RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LORP23490 312 aaPredicted RBP6.12□□□□□ -1.43
CPSF1-212ENST00000616140 DNHD1Q96M86 4753 aa6.12□□□□□ -1.43
CPSF1-212ENST00000616140 KRTAP10-12P60413 245 aa6.11□□□□□ -1.43
CPSF1-212ENST00000616140 DNAH11Q96DT5 4516 aa6.1□□□□□ -1.43
CPSF1-212ENST00000616140 PLECQ15149 4684 aaKnown RBP6.09□□□□□ -1.44
CPSF1-212ENST00000616140 DNAH9Q9NYC9 4486 aa6.07□□□□□ -1.44
CPSF1-212ENST00000616140 FAT1Q14517 4588 aa6.02□□□□□ -1.45
CPSF1-212ENST00000616140 KRTAP12-3P60328 96 aa6□□□□□ -1.45
CPSF1-212ENST00000616140 DNAH1Q9P2D7 4330 aa5.97□□□□□ -1.45
CPSF1-212ENST00000616140 LCE3AQ5TA76 89 aa5.95□□□□□ -1.46
CPSF1-212ENST00000616140 DNAH8Q96JB1 4490 aa5.95□□□□□ -1.46
CPSF1-212ENST00000616140 INE1O15225 51 aa5.93□□□□□ -1.46
CPSF1-212ENST00000616140 CRCT1Q9UGL9 99 aa5.9□□□□□ -1.47
CPSF1-212ENST00000616140 RYR1P21817 5038 aa5.86□□□□□ -1.47
CPSF1-212ENST00000616140 KRTAP4-1Q9BYQ7 146 aa5.84□□□□□ -1.47
CPSF1-212ENST00000616140 DYNC1H1Q14204 4646 aaKnown RBP5.84□□□□□ -1.47
CPSF1-212ENST00000616140 ANK2Q01484 3957 aa5.82□□□□□ -1.48
CPSF1-212ENST00000616140 PRKDCP78527 4128 aaKnown RBP5.82□□□□□ -1.48
CPSF1-212ENST00000616140 VPS13DQ5THJ4 4388 aa5.79□□□□□ -1.48
CPSF1-212ENST00000616140 LRP1BQ9NZR2 4599 aa5.79□□□□□ -1.48
CPSF1-212ENST00000616140 DNAH17Q9UFH2 4485 aa5.77□□□□□ -1.48
CPSF1-212ENST00000616140 MYCBP2O75592 4640 aa5.76□□□□□ -1.49
CPSF1-212ENST00000616140 STARD9Q9P2P6 4700 aa5.76□□□□□ -1.49
CPSF1-212ENST00000616140 DNAH2Q9P225 4427 aa5.75□□□□□ -1.49
CPSF1-212ENST00000616140 SACSQ9NZJ4 4579 aa5.73□□□□□ -1.49
CPSF1-212ENST00000616140 LYSTQ99698 3801 aa5.71□□□□□ -1.49
CPSF1-212ENST00000616140 FRAS1Q86XX4 4008 aa5.69□□□□□ -1.5
CPSF1-212ENST00000616140 CMYA5Q8N3K9 4069 aa5.69□□□□□ -1.5
CPSF1-212ENST00000616140 KIAA1109Q2LD37 5005 aa5.69□□□□□ -1.5
CPSF1-212ENST00000616140 DNAH3Q8TD57 4116 aa5.67□□□□□ -1.5
CPSF1-212ENST00000616140 KMT2AQ03164 3969 aa5.65□□□□□ -1.5
CPSF1-212ENST00000616140 MT1HP80294 61 aa5.6□□□□□ -1.51
CPSF1-212ENST00000616140 APOBP04114 4563 aaKnown RBP5.6□□□□□ -1.51
CPSF1-212ENST00000616140 MT2AP02795 61 aa5.6□□□□□ -1.51
CPSF1-212ENST00000616140 SPRR2GQ9BYE4 73 aa5.58□□□□□ -1.52
CPSF1-212ENST00000616140 KRTAP8-1Q8IUC2 63 aa5.55□□□□□ -1.52
CPSF1-212ENST00000616140 VPS13BQ7Z7G8 4022 aa5.55□□□□□ -1.52
CPSF1-212ENST00000616140 FAT3Q8TDW7 4589 aa5.53□□□□□ -1.52
CPSF1-212ENST00000616140 KRTAP10-5P60370 271 aa5.51□□□□□ -1.53
CPSF1-212ENST00000616140 DNAH7Q8WXX0 4024 aa5.5□□□□□ -1.53
CPSF1-212ENST00000616140 MT1FP04733 61 aa5.5□□□□□ -1.53
CPSF1-212ENST00000616140 DYNC2H1Q8NCM8 4307 aaKnown RBP5.5□□□□□ -1.53
CPSF1-212ENST00000616140 HECTD4Q9Y4D8 3996 aa5.5□□□□□ -1.53
CPSF1-212ENST00000616140 FAT2Q9NYQ8 4349 aa5.5□□□□□ -1.53
CPSF1-212ENST00000616140 RYR3Q15413 4870 aa5.49□□□□□ -1.53
CPSF1-212ENST00000616140 LRP1Q07954 4544 aaKnown RBP5.46□□□□□ -1.54
CPSF1-212ENST00000616140 DNAH6Q9C0G6 4158 aa5.43□□□□□ -1.54
CPSF1-212ENST00000616140 KRTAP17-1Q9BYP8 105 aa5.37□□□□□ -1.55
CPSF1-212ENST00000616140 KRTAP19-5Q3LI72 72 aa5.33□□□□□ -1.56
CPSF1-212ENST00000616140 HYDINQ4G0P3 5121 aa5.33□□□□□ -1.56
CPSF1-212ENST00000616140 LRP2P98164 4655 aa5.31□□□□□ -1.56
CPSF1-212ENST00000616140 KRTAP19-1Q8IUB9 90 aa5.31□□□□□ -1.56
CPSF1-212ENST00000616140 RYR2Q92736 4967 aa5.29□□□□□ -1.56
CPSF1-212ENST00000616140 KMT2CQ8NEZ4 4911 aaKnown RBP5.29□□□□□ -1.56
CPSF1-212ENST00000616140 PKHD1P08F94 4074 aa5.24□□□□□ -1.57
CPSF1-212ENST00000616140 LCE3CQ5T5A8 94 aa5.24□□□□□ -1.57
CPSF1-212ENST00000616140 HERC2O95714 4834 aa5.24□□□□□ -1.57
CPSF1-212ENST00000616140 KRTAP19-8Q3LI54 63 aa5.19□□□□□ -1.58
CPSF1-212ENST00000616140 KRTAP10-7P60409 375 aaPredicted RBP5.19□□□□□ -1.58
CPSF1-212ENST00000616140 SPRR2FQ96RM1 72 aa5.17□□□□□ -1.58
CPSF1-212ENST00000616140 MT1XP80297 61 aa5.1□□□□□ -1.59
CPSF1-212ENST00000616140 PCLOQ9Y6V0 5065 aa5.08□□□□□ -1.6
CPSF1-212ENST00000616140 SYNE1Q8NF91 8797 aaKnown RBP5.07□□□□□ -1.6
CPSF1-212ENST00000616140 MT1BP07438 61 aa5.06□□□□□ -1.6
CPSF1-212ENST00000616140 SPRR5A0A1B0GTR4 108 aa5.05□□□□□ -1.6
CPSF1-212ENST00000616140 KRTAP9-8Q9BYQ0 159 aa5.03□□□□□ -1.6
CPSF1-212ENST00000616140 PKD1P98161 4303 aa5.03□□□□□ -1.6
CPSF1-212ENST00000616140 KRTAP19-4Q3LI73 84 aa5.03□□□□□ -1.6
CPSF1-212ENST00000616140 EPPK1P58107 5090 aaKnown RBP5.02□□□□□ -1.61
CPSF1-212ENST00000616140 HSPG2P98160 4391 aa5.01□□□□□ -1.61
CPSF1-212ENST00000616140 BIRC6Q9NR09 4857 aa5.01□□□□□ -1.61
CPSF1-212ENST00000616140 LCE2CQ5TA81 110 aa4.99□□□□□ -1.61
CPSF1-212ENST00000616140 KRTAP4-8A0A0G2JLE6 195 aa4.95□□□□□ -1.62
CPSF1-212ENST00000616140 KRTAP4-8Q9BYQ9 185 aa4.95□□□□□ -1.62
CPSF1-212ENST00000616140 LPAP08519 4548 aa4.91□□□□□ -1.62
CPSF1-212ENST00000616140 PKHD1L1Q86WI1 4243 aa4.9□□□□□ -1.63
CPSF1-212ENST00000616140 HERC1Q15751 4861 aa4.89□□□□□ -1.63
CPSF1-212ENST00000616140 KRTAP9-3Q9BYQ3 159 aa4.89□□□□□ -1.63
CPSF1-212ENST00000616140 SPRR2EP22531 72 aa4.85□□□□□ -1.63
CPSF1-212ENST00000616140 SPRR2BP35325 72 aa4.85□□□□□ -1.63
CPSF1-212ENST00000616140 SPRR2AP35326 72 aa4.85□□□□□ -1.63
CPSF1-212ENST00000616140 MT1GP13640 62 aa4.84□□□□□ -1.63
CPSF1-212ENST00000616140 ABCA13Q86UQ4 5058 aa4.84□□□□□ -1.63
CPSF1-212ENST00000616140 LCE3BQ5TA77 95 aa4.84□□□□□ -1.64
CPSF1-212ENST00000616140 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
CPSF1-212ENST00000616140 KRTAP12-4P60329 112 aa4.8□□□□□ -1.64
CPSF1-212ENST00000616140 KRTAP19-2Q3LHN2 52 aa4.8□□□□□ -1.64
CPSF1-212ENST00000616140 MUC17Q685J3 4493 aa4.8□□□□□ -1.64
CPSF1-212ENST00000616140 UBR4Q5T4S7 5183 aa4.76□□□□□ -1.65
CPSF1-212ENST00000616140 KRTAP9-6A0A140TA67 174 aa4.76□□□□□ -1.65
CPSF1-212ENST00000616140 FSIP2Q5CZC0 6907 aa4.74□□□□□ -1.65
CPSF1-212ENST00000616140 TNXBP22105 4242 aa4.72□□□□□ -1.65
CPSF1-212ENST00000616140 SPRR2DP22532 72 aa4.7□□□□□ -1.66
CPSF1-212ENST00000616140 LCE2BO14633 110 aa4.69□□□□□ -1.66
CPSF1-212ENST00000616140 KRTAP4-7Q9BYR0 210 aa4.69□□□□□ -1.66
CPSF1-212ENST00000616140 MUC2Q02817 5179 aa4.66□□□□□ -1.66
CPSF1-212ENST00000616140 FLGP20930 4061 aaPredicted RBP4.63□□□□□ -1.67
CPSF1-212ENST00000616140 MT1LQ93083 61 aa4.6□□□□□ -1.67
CPSF1-212ENST00000616140 RNF213Q63HN8 5207 aa4.59□□□□□ -1.68
CPSF1-212ENST00000616140 KRTAP19-3Q7Z4W3 81 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms