RNA–Protein interactions for RNA: ENST00000581487.1

CMTM4-205, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

Gene CMTM4, Length 7,026 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-205ENST00000581487 KRTAP10-12P60413 245 aa3.43□□□□□ -1.86
CMTM4-205ENST00000581487 VPS13DQ5THJ4 4388 aa3.39□□□□□ -1.87
CMTM4-205ENST00000581487 PCLOQ9Y6V0 5065 aa3.38□□□□□ -1.87
CMTM4-205ENST00000581487 KRTAP10-4P60372 401 aaPredicted RBP3.37□□□□□ -1.87
CMTM4-205ENST00000581487 KMT2AQ03164 3969 aa3.37□□□□□ -1.87
CMTM4-205ENST00000581487 LORP23490 312 aaPredicted RBP3.36□□□□□ -1.87
CMTM4-205ENST00000581487 COL7A1Q02388 2944 aa3.36□□□□□ -1.87
CMTM4-205ENST00000581487 FBN3Q75N90 2809 aa3.36□□□□□ -1.87
CMTM4-205ENST00000581487 MEGF8Q7Z7M0 2845 aa3.35□□□□□ -1.87
CMTM4-205ENST00000581487 KRTAP4-5Q9BYR2 181 aa3.34□□□□□ -1.87
CMTM4-205ENST00000581487 MT1HL1P0DM35 61 aa3.34□□□□□ -1.88
CMTM4-205ENST00000581487 HUWE1Q7Z6Z7 4374 aaKnown RBP3.31□□□□□ -1.88
CMTM4-205ENST00000581487 KRTAP8-1Q8IUC2 63 aa3.3□□□□□ -1.88
CMTM4-205ENST00000581487 DNAH5Q8TE73 4624 aa3.27□□□□□ -1.89
CMTM4-205ENST00000581487 KRTAP12-3P60328 96 aa3.25□□□□□ -1.89
CMTM4-205ENST00000581487 PLECQ15149 4684 aaKnown RBP3.21□□□□□ -1.89
CMTM4-205ENST00000581487 DNAH7Q8WXX0 4024 aa3.2□□□□□ -1.9
CMTM4-205ENST00000581487 DNAH11Q96DT5 4516 aa3.19□□□□□ -1.9
CMTM4-205ENST00000581487 DYNC1H1Q14204 4646 aaKnown RBP3.17□□□□□ -1.9
CMTM4-205ENST00000581487 LCE3AQ5TA76 89 aa3.17□□□□□ -1.9
CMTM4-205ENST00000581487 DNAH9Q9NYC9 4486 aa3.17□□□□□ -1.9
CMTM4-205ENST00000581487 DNAH10Q8IVF4 4471 aa3.16□□□□□ -1.9
CMTM4-205ENST00000581487 DNAH17Q9UFH2 4485 aa3.15□□□□□ -1.9
CMTM4-205ENST00000581487 DNHD1Q96M86 4753 aa3.15□□□□□ -1.91
CMTM4-205ENST00000581487 HECTD4Q9Y4D8 3996 aa3.14□□□□□ -1.91
CMTM4-205ENST00000581487 LCE2DQ5TA82 110 aaPredicted RBP3.14□□□□□ -1.91
CMTM4-205ENST00000581487 DNAH6Q9C0G6 4158 aa3.14□□□□□ -1.91
CMTM4-205ENST00000581487 SACSQ9NZJ4 4579 aa3.12□□□□□ -1.91
CMTM4-205ENST00000581487 DNAH3Q8TD57 4116 aa3.12□□□□□ -1.91
CMTM4-205ENST00000581487 RYR1P21817 5038 aa3.12□□□□□ -1.91
CMTM4-205ENST00000581487 DNAH2Q9P225 4427 aa3.11□□□□□ -1.91
CMTM4-205ENST00000581487 DNAH1Q9P2D7 4330 aa3.11□□□□□ -1.91
CMTM4-205ENST00000581487 KRTAP19-4Q3LI73 84 aa3.11□□□□□ -1.91
CMTM4-205ENST00000581487 LRP1BQ9NZR2 4599 aa3.1□□□□□ -1.91
CMTM4-205ENST00000581487 PRKDCP78527 4128 aaKnown RBP3.09□□□□□ -1.91
CMTM4-205ENST00000581487 DNAH8Q96JB1 4490 aa3.06□□□□□ -1.92
CMTM4-205ENST00000581487 FAT1Q14517 4588 aa3.05□□□□□ -1.92
CMTM4-205ENST00000581487 PKHD1P08F94 4074 aa3.04□□□□□ -1.92
CMTM4-205ENST00000581487 KRTAP4-1Q9BYQ7 146 aa3.02□□□□□ -1.93
CMTM4-205ENST00000581487 KIAA1109Q2LD37 5005 aa3.02□□□□□ -1.93
CMTM4-205ENST00000581487 HYDINQ4G0P3 5121 aa3.02□□□□□ -1.93
CMTM4-205ENST00000581487 SPRR2FQ96RM1 72 aa3.01□□□□□ -1.93
CMTM4-205ENST00000581487 STARD9Q9P2P6 4700 aa3.01□□□□□ -1.93
CMTM4-205ENST00000581487 APOBP04114 4563 aaKnown RBP3□□□□□ -1.93
CMTM4-205ENST00000581487 RYR2Q92736 4967 aa2.97□□□□□ -1.93
CMTM4-205ENST00000581487 RYR3Q15413 4870 aa2.96□□□□□ -1.94
CMTM4-205ENST00000581487 SPRR2EP22531 72 aa2.95□□□□□ -1.94
CMTM4-205ENST00000581487 SPRR2BP35325 72 aa2.95□□□□□ -1.94
CMTM4-205ENST00000581487 SPRR2AP35326 72 aa2.95□□□□□ -1.94
CMTM4-205ENST00000581487 SPRR5A0A1B0GTR4 108 aa2.93□□□□□ -1.94
CMTM4-205ENST00000581487 HERC1Q15751 4861 aa2.91□□□□□ -1.94
CMTM4-205ENST00000581487 LCE2BO14633 110 aa2.9□□□□□ -1.94
CMTM4-205ENST00000581487 MT3P25713 68 aa2.9□□□□□ -1.95
CMTM4-205ENST00000581487 LCE2CQ5TA81 110 aa2.89□□□□□ -1.95
CMTM4-205ENST00000581487 SPRR2GQ9BYE4 73 aa2.88□□□□□ -1.95
CMTM4-205ENST00000581487 LCE3CQ5T5A8 94 aa2.87□□□□□ -1.95
CMTM4-205ENST00000581487 MT2AP02795 61 aa2.87□□□□□ -1.95
CMTM4-205ENST00000581487 SPRR2DP22532 72 aa2.87□□□□□ -1.95
CMTM4-205ENST00000581487 VPS13BQ7Z7G8 4022 aa2.87□□□□□ -1.95
CMTM4-205ENST00000581487 DYNC2H1Q8NCM8 4307 aaKnown RBP2.87□□□□□ -1.95
CMTM4-205ENST00000581487 MT1HP80294 61 aa2.86□□□□□ -1.95
CMTM4-205ENST00000581487 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
CMTM4-205ENST00000581487 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
CMTM4-205ENST00000581487 LCE3BQ5TA77 95 aa2.85□□□□□ -1.95
CMTM4-205ENST00000581487 MYCBP2O75592 4640 aa2.85□□□□□ -1.95
CMTM4-205ENST00000581487 BIRC6Q9NR09 4857 aa2.85□□□□□ -1.95
CMTM4-205ENST00000581487 FAT2Q9NYQ8 4349 aa2.83□□□□□ -1.96
CMTM4-205ENST00000581487 MT1FP04733 61 aa2.83□□□□□ -1.96
CMTM4-205ENST00000581487 KRTAP17-1Q9BYP8 105 aa2.82□□□□□ -1.96
CMTM4-205ENST00000581487 LCE3EQ5T5B0 92 aa2.79□□□□□ -1.96
CMTM4-205ENST00000581487 HERC2O95714 4834 aa2.79□□□□□ -1.96
CMTM4-205ENST00000581487 KMT2CQ8NEZ4 4911 aaKnown RBP2.78□□□□□ -1.96
CMTM4-205ENST00000581487 KRTAP19-1Q8IUB9 90 aa2.75□□□□□ -1.97
CMTM4-205ENST00000581487 KRTAP19-5Q3LI72 72 aa2.74□□□□□ -1.97
CMTM4-205ENST00000581487 LRP1Q07954 4544 aaKnown RBP2.74□□□□□ -1.97
CMTM4-205ENST00000581487 ABCA13Q86UQ4 5058 aa2.73□□□□□ -1.97
CMTM4-205ENST00000581487 LCE3DQ9BYE3 92 aa2.72□□□□□ -1.97
CMTM4-205ENST00000581487 HSPG2P98160 4391 aa2.72□□□□□ -1.97
CMTM4-205ENST00000581487 KRTAP19-8Q3LI54 63 aa2.7□□□□□ -1.98
CMTM4-205ENST00000581487 EPPK1P58107 5090 aaKnown RBP2.69□□□□□ -1.98
CMTM4-205ENST00000581487 MT1XP80297 61 aa2.66□□□□□ -1.98
CMTM4-205ENST00000581487 MT1BP07438 61 aa2.64□□□□□ -1.99
CMTM4-205ENST00000581487 LRP2P98164 4655 aa2.64□□□□□ -1.99
CMTM4-205ENST00000581487 HMCN2Q8NDA2 5059 aa2.63□□□□□ -1.99
CMTM4-205ENST00000581487 LPAP08519 4548 aa2.63□□□□□ -1.99
CMTM4-205ENST00000581487 UBR4Q5T4S7 5183 aa2.62□□□□□ -1.99
CMTM4-205ENST00000581487 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
CMTM4-205ENST00000581487 FLGP20930 4061 aaPredicted RBP2.61□□□□□ -1.99
CMTM4-205ENST00000581487 FAT4Q6V0I7 4981 aa2.61□□□□□ -1.99
CMTM4-205ENST00000581487 LCE2AQ5TA79 106 aaPredicted RBP2.61□□□□□ -1.99
CMTM4-205ENST00000581487 PKHD1L1Q86WI1 4243 aa2.6□□□□□ -1.99
CMTM4-205ENST00000581487 KRTAP9-8Q9BYQ0 159 aa2.59□□□□□ -2
CMTM4-205ENST00000581487 MT1GP13640 62 aa2.58□□□□□ -2
CMTM4-205ENST00000581487 RNF213Q63HN8 5207 aa2.58□□□□□ -2
CMTM4-205ENST00000581487 SSPOA2VEC9 5147 aa2.58□□□□□ -2
CMTM4-205ENST00000581487 KRTAP19-2Q3LHN2 52 aa2.58□□□□□ -2
CMTM4-205ENST00000581487 MUC17Q685J3 4493 aa2.57□□□□□ -2
CMTM4-205ENST00000581487 MT4P47944 62 aa2.56□□□□□ -2
CMTM4-205ENST00000581487 PKD1P98161 4303 aa2.55□□□□□ -2
CMTM4-205ENST00000581487 GPR98Q8WXG9 6306 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms