RNA–Protein interactions for RNA: ENST00000581487.1

CMTM4-205, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

Gene CMTM4, Length 7,026 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-205ENST00000581487 NISCHQ9Y2I1 1504 aa12.34□□□□□ -0.43
CMTM4-205ENST00000581487 DCAF8L2P0C7V8 631 aa12.28□□□□□ -0.44
CMTM4-205ENST00000581487 PELP1Q8IZL8 1130 aaKnown RBP12.26□□□□□ -0.45
CMTM4-205ENST00000581487 MYT1Q01538 1121 aa12.07□□□□□ -0.48
CMTM4-205ENST00000581487 SUPT5HO00267 1087 aaKnown RBP12.05□□□□□ -0.48
CMTM4-205ENST00000581487 SHROOM4Q9ULL8 1493 aa11.84□□□□□ -0.51
CMTM4-205ENST00000581487 ERICH6Q7L0X2 663 aa11.84□□□□□ -0.51
CMTM4-205ENST00000581487 CCER1Q8TC90 406 aaPredicted RBP11.58□□□□□ -0.56
CMTM4-205ENST00000581487 PCGF6Q9BYE7 350 aa11.51□□□□□ -0.57
CMTM4-205ENST00000581487 EHMT2Q96KQ7 1210 aa11.47□□□□□ -0.57
CMTM4-205ENST00000581487 CENPBP07199 599 aaPredicted RBP11.45□□□□□ -0.58
CMTM4-205ENST00000581487 TTBK1Q5TCY1 1321 aaPredicted RBP11.36□□□□□ -0.59
CMTM4-205ENST00000581487 FAM9AQ8IZU1 332 aaPredicted RBP11.31□□□□□ -0.6
CMTM4-205ENST00000581487 YTHDC1Q96MU7 727 aaKnown RBP11.27□□□□□ -0.6
CMTM4-205ENST00000581487 ZEB1P37275 1124 aaPredicted RBP11.25□□□□□ -0.61
CMTM4-205ENST00000581487 HRCP23327 699 aa11.21□□□□□ -0.62
CMTM4-205ENST00000581487 DAXXQ9UER7 740 aaPredicted RBP11.16□□□□□ -0.62
CMTM4-205ENST00000581487 TRIM41Q8WV44 630 aa11.14□□□□□ -0.63
CMTM4-205ENST00000581487 APLP2Q06481 763 aa11.14□□□□□ -0.63
CMTM4-205ENST00000581487 CHIC1Q5VXU3 224 aa11.06□□□□□ -0.64
CMTM4-205ENST00000581487 TRIM26Q12899 539 aaPredicted RBP11.05□□□□□ -0.64
CMTM4-205ENST00000581487 NEFLP07196 543 aa11.04□□□□□ -0.64
CMTM4-205ENST00000581487 PPARGC1BQ86YN6 1023 aaKnown RBP10.97□□□□□ -0.65
CMTM4-205ENST00000581487 LOC105371045A0A1W2PR82 267 aa10.95□□□□□ -0.66
CMTM4-205ENST00000581487 RANGAP1P46060 587 aaPredicted RBP10.88□□□□□ -0.67
CMTM4-205ENST00000581487 UBTFP17480 764 aaKnown RBP10.87□□□□□ -0.67
CMTM4-205ENST00000581487 RTL5Q5HYW3 569 aaPredicted RBP10.82□□□□□ -0.68
CMTM4-205ENST00000581487 ZNF316A6NFI3 1004 aaPredicted RBP10.77□□□□□ -0.69
CMTM4-205ENST00000581487 GTF3C3Q9Y5Q9 886 aa10.7□□□□□ -0.7
CMTM4-205ENST00000581487 EIF5BO60841 1220 aaKnown RBP10.69□□□□□ -0.7
CMTM4-205ENST00000581487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.69□□□□□ -0.7
CMTM4-205ENST00000581487 MYT1LQ9UL68 1186 aa10.68□□□□□ -0.7
CMTM4-205ENST00000581487 DIEXFQ68CQ4 756 aaKnown RBP10.65□□□□□ -0.71
CMTM4-205ENST00000581487 ATP1B4Q9UN42 357 aaPredicted RBP10.64□□□□□ -0.71
CMTM4-205ENST00000581487 CLSPNQ9HAW4 1339 aa10.63□□□□□ -0.71
CMTM4-205ENST00000581487 HNRNPUL2Q1KMD3 747 aaKnown RBP10.63□□□□□ -0.71
CMTM4-205ENST00000581487 SLC4A1APQ9BWU0 796 aaKnown RBP10.63□□□□□ -0.71
CMTM4-205ENST00000581487 CDK11BP21127 795 aaKnown RBP10.6□□□□□ -0.71
CMTM4-205ENST00000581487 CDK11AQ9UQ88 783 aaPredicted RBP10.6□□□□□ -0.71
CMTM4-205ENST00000581487 GLIPR1L2Q4G1C9 344 aa10.6□□□□□ -0.71
CMTM4-205ENST00000581487 BCANQ96GW7 911 aa10.52□□□□□ -0.72
CMTM4-205ENST00000581487 ITGAEP38570 1179 aa10.52□□□□□ -0.72
CMTM4-205ENST00000581487 ZBTB47Q9UFB7 747 aaPredicted RBP10.52□□□□□ -0.72
CMTM4-205ENST00000581487 SLC24A1O60721 1099 aa10.51□□□□□ -0.73
CMTM4-205ENST00000581487 POLR3GLQ9BT43 218 aa10.5□□□□□ -0.73
CMTM4-205ENST00000581487 ACIN1Q9UKV3 1341 aaKnown RBP10.49□□□□□ -0.73
CMTM4-205ENST00000581487 DCAF1Q9Y4B6 1507 aa10.44□□□□□ -0.74
CMTM4-205ENST00000581487 NCBP3Q53F19 620 aaKnown RBP10.42□□□□□ -0.74
CMTM4-205ENST00000581487 BCL11AQ9H165 835 aa10.39□□□□□ -0.75
CMTM4-205ENST00000581487 ABCC9O60706 1549 aa10.34□□□□□ -0.75
CMTM4-205ENST00000581487 CNGB1Q14028 1251 aaPredicted RBP10.33□□□□□ -0.76
CMTM4-205ENST00000581487 ZCCHC6Q5VYS8 1495 aaKnown RBP10.32□□□□□ -0.76
CMTM4-205ENST00000581487 SCAF1Q9H7N4 1312 aaKnown RBP10.31□□□□□ -0.76
CMTM4-205ENST00000581487 NEUROD1Q13562 356 aa10.3□□□□□ -0.76
CMTM4-205ENST00000581487 MYO15BQ96JP2 1530 aa10.3□□□□□ -0.76
CMTM4-205ENST00000581487 CSRNP3Q8WYN3 585 aa10.29□□□□□ -0.76
CMTM4-205ENST00000581487 NBR1Q14596 966 aa10.29□□□□□ -0.76
CMTM4-205ENST00000581487 KRI1Q8N9T8 703 aaKnown RBP10.28□□□□□ -0.76
CMTM4-205ENST00000581487 TULP1O00294 542 aaPredicted RBP10.28□□□□□ -0.76
CMTM4-205ENST00000581487 ANP32BQ92688 251 aaKnown RBP10.27□□□□□ -0.77
CMTM4-205ENST00000581487 ANP32AP39687 249 aaKnown RBP10.27□□□□□ -0.77
CMTM4-205ENST00000581487 FAM50AQ14320 339 aaKnown RBP10.26□□□□□ -0.77
CMTM4-205ENST00000581487 PRM3Q9NNZ6 103 aa10.24□□□□□ -0.77
CMTM4-205ENST00000581487 NEFMP07197 916 aa10.23□□□□□ -0.77
CMTM4-205ENST00000581487 ANP32EQ9BTT0 268 aa10.23□□□□□ -0.77
CMTM4-205ENST00000581487 ANP32CO43423 234 aa10.21□□□□□ -0.77
CMTM4-205ENST00000581487 NPM2Q86SE8 214 aaKnown RBP10.21□□□□□ -0.78
CMTM4-205ENST00000581487 PABPN1Q86U42 306 aaKnown RBP eCLIP10.19□□□□□ -0.78
CMTM4-205ENST00000581487 TRIM52Q96A61 297 aa10.15□□□□□ -0.78
CMTM4-205ENST00000581487 RTN4Q9NQC3 1192 aaKnown RBP10.14□□□□□ -0.79
CMTM4-205ENST00000581487 FKBP8Q14318 412 aa10.11□□□□□ -0.79
CMTM4-205ENST00000581487 MIER1Q8N108 512 aa10.11□□□□□ -0.79
CMTM4-205ENST00000581487 CANXP27824 592 aaKnown RBP10.09□□□□□ -0.79
CMTM4-205ENST00000581487 ARXQ96QS3 562 aa10.09□□□□□ -0.79
CMTM4-205ENST00000581487 TNNT2P45379 298 aaPredicted RBP10.07□□□□□ -0.8
CMTM4-205ENST00000581487 CCDC180Q9P1Z9 1646 aa10.07□□□□□ -0.8
CMTM4-205ENST00000581487 PRKCSHP14314 528 aaPredicted RBP10.05□□□□□ -0.8
CMTM4-205ENST00000581487 RSF1Q96T23 1441 aaPredicted RBP10.04□□□□□ -0.8
CMTM4-205ENST00000581487 TRIM44Q96DX7 344 aaPredicted RBP10.04□□□□□ -0.8
CMTM4-205ENST00000581487 HSP90AA1P07900 732 aaKnown RBP10.03□□□□□ -0.8
CMTM4-205ENST00000581487 ZNF326Q5BKZ1 582 aaKnown RBP10.03□□□□□ -0.8
CMTM4-205ENST00000581487 AMER1Q5JTC6 1135 aaPredicted RBP10.03□□□□□ -0.8
CMTM4-205ENST00000581487 DDX10Q13206 875 aaKnown RBP10.03□□□□□ -0.8
CMTM4-205ENST00000581487 A0A0G2JS52 829 aa10.02□□□□□ -0.81
CMTM4-205ENST00000581487 P3H3Q8IVL6 736 aa10.02□□□□□ -0.81
CMTM4-205ENST00000581487 CLSTN1O94985 981 aa10.01□□□□□ -0.81
CMTM4-205ENST00000581487 SCRIBQ14160 1630 aa10□□□□□ -0.81
CMTM4-205ENST00000581487 ZBTB4Q9P1Z0 1013 aaPredicted RBP10□□□□□ -0.81
CMTM4-205ENST00000581487 NAP1L5Q96NT1 182 aaPredicted RBP10□□□□□ -0.81
CMTM4-205ENST00000581487 FBLN2P98095 1184 aa9.98□□□□□ -0.81
CMTM4-205ENST00000581487 HNRNPUQ00839 825 aaKnown RBP eCLIP9.98□□□□□ -0.81
CMTM4-205ENST00000581487 CEP162Q5TB80 1403 aa9.97□□□□□ -0.81
CMTM4-205ENST00000581487 TONSLQ96HA7 1378 aa9.97□□□□□ -0.81
CMTM4-205ENST00000581487 CLIP1P30622 1438 aa9.96□□□□□ -0.81
CMTM4-205ENST00000581487 CALRP27797 417 aaKnown RBP9.94□□□□□ -0.82
CMTM4-205ENST00000581487 DEKP35659 375 aaKnown RBP9.92□□□□□ -0.82
CMTM4-205ENST00000581487 TNIKQ9UKE5 1360 aa9.92□□□□□ -0.82
CMTM4-205ENST00000581487 EEA1Q15075 1411 aa9.91□□□□□ -0.82
CMTM4-205ENST00000581487 PLPPR3Q6T4P5 718 aa9.9□□□□□ -0.82
CMTM4-205ENST00000581487 ARID3CA6NKF2 412 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms