BQ5TA77 95 aa5.39□□□□□ -1.55
PTPN9-206ENST00000618819 KRTAP4-1Q9BYQ7 146 aa5.39□□□□□ -1.55
PTPN9-206ENST00000618819 MT1HP80294 61 aa5.37□□□□□ -1.55
PTPN9-206ENST00000618819 ALMS1Q8TCU4 4167 aa5.36□□□□□ -1.55
PTPN9-206ENST00000618819 DNAH1Q9P2D7 4330 aa5.33□□□□□ -1.56
PTPN9-206ENST00000618819 HECTD4Q9Y4D8 3996 aa5.33□□□□□ -1.56
PTPN9-206ENST00000618819 MT2AP02795 61 aa5.33□□□□□ -1.56
PTPN9-206ENST00000618819 KRTAP12-4P60329 112 aa5.32□□□□□ -1.56
PTPN9-206ENST00000618819 SPRR2GQ9BYE4 73 aa5.32□□□□□ -1.56
PTPN9-206ENST00000618819 DNAH10Q8IVF4 4471 aa5.3□□□□□ -1.56
PTPN9-206ENST00000618819 LYSTQ99698 3801 aa5.27□□□□□ -1.57
PTPN9-206ENST00000618819 KMT2AQ03164 3969 aa5.26□□□□□ -1.57
PTPN9-206ENST00000618819 DYNC2H1Q8NCM8 4307 aaKnown RBP5.25□□□□□ -1.57
PTPN9-206ENST00000618819 VPS13DQ5THJ4 4388 aa5.25□□□□□ -1.57
PTPN9-206ENST00000618819 DNAH7Q8WXX0 4024 aa5.24□□□□□ -1.57
PTPN9-206ENST00000618819 MT1FP04733 61 aa5.23□□□□□ -1.57
PTPN9-206ENST00000618819 DNAH6Q9C0G6 4158 aa5.23□□□□□ -1.57
PTPN9-206ENST00000618819 PLECQ15149 4684 aaKnown RBP5.22□□□□□ -1.57
PTPN9-206ENST00000618819 FRAS1Q86XX4 4008 aa5.19□□□□□ -1.58
PTPN9-206ENST00000618819 PRKDCP78527 4128 aaKnown RBP5.18□□□□□ -1.58
PTPN9-206ENST00000618819 DNAH2Q9P225 4427 aa5.17□□□□□ -1.58
PTPN9-206ENST00000618819 MT1GP13640 62 aa5.16□□□□□ -1.58
PTPN9-206ENST00000618819 DNAH17Q9UFH2 4485 aa5.15□□□□□ -1.59
PTPN9-206ENST00000618819 VPS13BQ7Z7G8 4022 aa5.13□□□□□ -1.59
PTPN9-206ENST00000618819 DNAH8Q96JB1 4490 aa5.13□□□□□ -1.59
PTPN9-206ENST00000618819 STARD9Q9P2P6 4700 aa5.12□□□□□ -1.59
PTPN9-206ENST00000618819 SPRR2EP22531 72 aa5.09□□□□□ -1.59
PTPN9-206ENST00000618819 SPRR2BP35325 72 aa5.09□□□□□ -1.59
PTPN9-206ENST00000618819 SPRR2AP35326 72 aa5.09□□□□□ -1.59
PTPN9-206ENST00000618819 DNAH5Q8TE73 4624 aa5.05□□□□□ -1.6
PTPN9-206ENST00000618819 DNAH11Q96DT5 4516 aa5.05□□□□□ -1.6
PTPN9-206ENST00000618819 FAT1Q14517 4588 aa5.04□□□□□ -1.6
PTPN9-206ENST00000618819 LCE3DQ9BYE3 92 aa5.03□□□□□ -1.61
PTPN9-206ENST00000618819 KRTAP19-4Q3LI73 84 aa4.98□□□□□ -1.61
PTPN9-206ENST00000618819 FAT2Q9NYQ8 4349 aa4.94□□□□□ -1.62
PTPN9-206ENST00000618819 LCE3EQ5T5B0 92 aa4.93□□□□□ -1.62
PTPN9-206ENST00000618819 SPRR2DP22532 72 aa4.91□□□□□ -1.62
PTPN9-206ENST00000618819 LCE2BO14633 110 aa4.86□□□□□ -1.63
PTPN9-206ENST00000618819 MT1XP80297 61 aa4.85□□□□□ -1.63
PTPN9-206ENST00000618819 KRTAP4-8A0A0G2JLE6 195 aa4.83□□□□□ -1.64
PTPN9-206ENST00000618819 KRTAP4-8Q9BYQ9 185 aa4.83□□□□□ -1.64
PTPN9-206ENST00000618819 LRP1BQ9NZR2 4599 aa4.83□□□□□ -1.64
PTPN9-206ENST00000618819 SPRR5A0A1B0GTR4 108 aa4.82□□□□□ -1.64
PTPN9-206ENST00000618819 KRTAP19-1Q8IUB9 90 aa4.8□□□□□ -1.64
PTPN9-206ENST00000618819 PRM1P04553 51 aa4.78□□□□□ -1.64
PTPN9-206ENST00000618819 KRTAP19-8Q3LI54 63 aa4.77□□□□□ -1.65
PTPN9-206ENST00000618819 PKD1P98161 4303 aa4.76□□□□□ -1.65
PTPN9-206ENST00000618819 PKHD1P08F94 4074 aa4.75□□□□□ -1.65
PTPN9-206ENST00000618819 SACSQ9NZJ4 4579 aa4.72□□□□□ -1.65
PTPN9-206ENST00000618819 KRTAP4-7Q9BYR0 210 aa4.71□□□□□ -1.66
PTPN9-206ENST00000618819 DYNC1H1Q14204 4646 aaKnown RBP4.69□□□□□ -1.66
PTPN9-206ENST00000618819 APOBP04114 4563 aaKnown RBP4.68□□□□□ -1.66
PTPN9-206ENST00000618819 MT1BP07438 61 aa4.66□□□□□ -1.66
PTPN9-206ENST00000618819 PKHD1L1Q86WI1 4243 aa4.64□□□□□ -1.67
PTPN9-206ENST00000618819 DNHD1Q96M86 4753 aa4.6□□□□□ -1.67
PTPN9-206ENST00000618819 LCE2CQ5TA81 110 aa4.58□□□□□ -1.68
PTPN9-206ENST00000618819 LRP1Q07954 4544 aaKnown RBP4.57□□□□□ -1.68
PTPN9-206ENST00000618819 RYR1P21817 5038 aa4.56□□□□□ -1.68
PTPN9-206ENST00000618819 FAT3Q8TDW7 4589 aa4.55□□□□□ -1.68
PTPN9-206ENST00000618819 TNXBP22105 4242 aa4.53□□□□□ -1.68
PTPN9-206ENST00000618819 LCE1BQ5T7P3 118 aa4.53□□□□□ -1.68
PTPN9-206ENST00000618819 LCE2DQ5TA82 110 aaPredicted RBP4.52□□□□□ -1.69
PTPN9-206ENST00000618819 KRTAP19-3Q7Z4W3 81 aa4.5□□□□□ -1.69
PTPN9-206ENST00000618819 LOC100996750A0A140TA64 210 aa4.48□□□□□ -1.69
PTPN9-206ENST00000618819 MT1LQ93083 61 aa4.48□□□□□ -1.69
PTPN9-206ENST00000618819 HYDINQ4G0P3 5121 aa4.48□□□□□ -1.69
PTPN9-206ENST00000618819 KRTAP9-8Q9BYQ0 159 aa4.47□□□□□ -1.69
PTPN9-206ENST00000618819 MT4P47944 62 aa4.47□□□□□ -1.69
PTPN9-206ENST00000618819 HSPG2P98160 4391 aa4.45□□□□□ -1.7
PTPN9-206ENST00000618819 LCE1DQ5T752 114 aa4.45□□□□□ -1.7
PTPN9-206ENST00000618819 MT3P25713 68 aa4.42□□□□□ -1.7
PTPN9-206ENST00000618819 MYCBP2O75592 4640 aa4.41□□□□□ -1.7
PTPN9-206ENST00000618819 KRTAP17-1Q9BYP8 105 aa4.39□□□□□ -1.71
PTPN9-206ENST00000618819 MT1EP04732 61 aa4.38□□□□□ -1.71
PTPN9-206ENST00000618819 KRTAP9-3Q9BYQ3 159 aa4.38□□□□□ -1.71
PTPN9-206ENST00000618819 KRTAP4-3Q9BYR4 195 aa4.34□□□□□ -1.72
PTPN9-206ENST00000618819 KRTAP4-9Q9BYQ8 210 aa4.31□□□□□ -1.72
PTPN9-206ENST00000618819 MT1MQ8N339 61 aa4.29□□□□□ -1.72
PTPN9-206ENST00000618819 RYR3Q15413 4870 aa4.29□□□□□ -1.72
PTPN9-206ENST00000618819 FLGP20930 4061 aaPredicted RBP4.28□□□□□ -1.72
PTPN9-206ENST00000618819 RYR2Q92736 4967 aa4.24□□□□□ -1.73
PTPN9-206ENST00000618819 LRP2P98164 4655 aa4.22□□□□□ -1.73
PTPN9-206ENST00000618819 LPAP08519 4548 aa4.21□□□□□ -1.74
PTPN9-206ENST00000618819 LCE5AQ5TCM9 118 aa4.19□□□□□ -1.74
PTPN9-206ENST00000618819 KIAA1109Q2LD37 5005 aa4.1□□□□□ -1.75
PTPN9-206ENST00000618819 KMT2CQ8NEZ4 4911 aaKnown RBP4.1□□□□□ -1.75
PTPN9-206ENST00000618819 KRTAP19-2Q3LHN2 52 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms