RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 H3BNG1 76 aa1.31□□□□□ -2.2
VPS29-210ENST00000552130 CSMD1Q96PZ7 3565 aa1.31□□□□□ -2.2
VPS29-210ENST00000552130 DOPEY1Q5JWR5 2465 aa1.31□□□□□ -2.2
VPS29-210ENST00000552130 CSMD2Q7Z408 3487 aa1.3□□□□□ -2.2
VPS29-210ENST00000552130 VPS13BQ7Z7G8 4022 aa1.3□□□□□ -2.2
VPS29-210ENST00000552130 FLNBO75369 2602 aaKnown RBP1.3□□□□□ -2.2
VPS29-210ENST00000552130 MGAQ8IWI9 3026 aa1.3□□□□□ -2.2
VPS29-210ENST00000552130 SPENQ96T58 3664 aaKnown RBP1.3□□□□□ -2.2
VPS29-210ENST00000552130 MTORP42345 2549 aa1.29□□□□□ -2.2
VPS29-210ENST00000552130 PRCDQ00LT1 54 aa1.29□□□□□ -2.2
VPS29-210ENST00000552130 MYO9AB2RTY4 2548 aa1.29□□□□□ -2.2
VPS29-210ENST00000552130 COL12A1Q99715 3063 aa1.29□□□□□ -2.2
VPS29-210ENST00000552130 USP9YO00507 2555 aaPredicted RBP1.28□□□□□ -2.2
VPS29-210ENST00000552130 TNP1P09430 55 aa1.28□□□□□ -2.2
VPS29-210ENST00000552130 LRRK2Q5S007 2527 aa1.28□□□□□ -2.2
VPS29-210ENST00000552130 TEX15Q9BXT5 2789 aa1.28□□□□□ -2.2
VPS29-210ENST00000552130 KMT2AQ03164 3969 aa1.28□□□□□ -2.21
VPS29-210ENST00000552130 DNHD1Q96M86 4753 aa1.27□□□□□ -2.21
VPS29-210ENST00000552130 BOD1L1Q8NFC6 3051 aa1.27□□□□□ -2.21
VPS29-210ENST00000552130 H3BSH0 61 aa1.27□□□□□ -2.21
VPS29-210ENST00000552130 CCDC168Q8NDH2 2452 aa1.25□□□□□ -2.21
VPS29-210ENST00000552130 DNAH11Q96DT5 4516 aa1.25□□□□□ -2.21
VPS29-210ENST00000552130 ITPR3Q14573 2671 aa1.25□□□□□ -2.21
VPS29-210ENST00000552130 ADGRG4Q8IZF6 3080 aa1.25□□□□□ -2.21
VPS29-210ENST00000552130 HIVEP1P15822 2718 aa1.24□□□□□ -2.21
VPS29-210ENST00000552130 TLN1Q9Y490 2541 aaKnown RBP1.24□□□□□ -2.21
VPS29-210ENST00000552130 DEFB108BQ8NET1 73 aa1.24□□□□□ -2.21
VPS29-210ENST00000552130 DEFB104AQ8WTQ1 72 aa1.24□□□□□ -2.21
VPS29-210ENST00000552130 NBPF19A0A087WUL8 3843 aa1.24□□□□□ -2.21
VPS29-210ENST00000552130 UBR4Q5T4S7 5183 aa1.23□□□□□ -2.21
VPS29-210ENST00000552130 SACSQ9NZJ4 4579 aa1.23□□□□□ -2.21
VPS29-210ENST00000552130 NSD1Q96L73 2696 aaPredicted RBP1.22□□□□□ -2.21
VPS29-210ENST00000552130 LRBAP50851 2863 aa1.22□□□□□ -2.21
VPS29-210ENST00000552130 ITPR2Q14571 2701 aa1.22□□□□□ -2.21
VPS29-210ENST00000552130 TACC2O95359 2948 aa1.22□□□□□ -2.21
VPS29-210ENST00000552130 UTP20O75691 2785 aaKnown RBP1.21□□□□□ -2.22
VPS29-210ENST00000552130 DCHS2Q6V1P9 2916 aa1.21□□□□□ -2.22
VPS29-210ENST00000552130 AKAP9Q99996 3911 aa1.21□□□□□ -2.22
VPS29-210ENST00000552130 ANKHD1Q8IWZ3 2542 aaKnown RBP1.2□□□□□ -2.22
VPS29-210ENST00000552130 CRYBG3Q68DQ2 2970 aa1.2□□□□□ -2.22
VPS29-210ENST00000552130 SPTAN1Q13813 2472 aaKnown RBP1.18□□□□□ -2.22
VPS29-210ENST00000552130 STAB1Q9NY15 2570 aa1.18□□□□□ -2.22
VPS29-210ENST00000552130 PKD1P98161 4303 aa1.18□□□□□ -2.22
VPS29-210ENST00000552130 CUBNO60494 3623 aa1.18□□□□□ -2.22
VPS29-210ENST00000552130 H3BUX3 64 aa1.18□□□□□ -2.22
VPS29-210ENST00000552130 HYDINQ4G0P3 5121 aa1.18□□□□□ -2.22
VPS29-210ENST00000552130 SPG11Q96JI7 2443 aa1.18□□□□□ -2.22
VPS29-210ENST00000552130 CENPEQ02224 2701 aa1.17□□□□□ -2.22
VPS29-210ENST00000552130 NBEAL2Q6ZNJ1 2754 aa1.17□□□□□ -2.22
VPS29-210ENST00000552130 ANK3Q12955 4377 aaKnown RBP1.17□□□□□ -2.22
VPS29-210ENST00000552130 NIPBLQ6KC79 2804 aaeCLIP1.17□□□□□ -2.22
VPS29-210ENST00000552130 SVEP1Q4LDE5 3571 aa1.17□□□□□ -2.22
VPS29-210ENST00000552130 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
VPS29-210ENST00000552130 DNAH3Q8TD57 4116 aa1.16□□□□□ -2.22
VPS29-210ENST00000552130 PCLOQ9Y6V0 5065 aa1.16□□□□□ -2.22
VPS29-210ENST00000552130 TENM2Q9NT68 2774 aa1.16□□□□□ -2.22
VPS29-210ENST00000552130 BIRC6Q9NR09 4857 aa1.16□□□□□ -2.22
VPS29-210ENST00000552130 HRNRQ86YZ3 2850 aaPredicted RBP1.15□□□□□ -2.22
VPS29-210ENST00000552130 SPRR2DP22532 72 aa1.15□□□□□ -2.23
VPS29-210ENST00000552130 MXRA5Q9NR99 2828 aa1.15□□□□□ -2.23
VPS29-210ENST00000552130 FLNAP21333 2647 aaKnown RBP1.15□□□□□ -2.23
VPS29-210ENST00000552130 EPPK1P58107 5090 aaKnown RBP1.14□□□□□ -2.23
VPS29-210ENST00000552130 RYR3Q15413 4870 aa1.14□□□□□ -2.23
VPS29-210ENST00000552130 COL7A1Q02388 2944 aa1.14□□□□□ -2.23
VPS29-210ENST00000552130 K7EIM0 57 aa1.13□□□□□ -2.23
VPS29-210ENST00000552130 SPART-AS1P0CW21 52 aa1.13□□□□□ -2.23
VPS29-210ENST00000552130 VPS13CQ709C8 3753 aa1.13□□□□□ -2.23
VPS29-210ENST00000552130 MYCBP2O75592 4640 aa1.12□□□□□ -2.23
VPS29-210ENST00000552130 LRP1Q07954 4544 aaKnown RBP1.12□□□□□ -2.23
VPS29-210ENST00000552130 VPS13DQ5THJ4 4388 aa1.12□□□□□ -2.23
VPS29-210ENST00000552130 SYNE1Q8NF91 8797 aaKnown RBP1.12□□□□□ -2.23
VPS29-210ENST00000552130 KMT2CQ8NEZ4 4911 aaKnown RBP1.12□□□□□ -2.23
VPS29-210ENST00000552130 KRTAP5-10Q6L8G5 202 aa1.12□□□□□ -2.23
VPS29-210ENST00000552130 SONP18583 2426 aaKnown RBP1.11□□□□□ -2.23
VPS29-210ENST00000552130 HECTD4Q9Y4D8 3996 aa1.11□□□□□ -2.23
VPS29-210ENST00000552130 DEFB136Q30KP8 78 aa1.1□□□□□ -2.23
VPS29-210ENST00000552130 KIAA1109Q2LD37 5005 aa1.1□□□□□ -2.23
VPS29-210ENST00000552130 NBEAL1Q6ZS30 2694 aa1.09□□□□□ -2.23
VPS29-210ENST00000552130 DNAH2Q9P225 4427 aa1.09□□□□□ -2.24
VPS29-210ENST00000552130 DYNC2H1Q8NCM8 4307 aaKnown RBP1.08□□□□□ -2.24
VPS29-210ENST00000552130 LPAP08519 4548 aa1.08□□□□□ -2.24
VPS29-210ENST00000552130 ZANQ9Y493 2812 aa1.08□□□□□ -2.24
VPS29-210ENST00000552130 MAP1AP78559 2803 aaPredicted RBP1.08□□□□□ -2.24
VPS29-210ENST00000552130 RYR2Q92736 4967 aa1.08□□□□□ -2.24
VPS29-210ENST00000552130 TRRAPQ9Y4A5 3859 aa1.07□□□□□ -2.24
VPS29-210ENST00000552130 MGAM2Q2M2H8 2515 aa1.07□□□□□ -2.24
VPS29-210ENST00000552130 TMEM167AQ8TBQ9 72 aa1.07□□□□□ -2.24
VPS29-210ENST00000552130 DNAH1Q9P2D7 4330 aa1.07□□□□□ -2.24
VPS29-210ENST00000552130 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
VPS29-210ENST00000552130 SPRR2BP35325 72 aa1.06□□□□□ -2.24
VPS29-210ENST00000552130 RPL39P5Q59GN2 51 aa1.06□□□□□ -2.24
VPS29-210ENST00000552130 HERC2O95714 4834 aa1.06□□□□□ -2.24
VPS29-210ENST00000552130 PKHD1L1Q86WI1 4243 aa1.06□□□□□ -2.24
VPS29-210ENST00000552130 RYR1P21817 5038 aa1.06□□□□□ -2.24
VPS29-210ENST00000552130 FLGP20930 4061 aaPredicted RBP1.05□□□□□ -2.24
VPS29-210ENST00000552130 HSPG2P98160 4391 aa1.05□□□□□ -2.24
VPS29-210ENST00000552130 RHPN1-AS1Q9BWJ2 59 aa1.05□□□□□ -2.24
VPS29-210ENST00000552130 DNAH9Q9NYC9 4486 aa1.05□□□□□ -2.24
VPS29-210ENST00000552130 AHNAK2Q8IVF2 5795 aa1.04□□□□□ -2.24
VPS29-210ENST00000552130 MUC2Q02817 5179 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms