RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 MT1HL1P0DM35 61 aa4.91□□□□□ -1.62
ACTN1-216ENST00000556083 DNAH1Q9P2D7 4330 aa4.85□□□□□ -1.63
ACTN1-216ENST00000556083 KRTAP10-12P60413 245 aa4.83□□□□□ -1.64
ACTN1-216ENST00000556083 HECTD4Q9Y4D8 3996 aa4.78□□□□□ -1.64
ACTN1-216ENST00000556083 KRTAP3-2Q9BYR7 98 aa4.78□□□□□ -1.64
ACTN1-216ENST00000556083 KRTAP10-4P60372 401 aaPredicted RBP4.75□□□□□ -1.65
ACTN1-216ENST00000556083 KRTAP3-3Q9BYR6 98 aa4.74□□□□□ -1.65
ACTN1-216ENST00000556083 TNXBP22105 4242 aa4.74□□□□□ -1.65
ACTN1-216ENST00000556083 PRKDCP78527 4128 aaKnown RBP4.72□□□□□ -1.65
ACTN1-216ENST00000556083 FRAS1Q86XX4 4008 aa4.7□□□□□ -1.66
ACTN1-216ENST00000556083 KRTAP12-3P60328 96 aa4.69□□□□□ -1.66
ACTN1-216ENST00000556083 KRTAP4-5Q9BYR2 181 aa4.68□□□□□ -1.66
ACTN1-216ENST00000556083 KMT2AQ03164 3969 aa4.66□□□□□ -1.66
ACTN1-216ENST00000556083 HUWE1Q7Z6Z7 4374 aaKnown RBP4.63□□□□□ -1.67
ACTN1-216ENST00000556083 KRTAP19-4Q3LI73 84 aa4.62□□□□□ -1.67
ACTN1-216ENST00000556083 DNAH9Q9NYC9 4486 aa4.6□□□□□ -1.67
ACTN1-216ENST00000556083 VPS13DQ5THJ4 4388 aa4.55□□□□□ -1.68
ACTN1-216ENST00000556083 DYNC2H1Q8NCM8 4307 aaKnown RBP4.49□□□□□ -1.69
ACTN1-216ENST00000556083 VPS13BQ7Z7G8 4022 aa4.49□□□□□ -1.69
ACTN1-216ENST00000556083 LCE3AQ5TA76 89 aa4.48□□□□□ -1.69
ACTN1-216ENST00000556083 ALMS1Q8TCU4 4167 aa4.48□□□□□ -1.69
ACTN1-216ENST00000556083 FAT2Q9NYQ8 4349 aa4.46□□□□□ -1.7
ACTN1-216ENST00000556083 KRTAP8-1Q8IUC2 63 aa4.46□□□□□ -1.7
ACTN1-216ENST00000556083 LCE2DQ5TA82 110 aaPredicted RBP4.45□□□□□ -1.7
ACTN1-216ENST00000556083 PKHD1P08F94 4074 aa4.44□□□□□ -1.7
ACTN1-216ENST00000556083 PLECQ15149 4684 aaKnown RBP4.42□□□□□ -1.7
ACTN1-216ENST00000556083 DNAH5Q8TE73 4624 aa4.4□□□□□ -1.7
ACTN1-216ENST00000556083 CRCT1Q9UGL9 99 aa4.39□□□□□ -1.71
ACTN1-216ENST00000556083 KIAA1109Q2LD37 5005 aa4.38□□□□□ -1.71
ACTN1-216ENST00000556083 STARD9Q9P2P6 4700 aa4.36□□□□□ -1.71
ACTN1-216ENST00000556083 SPRR2GQ9BYE4 73 aa4.36□□□□□ -1.71
ACTN1-216ENST00000556083 DNAH11Q96DT5 4516 aa4.36□□□□□ -1.71
ACTN1-216ENST00000556083 FAT3Q8TDW7 4589 aa4.35□□□□□ -1.71
ACTN1-216ENST00000556083 RYR3Q15413 4870 aa4.35□□□□□ -1.71
ACTN1-216ENST00000556083 MYCBP2O75592 4640 aa4.35□□□□□ -1.71
ACTN1-216ENST00000556083 BIRC6Q9NR09 4857 aa4.33□□□□□ -1.72
ACTN1-216ENST00000556083 RYR1P21817 5038 aa4.32□□□□□ -1.72
ACTN1-216ENST00000556083 KRTAP17-1Q9BYP8 105 aa4.3□□□□□ -1.72
ACTN1-216ENST00000556083 DYNC1H1Q14204 4646 aaKnown RBP4.28□□□□□ -1.72
ACTN1-216ENST00000556083 LORP23490 312 aaPredicted RBP4.28□□□□□ -1.72
ACTN1-216ENST00000556083 PKHD1L1Q86WI1 4243 aa4.28□□□□□ -1.72
ACTN1-216ENST00000556083 MT1HP80294 61 aa4.26□□□□□ -1.73
ACTN1-216ENST00000556083 RYR2Q92736 4967 aa4.26□□□□□ -1.73
ACTN1-216ENST00000556083 HYDINQ4G0P3 5121 aa4.25□□□□□ -1.73
ACTN1-216ENST00000556083 KMT2CQ8NEZ4 4911 aaKnown RBP4.25□□□□□ -1.73
ACTN1-216ENST00000556083 KRTAP10-5P60370 271 aa4.25□□□□□ -1.73
ACTN1-216ENST00000556083 FAT1Q14517 4588 aa4.23□□□□□ -1.73
ACTN1-216ENST00000556083 MT2AP02795 61 aa4.23□□□□□ -1.73
ACTN1-216ENST00000556083 LRP1BQ9NZR2 4599 aa4.23□□□□□ -1.73
ACTN1-216ENST00000556083 SACSQ9NZJ4 4579 aa4.22□□□□□ -1.73
ACTN1-216ENST00000556083 HERC2O95714 4834 aa4.21□□□□□ -1.74
ACTN1-216ENST00000556083 DNAH10Q8IVF4 4471 aa4.2□□□□□ -1.74
ACTN1-216ENST00000556083 DNAH2Q9P225 4427 aa4.19□□□□□ -1.74
ACTN1-216ENST00000556083 KRTAP10-7P60409 375 aaPredicted RBP4.19□□□□□ -1.74
ACTN1-216ENST00000556083 DNAH8Q96JB1 4490 aa4.15□□□□□ -1.74
ACTN1-216ENST00000556083 KRTAP4-1Q9BYQ7 146 aa4.12□□□□□ -1.75
ACTN1-216ENST00000556083 DNAH17Q9UFH2 4485 aa4.11□□□□□ -1.75
ACTN1-216ENST00000556083 EPPK1P58107 5090 aaKnown RBP4.1□□□□□ -1.75
ACTN1-216ENST00000556083 KRTAP19-8Q3LI54 63 aa4.08□□□□□ -1.76
ACTN1-216ENST00000556083 LCE3CQ5T5A8 94 aa4.08□□□□□ -1.76
ACTN1-216ENST00000556083 APOBP04114 4563 aaKnown RBP4.07□□□□□ -1.76
ACTN1-216ENST00000556083 PKD1P98161 4303 aa4.07□□□□□ -1.76
ACTN1-216ENST00000556083 MT1FP04733 61 aa4.06□□□□□ -1.76
ACTN1-216ENST00000556083 HSPG2P98160 4391 aa4.04□□□□□ -1.76
ACTN1-216ENST00000556083 SPRR2FQ96RM1 72 aa4.04□□□□□ -1.76
ACTN1-216ENST00000556083 KRTAP19-5Q3LI72 72 aa4.01□□□□□ -1.77
ACTN1-216ENST00000556083 PCLOQ9Y6V0 5065 aa3.97□□□□□ -1.77
ACTN1-216ENST00000556083 LRP1Q07954 4544 aaKnown RBP3.94□□□□□ -1.78
ACTN1-216ENST00000556083 ABCA13Q86UQ4 5058 aa3.94□□□□□ -1.78
ACTN1-216ENST00000556083 HERC1Q15751 4861 aa3.88□□□□□ -1.79
ACTN1-216ENST00000556083 KRTAP19-1Q8IUB9 90 aa3.87□□□□□ -1.79
ACTN1-216ENST00000556083 LRP2P98164 4655 aa3.86□□□□□ -1.79
ACTN1-216ENST00000556083 MT1GP13640 62 aa3.85□□□□□ -1.79
ACTN1-216ENST00000556083 KRTAP12-4P60329 112 aa3.83□□□□□ -1.8
ACTN1-216ENST00000556083 SPRR2EP22531 72 aa3.82□□□□□ -1.8
ACTN1-216ENST00000556083 SPRR2BP35325 72 aa3.82□□□□□ -1.8
ACTN1-216ENST00000556083 SPRR2AP35326 72 aa3.82□□□□□ -1.8
ACTN1-216ENST00000556083 MT1XP80297 61 aa3.77□□□□□ -1.81
ACTN1-216ENST00000556083 LCE2BO14633 110 aa3.77□□□□□ -1.81
ACTN1-216ENST00000556083 SPRR5A0A1B0GTR4 108 aa3.74□□□□□ -1.81
ACTN1-216ENST00000556083 MT1BP07438 61 aa3.74□□□□□ -1.81
ACTN1-216ENST00000556083 SPRR2DP22532 72 aa3.73□□□□□ -1.81
ACTN1-216ENST00000556083 UBR4Q5T4S7 5183 aa3.73□□□□□ -1.81
ACTN1-216ENST00000556083 KRTAP9-8Q9BYQ0 159 aa3.71□□□□□ -1.82
ACTN1-216ENST00000556083 KRTAP9-2Q9BYQ4 174 aa3.68□□□□□ -1.82
ACTN1-216ENST00000556083 FLGP20930 4061 aaPredicted RBP3.67□□□□□ -1.82
ACTN1-216ENST00000556083 KRTAP9-3Q9BYQ3 159 aa3.66□□□□□ -1.82
ACTN1-216ENST00000556083 RNF213Q63HN8 5207 aa3.66□□□□□ -1.82
ACTN1-216ENST00000556083 FSIP2Q5CZC0 6907 aa3.66□□□□□ -1.82
ACTN1-216ENST00000556083 MT1LQ93083 61 aa3.62□□□□□ -1.83
ACTN1-216ENST00000556083 LCE3DQ9BYE3 92 aa3.62□□□□□ -1.83
ACTN1-216ENST00000556083 LCE3EQ5T5B0 92 aa3.61□□□□□ -1.83
ACTN1-216ENST00000556083 LPAP08519 4548 aa3.6□□□□□ -1.83
ACTN1-216ENST00000556083 LCE3BQ5TA77 95 aa3.6□□□□□ -1.83
ACTN1-216ENST00000556083 KRTAP19-3Q7Z4W3 81 aa3.6□□□□□ -1.83
ACTN1-216ENST00000556083 LCE2CQ5TA81 110 aa3.58□□□□□ -1.84
ACTN1-216ENST00000556083 HMCN2Q8NDA2 5059 aa3.57□□□□□ -1.84
ACTN1-216ENST00000556083 KRTAP9-6A0A140TA67 174 aa3.57□□□□□ -1.84
ACTN1-216ENST00000556083 MT3P25713 68 aa3.55□□□□□ -1.84
ACTN1-216ENST00000556083 LOC100996750A0A140TA64 210 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms