RNA–Protein interactions for RNA: ENST00000589677.5

SMARCA4-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,181 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-214ENST00000589677 KRTAP23-1A1A580 65 aa6.61□□□□□ -1.35
SMARCA4-214ENST00000589677 PRKDCP78527 4128 aaKnown RBP6.61□□□□□ -1.35
SMARCA4-214ENST00000589677 STARD9Q9P2P6 4700 aa6.6□□□□□ -1.35
SMARCA4-214ENST00000589677 DNAH1Q9P2D7 4330 aa6.58□□□□□ -1.36
SMARCA4-214ENST00000589677 LYSTQ99698 3801 aa6.57□□□□□ -1.36
SMARCA4-214ENST00000589677 DNHD1Q96M86 4753 aa6.56□□□□□ -1.36
SMARCA4-214ENST00000589677 VPS13DQ5THJ4 4388 aa6.56□□□□□ -1.36
SMARCA4-214ENST00000589677 MT1HL1P0DM35 61 aa6.53□□□□□ -1.36
SMARCA4-214ENST00000589677 KRTAP10-4P60372 401 aaPredicted RBP6.49□□□□□ -1.37
SMARCA4-214ENST00000589677 DNAH7Q8WXX0 4024 aa6.47□□□□□ -1.37
SMARCA4-214ENST00000589677 KMT2AQ03164 3969 aa6.45□□□□□ -1.38
SMARCA4-214ENST00000589677 DNAH17Q9UFH2 4485 aa6.43□□□□□ -1.38
SMARCA4-214ENST00000589677 DNAH11Q96DT5 4516 aa6.43□□□□□ -1.38
SMARCA4-214ENST00000589677 DYNC2H1Q8NCM8 4307 aaKnown RBP6.43□□□□□ -1.38
SMARCA4-214ENST00000589677 KRTAP4-5Q9BYR2 181 aa6.4□□□□□ -1.38
SMARCA4-214ENST00000589677 ALMS1Q8TCU4 4167 aa6.37□□□□□ -1.39
SMARCA4-214ENST00000589677 KRTAP10-12P60413 245 aa6.36□□□□□ -1.39
SMARCA4-214ENST00000589677 DNAH2Q9P225 4427 aa6.34□□□□□ -1.39
SMARCA4-214ENST00000589677 DNAH8Q96JB1 4490 aa6.32□□□□□ -1.4
SMARCA4-214ENST00000589677 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
SMARCA4-214ENST00000589677 HECTD4Q9Y4D8 3996 aa6.28□□□□□ -1.4
SMARCA4-214ENST00000589677 LRP1BQ9NZR2 4599 aa6.27□□□□□ -1.41
SMARCA4-214ENST00000589677 DNAH5Q8TE73 4624 aa6.26□□□□□ -1.41
SMARCA4-214ENST00000589677 LCE3AQ5TA76 89 aa6.25□□□□□ -1.41
SMARCA4-214ENST00000589677 FRAS1Q86XX4 4008 aa6.23□□□□□ -1.41
SMARCA4-214ENST00000589677 DNAH6Q9C0G6 4158 aa6.23□□□□□ -1.41
SMARCA4-214ENST00000589677 LORP23490 312 aaPredicted RBP6.2□□□□□ -1.42
SMARCA4-214ENST00000589677 DYNC1H1Q14204 4646 aaKnown RBP6.16□□□□□ -1.42
SMARCA4-214ENST00000589677 HYDINQ4G0P3 5121 aa6.16□□□□□ -1.42
SMARCA4-214ENST00000589677 FAT1Q14517 4588 aa6.15□□□□□ -1.42
SMARCA4-214ENST00000589677 VPS13BQ7Z7G8 4022 aa6.12□□□□□ -1.43
SMARCA4-214ENST00000589677 SACSQ9NZJ4 4579 aa6.07□□□□□ -1.44
SMARCA4-214ENST00000589677 FAT2Q9NYQ8 4349 aa6.03□□□□□ -1.44
SMARCA4-214ENST00000589677 PKHD1P08F94 4074 aa6.03□□□□□ -1.44
SMARCA4-214ENST00000589677 PKD1P98161 4303 aa5.99□□□□□ -1.45
SMARCA4-214ENST00000589677 CRCT1Q9UGL9 99 aa5.95□□□□□ -1.46
SMARCA4-214ENST00000589677 RYR2Q92736 4967 aa5.91□□□□□ -1.46
SMARCA4-214ENST00000589677 APOBP04114 4563 aaKnown RBP5.91□□□□□ -1.46
SMARCA4-214ENST00000589677 KMT2CQ8NEZ4 4911 aaKnown RBP5.87□□□□□ -1.47
SMARCA4-214ENST00000589677 KIAA1109Q2LD37 5005 aa5.86□□□□□ -1.47
SMARCA4-214ENST00000589677 LRP1Q07954 4544 aaKnown RBP5.85□□□□□ -1.47
SMARCA4-214ENST00000589677 KRTAP10-5P60370 271 aa5.81□□□□□ -1.48
SMARCA4-214ENST00000589677 RYR3Q15413 4870 aa5.81□□□□□ -1.48
SMARCA4-214ENST00000589677 MYCBP2O75592 4640 aa5.79□□□□□ -1.48
SMARCA4-214ENST00000589677 KRTAP17-1Q9BYP8 105 aa5.77□□□□□ -1.49
SMARCA4-214ENST00000589677 KRTAP4-1Q9BYQ7 146 aa5.76□□□□□ -1.49
SMARCA4-214ENST00000589677 RYR1P21817 5038 aa5.76□□□□□ -1.49
SMARCA4-214ENST00000589677 SPRR2GQ9BYE4 73 aa5.72□□□□□ -1.49
SMARCA4-214ENST00000589677 HSPG2P98160 4391 aa5.7□□□□□ -1.5
SMARCA4-214ENST00000589677 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
SMARCA4-214ENST00000589677 FAT3Q8TDW7 4589 aa5.66□□□□□ -1.5
SMARCA4-214ENST00000589677 MT1HP80294 61 aa5.63□□□□□ -1.51
SMARCA4-214ENST00000589677 PKHD1L1Q86WI1 4243 aa5.6□□□□□ -1.51
SMARCA4-214ENST00000589677 LCE3CQ5T5A8 94 aa5.59□□□□□ -1.51
SMARCA4-214ENST00000589677 SPRR5A0A1B0GTR4 108 aa5.55□□□□□ -1.52
SMARCA4-214ENST00000589677 KRTAP19-4Q3LI73 84 aa5.55□□□□□ -1.52
SMARCA4-214ENST00000589677 MT2AP02795 61 aa5.55□□□□□ -1.52
SMARCA4-214ENST00000589677 TNXBP22105 4242 aa5.53□□□□□ -1.52
SMARCA4-214ENST00000589677 LRP2P98164 4655 aa5.51□□□□□ -1.53
SMARCA4-214ENST00000589677 BIRC6Q9NR09 4857 aa5.5□□□□□ -1.53
SMARCA4-214ENST00000589677 EPPK1P58107 5090 aaKnown RBP5.5□□□□□ -1.53
SMARCA4-214ENST00000589677 KRTAP19-5Q3LI72 72 aa5.5□□□□□ -1.53
SMARCA4-214ENST00000589677 HERC2O95714 4834 aa5.43□□□□□ -1.54
SMARCA4-214ENST00000589677 MT1FP04733 61 aa5.43□□□□□ -1.54
SMARCA4-214ENST00000589677 LPAP08519 4548 aa5.37□□□□□ -1.55
SMARCA4-214ENST00000589677 ABCA13Q86UQ4 5058 aa5.31□□□□□ -1.56
SMARCA4-214ENST00000589677 KRTAP19-8Q3LI54 63 aa5.27□□□□□ -1.57
SMARCA4-214ENST00000589677 KRTAP19-1Q8IUB9 90 aa5.26□□□□□ -1.57
SMARCA4-214ENST00000589677 KRTAP10-7P60409 375 aaPredicted RBP5.23□□□□□ -1.57
SMARCA4-214ENST00000589677 KRTAP12-4P60329 112 aa5.18□□□□□ -1.58
SMARCA4-214ENST00000589677 MT1XP80297 61 aa5.15□□□□□ -1.59
SMARCA4-214ENST00000589677 HERC1Q15751 4861 aa5.12□□□□□ -1.59
SMARCA4-214ENST00000589677 SPRR2FQ96RM1 72 aa5.12□□□□□ -1.59
SMARCA4-214ENST00000589677 PCLOQ9Y6V0 5065 aa5.09□□□□□ -1.59
SMARCA4-214ENST00000589677 KRTAP19-2Q3LHN2 52 aa5.07□□□□□ -1.6
SMARCA4-214ENST00000589677 LCE2CQ5TA81 110 aa5.05□□□□□ -1.6
SMARCA4-214ENST00000589677 KRTAP9-8Q9BYQ0 159 aa5.05□□□□□ -1.6
SMARCA4-214ENST00000589677 MT1BP07438 61 aa5.03□□□□□ -1.6
SMARCA4-214ENST00000589677 MUC2Q02817 5179 aa5□□□□□ -1.61
SMARCA4-214ENST00000589677 MUC17Q685J3 4493 aa4.99□□□□□ -1.61
SMARCA4-214ENST00000589677 LCE3BQ5TA77 95 aa4.98□□□□□ -1.61
SMARCA4-214ENST00000589677 FLGP20930 4061 aaPredicted RBP4.94□□□□□ -1.62
SMARCA4-214ENST00000589677 KRTAP9-3Q9BYQ3 159 aa4.93□□□□□ -1.62
SMARCA4-214ENST00000589677 MT1GP13640 62 aa4.92□□□□□ -1.62
SMARCA4-214ENST00000589677 KRTAP9-2Q9BYQ4 174 aa4.92□□□□□ -1.62
SMARCA4-214ENST00000589677 HMCN2Q8NDA2 5059 aa4.91□□□□□ -1.62
SMARCA4-214ENST00000589677 SPRR2EP22531 72 aa4.91□□□□□ -1.62
SMARCA4-214ENST00000589677 SPRR2BP35325 72 aa4.91□□□□□ -1.62
SMARCA4-214ENST00000589677 SPRR2AP35326 72 aa4.91□□□□□ -1.62
SMARCA4-214ENST00000589677 LCE3DQ9BYE3 92 aa4.88□□□□□ -1.63
SMARCA4-214ENST00000589677 LCE3EQ5T5B0 92 aa4.85□□□□□ -1.63
SMARCA4-214ENST00000589677 RNF213Q63HN8 5207 aa4.84□□□□□ -1.63
SMARCA4-214ENST00000589677 FAT4Q6V0I7 4981 aa4.83□□□□□ -1.64
SMARCA4-214ENST00000589677 KRTAP4-8A0A0G2JLE6 195 aa4.8□□□□□ -1.64
SMARCA4-214ENST00000589677 KRTAP4-8Q9BYQ9 185 aa4.8□□□□□ -1.64
SMARCA4-214ENST00000589677 UBR4Q5T4S7 5183 aa4.8□□□□□ -1.64
SMARCA4-214ENST00000589677 KRTAP9-6A0A140TA67 174 aa4.79□□□□□ -1.64
SMARCA4-214ENST00000589677 SPRR2DP22532 72 aa4.76□□□□□ -1.65
SMARCA4-214ENST00000589677 MT1LQ93083 61 aa4.73□□□□□ -1.65
SMARCA4-214ENST00000589677 LCE2DQ5TA82 110 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms