RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 SPG11Q96JI7 2443 aa0.58□□□□□ -2.32
SMCHD1-213ENST00000609587 SONP18583 2426 aaKnown RBP0.57□□□□□ -2.32
SMCHD1-213ENST00000609587 KRTAP8-1Q8IUC2 63 aa0.57□□□□□ -2.32
SMCHD1-213ENST00000609587 FLGP20930 4061 aaPredicted RBP0.57□□□□□ -2.32
SMCHD1-213ENST00000609587 TEP1Q99973 2627 aaKnown RBP0.56□□□□□ -2.32
SMCHD1-213ENST00000609587 DNAH1Q9P2D7 4330 aa0.56□□□□□ -2.32
SMCHD1-213ENST00000609587 HTTP42858 3142 aa0.56□□□□□ -2.32
SMCHD1-213ENST00000609587 DNAH6Q9C0G6 4158 aa0.56□□□□□ -2.32
SMCHD1-213ENST00000609587 DNAH10Q8IVF4 4471 aa0.56□□□□□ -2.32
SMCHD1-213ENST00000609587 ACACBO00763 2458 aa0.55□□□□□ -2.32
SMCHD1-213ENST00000609587 H3BNG1 76 aa0.55□□□□□ -2.32
SMCHD1-213ENST00000609587 FRYLO94915 3013 aa0.55□□□□□ -2.32
SMCHD1-213ENST00000609587 ZANQ9Y493 2812 aa0.55□□□□□ -2.32
SMCHD1-213ENST00000609587 AKAP9Q99996 3911 aa0.55□□□□□ -2.32
SMCHD1-213ENST00000609587 NCOR2Q9Y618 2525 aa0.55□□□□□ -2.32
SMCHD1-213ENST00000609587 SPRR2BP35325 72 aa0.54□□□□□ -2.32
SMCHD1-213ENST00000609587 RPL39P5Q59GN2 51 aa0.54□□□□□ -2.32
SMCHD1-213ENST00000609587 CSMD1Q96PZ7 3565 aa0.53□□□□□ -2.32
SMCHD1-213ENST00000609587 USP9XQ93008 2570 aaPredicted RBP0.53□□□□□ -2.32
SMCHD1-213ENST00000609587 TRIOO75962 3097 aa0.53□□□□□ -2.32
SMCHD1-213ENST00000609587 TLN2Q9Y4G6 2542 aa0.53□□□□□ -2.32
SMCHD1-213ENST00000609587 MYO18BQ8IUG5 2567 aa0.53□□□□□ -2.32
SMCHD1-213ENST00000609587 LRBAP50851 2863 aa0.53□□□□□ -2.32
SMCHD1-213ENST00000609587 SYNE1Q8NF91 8797 aaKnown RBP0.53□□□□□ -2.33
SMCHD1-213ENST00000609587 LAMA3Q16787 3333 aa0.53□□□□□ -2.33
SMCHD1-213ENST00000609587 FASNP49327 2511 aaKnown RBP0.53□□□□□ -2.33
SMCHD1-213ENST00000609587 WDR87Q6ZQQ6 2873 aa0.52□□□□□ -2.33
SMCHD1-213ENST00000609587 COL6A3P12111 3177 aa0.52□□□□□ -2.33
SMCHD1-213ENST00000609587 MT1AP04731 61 aa0.52□□□□□ -2.33
SMCHD1-213ENST00000609587 C5orf42Q9H799 3197 aa0.52□□□□□ -2.33
SMCHD1-213ENST00000609587 LRP1BQ9NZR2 4599 aa0.52□□□□□ -2.33
SMCHD1-213ENST00000609587 DNAH12Q6ZR08 3092 aa0.51□□□□□ -2.33
SMCHD1-213ENST00000609587 PRUNE2Q8WUY3 3088 aa0.51□□□□□ -2.33
SMCHD1-213ENST00000609587 MAST4O15021 2626 aa0.51□□□□□ -2.33
SMCHD1-213ENST00000609587 PLECQ15149 4684 aaKnown RBP0.51□□□□□ -2.33
SMCHD1-213ENST00000609587 FAT1Q14517 4588 aa0.51□□□□□ -2.33
SMCHD1-213ENST00000609587 ITPR1Q14643 2758 aa0.51□□□□□ -2.33
SMCHD1-213ENST00000609587 PKHD1P08F94 4074 aa0.5□□□□□ -2.33
SMCHD1-213ENST00000609587 DEFB110Q30KQ9 67 aa0.5□□□□□ -2.33
SMCHD1-213ENST00000609587 KRTAP19-5Q3LI72 72 aa0.5□□□□□ -2.33
SMCHD1-213ENST00000609587 ADGRG4Q8IZF6 3080 aa0.49□□□□□ -2.33
SMCHD1-213ENST00000609587 SZT2Q5T011 3432 aa0.49□□□□□ -2.33
SMCHD1-213ENST00000609587 KRTAP6-2Q3LI66 62 aa0.49□□□□□ -2.33
SMCHD1-213ENST00000609587 NIPBLQ6KC79 2804 aaeCLIP0.49□□□□□ -2.33
SMCHD1-213ENST00000609587 MUC3AQ02505 3323 aa0.49□□□□□ -2.33
SMCHD1-213ENST00000609587 IGSF10Q6WRI0 2623 aa0.49□□□□□ -2.33
SMCHD1-213ENST00000609587 MXRA5Q9NR99 2828 aa0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 TGP01266 2768 aa0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 SPART-AS1P0CW21 52 aa0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 SPRR2AP35326 72 aa0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 MAP1AP78559 2803 aaPredicted RBP0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 TEX15Q9BXT5 2789 aa0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 SMG1Q96Q15 3661 aaKnown RBP0.48□□□□□ -2.33
SMCHD1-213ENST00000609587 MUC5ACP98088 5654 aa0.47□□□□□ -2.33
SMCHD1-213ENST00000609587 MKI67P46013 3256 aaKnown RBP0.47□□□□□ -2.33
SMCHD1-213ENST00000609587 DEFB108AA8MXU0 73 aa0.47□□□□□ -2.33
SMCHD1-213ENST00000609587 SMR3BP02814 79 aaPredicted RBP0.47□□□□□ -2.33
SMCHD1-213ENST00000609587 LAMA1P25391 3075 aa0.47□□□□□ -2.33
SMCHD1-213ENST00000609587 CMYA5Q8N3K9 4069 aa0.46□□□□□ -2.34
SMCHD1-213ENST00000609587 H3BUX3 64 aa0.46□□□□□ -2.34
SMCHD1-213ENST00000609587 DNAH17Q9UFH2 4485 aa0.46□□□□□ -2.34
SMCHD1-213ENST00000609587 TRRAPQ9Y4A5 3859 aa0.45□□□□□ -2.34
SMCHD1-213ENST00000609587 SVEP1Q4LDE5 3571 aa0.45□□□□□ -2.34
SMCHD1-213ENST00000609587 DYNC1H1Q14204 4646 aaKnown RBP0.44□□□□□ -2.34
SMCHD1-213ENST00000609587 MDN1Q9NU22 5596 aa0.44□□□□□ -2.34
SMCHD1-213ENST00000609587 PHGR1C9JFL3 82 aa0.44□□□□□ -2.34
SMCHD1-213ENST00000609587 FLNAP21333 2647 aaKnown RBP0.44□□□□□ -2.34
SMCHD1-213ENST00000609587 ITPR2Q14571 2701 aa0.44□□□□□ -2.34
SMCHD1-213ENST00000609587 SPRR2FQ96RM1 72 aa0.43□□□□□ -2.34
SMCHD1-213ENST00000609587 FREM2Q5SZK8 3169 aa0.43□□□□□ -2.34
SMCHD1-213ENST00000609587 DNAH5Q8TE73 4624 aa0.42□□□□□ -2.34
SMCHD1-213ENST00000609587 SPRR2EP22531 72 aa0.42□□□□□ -2.34
SMCHD1-213ENST00000609587 MGAM2Q2M2H8 2515 aa0.42□□□□□ -2.34
SMCHD1-213ENST00000609587 BOD1L1Q8NFC6 3051 aa0.42□□□□□ -2.34
SMCHD1-213ENST00000609587 HMCN2Q8NDA2 5059 aa0.41□□□□□ -2.34
SMCHD1-213ENST00000609587 DCHS1Q96JQ0 3298 aa0.41□□□□□ -2.34
SMCHD1-213ENST00000609587 MUC17Q685J3 4493 aa0.41□□□□□ -2.34
SMCHD1-213ENST00000609587 DMDP11532 3685 aa0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 NBEAL1Q6ZS30 2694 aa0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 DEFB1P60022 68 aa0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 DEFB124Q8NES8 71 aa0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 RHPN1-AS1Q9BWJ2 59 aa0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 WDFY4Q6ZS81 3184 aa0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 SYNE2Q8WXH0 6885 aaKnown RBP0.4□□□□□ -2.35
SMCHD1-213ENST00000609587 DOPEY1Q5JWR5 2465 aa0.39□□□□□ -2.35
SMCHD1-213ENST00000609587 SPTAN1Q13813 2472 aaKnown RBP0.39□□□□□ -2.35
SMCHD1-213ENST00000609587 XIRP2A4UGR9 3374 aa0.39□□□□□ -2.35
SMCHD1-213ENST00000609587 CSMD2Q7Z408 3487 aa0.39□□□□□ -2.35
SMCHD1-213ENST00000609587 CFAP46Q8IYW2 2715 aa0.38□□□□□ -2.35
SMCHD1-213ENST00000609587 FAT4Q6V0I7 4981 aa0.38□□□□□ -2.35
SMCHD1-213ENST00000609587 LRP2P98164 4655 aa0.38□□□□□ -2.35
SMCHD1-213ENST00000609587 STAB2Q8WWQ8 2551 aa0.38□□□□□ -2.35
SMCHD1-213ENST00000609587 HERC1Q15751 4861 aa0.37□□□□□ -2.35
SMCHD1-213ENST00000609587 FSIP2Q5CZC0 6907 aa0.37□□□□□ -2.35
SMCHD1-213ENST00000609587 KMT2DO14686 5537 aa0.36□□□□□ -2.35
SMCHD1-213ENST00000609587 APELAP0DMC3 54 aa0.36□□□□□ -2.35
SMCHD1-213ENST00000609587 VPS13CQ709C8 3753 aa0.36□□□□□ -2.35
SMCHD1-213ENST00000609587 LAMA2P24043 3122 aaKnown RBP0.35□□□□□ -2.35
SMCHD1-213ENST00000609587 A0A096LNI7 61 aa0.35□□□□□ -2.35
SMCHD1-213ENST00000609587 CEP350Q5VT06 3117 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms