RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 DCAF8L2P0C7V8 631 aa23.98■■□□□ 1.43
PTPN9-206ENST00000618819 PELP1Q8IZL8 1130 aaKnown RBP23.82■■□□□ 1.4
PTPN9-206ENST00000618819 ERICH6Q7L0X2 663 aa23.18■■□□□ 1.3
PTPN9-206ENST00000618819 EHMT2Q96KQ7 1210 aa23.13■■□□□ 1.29
PTPN9-206ENST00000618819 SUPT5HO00267 1087 aaKnown RBP23.09■■□□□ 1.29
PTPN9-206ENST00000618819 CCER1Q8TC90 406 aaPredicted RBP22.72■■□□□ 1.23
PTPN9-206ENST00000618819 MYT1Q01538 1121 aa22.66■■□□□ 1.22
PTPN9-206ENST00000618819 CENPBP07199 599 aaPredicted RBP22.56■■□□□ 1.2
PTPN9-206ENST00000618819 TTBK1Q5TCY1 1321 aaPredicted RBP22.45■■□□□ 1.18
PTPN9-206ENST00000618819 APLP2Q06481 763 aa22.37■■□□□ 1.17
PTPN9-206ENST00000618819 PCGF6Q9BYE7 350 aa22.36■■□□□ 1.17
PTPN9-206ENST00000618819 SHROOM4Q9ULL8 1493 aa22.26■■□□□ 1.15
PTPN9-206ENST00000618819 YTHDC1Q96MU7 727 aaKnown RBP22.24■■□□□ 1.15
PTPN9-206ENST00000618819 NEFLP07196 543 aa22.14■■□□□ 1.13
PTPN9-206ENST00000618819 FAM9AQ8IZU1 332 aaPredicted RBP22.02■■□□□ 1.12
PTPN9-206ENST00000618819 ZEB1P37275 1124 aaPredicted RBP21.87■■□□□ 1.09
PTPN9-206ENST00000618819 DAXXQ9UER7 740 aaPredicted RBP21.81■■□□□ 1.08
PTPN9-206ENST00000618819 RANGAP1P46060 587 aaPredicted RBP21.8■■□□□ 1.08
PTPN9-206ENST00000618819 ATP1B4Q9UN42 357 aaPredicted RBP21.57■■□□□ 1.04
PTPN9-206ENST00000618819 RTL5Q5HYW3 569 aaPredicted RBP21.42■■□□□ 1.02
PTPN9-206ENST00000618819 ZNF316A6NFI3 1004 aaPredicted RBP21.3■■□□□ 1
PTPN9-206ENST00000618819 PPARGC1BQ86YN6 1023 aaKnown RBP21.3■■□□□ 1
PTPN9-206ENST00000618819 POLR3GLQ9BT43 218 aa21.26■□□□□ 0.99
PTPN9-206ENST00000618819 CNGB1Q14028 1251 aaPredicted RBP21.24■□□□□ 0.99
PTPN9-206ENST00000618819 HRCP23327 699 aa21.13■□□□□ 0.97
PTPN9-206ENST00000618819 UBTFP17480 764 aaKnown RBP21.12■□□□□ 0.97
PTPN9-206ENST00000618819 TRIM41Q8WV44 630 aa21.11■□□□□ 0.97
PTPN9-206ENST00000618819 CLSPNQ9HAW4 1339 aa21.09■□□□□ 0.97
PTPN9-206ENST00000618819 BCANQ96GW7 911 aa20.92■□□□□ 0.94
PTPN9-206ENST00000618819 ITGAEP38570 1179 aa20.9■□□□□ 0.94
PTPN9-206ENST00000618819 TRIM26Q12899 539 aaPredicted RBP20.88■□□□□ 0.93
PTPN9-206ENST00000618819 EIF5BO60841 1220 aaKnown RBP20.85■□□□□ 0.93
PTPN9-206ENST00000618819 SLC4A1APQ9BWU0 796 aaKnown RBP20.77■□□□□ 0.92
PTPN9-206ENST00000618819 GTF3C3Q9Y5Q9 886 aa20.72■□□□□ 0.91
PTPN9-206ENST00000618819 DIEXFQ68CQ4 756 aaKnown RBP20.7■□□□□ 0.91
PTPN9-206ENST00000618819 MYT1LQ9UL68 1186 aa20.69■□□□□ 0.9
PTPN9-206ENST00000618819 HNRNPUL2Q1KMD3 747 aaKnown RBP20.66■□□□□ 0.9
PTPN9-206ENST00000618819 CHIC1Q5VXU3 224 aa20.65■□□□□ 0.9
PTPN9-206ENST00000618819 CDK11AQ9UQ88 783 aaPredicted RBP20.62■□□□□ 0.89
PTPN9-206ENST00000618819 BCL11AQ9H165 835 aa20.58■□□□□ 0.89
PTPN9-206ENST00000618819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.5■□□□□ 0.87
PTPN9-206ENST00000618819 GLIPR1L2Q4G1C9 344 aa20.47■□□□□ 0.87
PTPN9-206ENST00000618819 NPM2Q86SE8 214 aaKnown RBP20.41■□□□□ 0.86
PTPN9-206ENST00000618819 ZBTB47Q9UFB7 747 aaPredicted RBP20.4■□□□□ 0.86
PTPN9-206ENST00000618819 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
PTPN9-206ENST00000618819 ANP32AP39687 249 aaKnown RBP20.35■□□□□ 0.85
PTPN9-206ENST00000618819 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
PTPN9-206ENST00000618819 CANXP27824 592 aaKnown RBP20.26■□□□□ 0.83
PTPN9-206ENST00000618819 ANP32BQ92688 251 aaKnown RBP20.25■□□□□ 0.83
PTPN9-206ENST00000618819 NEUROD1Q13562 356 aa20.22■□□□□ 0.83
PTPN9-206ENST00000618819 SLC24A1O60721 1099 aa20.21■□□□□ 0.83
PTPN9-206ENST00000618819 ANP32CO43423 234 aa20.19■□□□□ 0.82
PTPN9-206ENST00000618819 ARXQ96QS3 562 aa20.18■□□□□ 0.82
PTPN9-206ENST00000618819 NBR1Q14596 966 aa20.17■□□□□ 0.82
PTPN9-206ENST00000618819 ACIN1Q9UKV3 1341 aaKnown RBP20.12■□□□□ 0.81
PTPN9-206ENST00000618819 ZNF326Q5BKZ1 582 aaKnown RBP20.08■□□□□ 0.8
PTPN9-206ENST00000618819 TRIM52Q96A61 297 aa20.07■□□□□ 0.8
PTPN9-206ENST00000618819 FAM50AQ14320 339 aaKnown RBP20.06■□□□□ 0.8
PTPN9-206ENST00000618819 HSP90AA1P07900 732 aaKnown RBP20.06■□□□□ 0.8
PTPN9-206ENST00000618819 FKBP8Q14318 412 aa19.97■□□□□ 0.79
PTPN9-206ENST00000618819 UPF2Q9HAU5 1272 aaKnown RBP19.81■□□□□ 0.76
PTPN9-206ENST00000618819 NEFMP07197 916 aa19.79■□□□□ 0.76
PTPN9-206ENST00000618819 TNNT2P45379 298 aaPredicted RBP19.7■□□□□ 0.74
PTPN9-206ENST00000618819 RTN4Q9NQC3 1192 aaKnown RBP19.67■□□□□ 0.74
PTPN9-206ENST00000618819 AMER1Q5JTC6 1135 aaPredicted RBP19.65■□□□□ 0.74
PTPN9-206ENST00000618819 SALL2Q9Y467 1007 aaPredicted RBP19.65■□□□□ 0.74
PTPN9-206ENST00000618819 TRIM44Q96DX7 344 aaPredicted RBP19.62■□□□□ 0.73
PTPN9-206ENST00000618819 HNRNPUQ00839 825 aaKnown RBP eCLIP19.62■□□□□ 0.73
PTPN9-206ENST00000618819 CCDC136Q96JN2 1154 aa19.6■□□□□ 0.73
PTPN9-206ENST00000618819 CDK11BP21127 795 aaKnown RBP19.59■□□□□ 0.73
PTPN9-206ENST00000618819 FAM9BQ8IZU0 186 aa19.58■□□□□ 0.73
PTPN9-206ENST00000618819 IRX6P78412 446 aaPredicted RBP19.55■□□□□ 0.72
PTPN9-206ENST00000618819 NAP1L5Q96NT1 182 aaPredicted RBP19.54■□□□□ 0.72
PTPN9-206ENST00000618819 SCAF1Q9H7N4 1312 aaKnown RBP19.5■□□□□ 0.71
PTPN9-206ENST00000618819 DNTTIP2Q5QJE6 756 aaKnown RBP19.48■□□□□ 0.71
PTPN9-206ENST00000618819 TPRNQ4KMQ1 711 aa19.45■□□□□ 0.7
PTPN9-206ENST00000618819 PTMAP06454 111 aaKnown RBP19.44■□□□□ 0.7
PTPN9-206ENST00000618819 NCLP19338 710 aaKnown RBP19.43■□□□□ 0.7
PTPN9-206ENST00000618819 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.42■□□□□ 0.7
PTPN9-206ENST00000618819 ANP32EQ9BTT0 268 aa19.42■□□□□ 0.7
PTPN9-206ENST00000618819 DDX10Q13206 875 aaKnown RBP19.39■□□□□ 0.69
PTPN9-206ENST00000618819 ERICH6BQ5W0A0 696 aa19.32■□□□□ 0.68
PTPN9-206ENST00000618819 DDRGK1Q96HY6 314 aa19.31■□□□□ 0.68
PTPN9-206ENST00000618819 BECN1Q14457 450 aa19.31■□□□□ 0.68
PTPN9-206ENST00000618819 ARID3CA6NKF2 412 aa19.29■□□□□ 0.68
PTPN9-206ENST00000618819 GOLGA6L22H0YM25 854 aa19.28■□□□□ 0.68
PTPN9-206ENST00000618819 LAS1LQ9Y4W2 734 aaKnown RBP19.28■□□□□ 0.68
PTPN9-206ENST00000618819 ARID4BQ4LE39 1312 aaPredicted RBP19.27■□□□□ 0.68
PTPN9-206ENST00000618819 TULP1O00294 542 aaPredicted RBP19.27■□□□□ 0.68
PTPN9-206ENST00000618819 TMC1Q8TDI8 760 aa19.25■□□□□ 0.67
PTPN9-206ENST00000618819 PLCB2Q00722 1185 aa19.22■□□□□ 0.67
PTPN9-206ENST00000618819 MYH16Q9H6N6 1097 aa19.2■□□□□ 0.66
PTPN9-206ENST00000618819 ZRSR1Q15695 479 aaKnown RBP19.2■□□□□ 0.66
PTPN9-206ENST00000618819 WDR43Q15061 677 aaKnown RBP eCLIP19.18■□□□□ 0.66
PTPN9-206ENST00000618819 ZNF777Q9ULD5 760 aaPredicted RBP19.17■□□□□ 0.66
PTPN9-206ENST00000618819 TONSLQ96HA7 1378 aa19.17■□□□□ 0.66
PTPN9-206ENST00000618819 MRS2Q9HD23 443 aa19.16■□□□□ 0.66
PTPN9-206ENST00000618819 P3H3Q8IVL6 736 aa19.15■□□□□ 0.66
PTPN9-206ENST00000618819 CHGAP10645 457 aaKnown RBP19.14■□□□□ 0.65
PTPN9-206ENST00000618819 ARID3AQ99856 593 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms