RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 DNAH1Q9P2D7 4330 aa5.21□□□□□ -1.57
COL4A6-209ENST00000545689 DNAH17Q9UFH2 4485 aa5.19□□□□□ -1.58
COL4A6-209ENST00000545689 COL7A1Q02388 2944 aa5.19□□□□□ -1.58
COL4A6-209ENST00000545689 AKAP9Q99996 3911 aa5.19□□□□□ -1.58
COL4A6-209ENST00000545689 DNAH5Q8TE73 4624 aa5.18□□□□□ -1.58
COL4A6-209ENST00000545689 MUC3AQ02505 3323 aa5.16□□□□□ -1.58
COL4A6-209ENST00000545689 VPS13DQ5THJ4 4388 aa5.15□□□□□ -1.58
COL4A6-209ENST00000545689 DNAH11Q96DT5 4516 aa5.15□□□□□ -1.58
COL4A6-209ENST00000545689 VPS13CQ709C8 3753 aa5.13□□□□□ -1.59
COL4A6-209ENST00000545689 KRTAP4-1Q9BYQ7 146 aa5.09□□□□□ -1.59
COL4A6-209ENST00000545689 CRCT1Q9UGL9 99 aa5.09□□□□□ -1.59
COL4A6-209ENST00000545689 PLECQ15149 4684 aaKnown RBP5.08□□□□□ -1.6
COL4A6-209ENST00000545689 DNAH3Q8TD57 4116 aa5.07□□□□□ -1.6
COL4A6-209ENST00000545689 SPRR2GQ9BYE4 73 aa5.07□□□□□ -1.6
COL4A6-209ENST00000545689 MT1HP80294 61 aa5.04□□□□□ -1.6
COL4A6-209ENST00000545689 KRTAP8-1Q8IUC2 63 aa5□□□□□ -1.61
COL4A6-209ENST00000545689 DYNC1H1Q14204 4646 aaKnown RBP4.99□□□□□ -1.61
COL4A6-209ENST00000545689 DYNC2H1Q8NCM8 4307 aaKnown RBP4.99□□□□□ -1.61
COL4A6-209ENST00000545689 MT2AP02795 61 aa4.98□□□□□ -1.61
COL4A6-209ENST00000545689 SACSQ9NZJ4 4579 aa4.98□□□□□ -1.61
COL4A6-209ENST00000545689 FAT2Q9NYQ8 4349 aa4.91□□□□□ -1.62
COL4A6-209ENST00000545689 KRTAP19-4Q3LI73 84 aa4.9□□□□□ -1.63
COL4A6-209ENST00000545689 DNAH6Q9C0G6 4158 aa4.9□□□□□ -1.63
COL4A6-209ENST00000545689 LRP1BQ9NZR2 4599 aa4.89□□□□□ -1.63
COL4A6-209ENST00000545689 ZNF469Q96JG9 3925 aaPredicted RBP4.89□□□□□ -1.63
COL4A6-209ENST00000545689 DNAH8Q96JB1 4490 aa4.88□□□□□ -1.63
COL4A6-209ENST00000545689 MT1FP04733 61 aa4.86□□□□□ -1.63
COL4A6-209ENST00000545689 KRTAP10-5P60370 271 aa4.85□□□□□ -1.63
COL4A6-209ENST00000545689 STARD9Q9P2P6 4700 aa4.84□□□□□ -1.63
COL4A6-209ENST00000545689 CSMD3Q7Z407 3707 aa4.78□□□□□ -1.64
COL4A6-209ENST00000545689 KRTAP19-5Q3LI72 72 aa4.76□□□□□ -1.65
COL4A6-209ENST00000545689 LCE3CQ5T5A8 94 aa4.76□□□□□ -1.65
COL4A6-209ENST00000545689 ANK2Q01484 3957 aa4.75□□□□□ -1.65
COL4A6-209ENST00000545689 CMYA5Q8N3K9 4069 aa4.74□□□□□ -1.65
COL4A6-209ENST00000545689 KRTAP19-8Q3LI54 63 aa4.73□□□□□ -1.65
COL4A6-209ENST00000545689 PRKDCP78527 4128 aaKnown RBP4.72□□□□□ -1.65
COL4A6-209ENST00000545689 FAT1Q14517 4588 aa4.71□□□□□ -1.66
COL4A6-209ENST00000545689 DNAH7Q8WXX0 4024 aa4.7□□□□□ -1.66
COL4A6-209ENST00000545689 APOBP04114 4563 aaKnown RBP4.69□□□□□ -1.66
COL4A6-209ENST00000545689 DNHD1Q96M86 4753 aa4.68□□□□□ -1.66
COL4A6-209ENST00000545689 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
COL4A6-209ENST00000545689 RYR1P21817 5038 aa4.63□□□□□ -1.67
COL4A6-209ENST00000545689 VPS13BQ7Z7G8 4022 aa4.62□□□□□ -1.67
COL4A6-209ENST00000545689 KRTAP10-7P60409 375 aaPredicted RBP4.62□□□□□ -1.67
COL4A6-209ENST00000545689 HSPG2P98160 4391 aa4.61□□□□□ -1.67
COL4A6-209ENST00000545689 HERC1Q15751 4861 aa4.61□□□□□ -1.67
COL4A6-209ENST00000545689 SPRR2FQ96RM1 72 aa4.58□□□□□ -1.68
COL4A6-209ENST00000545689 FAT3Q8TDW7 4589 aa4.57□□□□□ -1.68
COL4A6-209ENST00000545689 KMT2AQ03164 3969 aa4.56□□□□□ -1.68
COL4A6-209ENST00000545689 RYR2Q92736 4967 aa4.55□□□□□ -1.68
COL4A6-209ENST00000545689 RYR3Q15413 4870 aa4.54□□□□□ -1.68
COL4A6-209ENST00000545689 KRTAP17-1Q9BYP8 105 aa4.54□□□□□ -1.68
COL4A6-209ENST00000545689 MT1XP80297 61 aa4.54□□□□□ -1.68
COL4A6-209ENST00000545689 LRP1Q07954 4544 aaKnown RBP4.51□□□□□ -1.69
COL4A6-209ENST00000545689 SPRR5A0A1B0GTR4 108 aa4.5□□□□□ -1.69
COL4A6-209ENST00000545689 HECTD4Q9Y4D8 3996 aa4.49□□□□□ -1.69
COL4A6-209ENST00000545689 MT1BP07438 61 aa4.49□□□□□ -1.69
COL4A6-209ENST00000545689 MYCBP2O75592 4640 aa4.48□□□□□ -1.69
COL4A6-209ENST00000545689 KRTAP9-8Q9BYQ0 159 aa4.46□□□□□ -1.7
COL4A6-209ENST00000545689 FRAS1Q86XX4 4008 aa4.4□□□□□ -1.7
COL4A6-209ENST00000545689 LCE2CQ5TA81 110 aa4.4□□□□□ -1.71
COL4A6-209ENST00000545689 KRTAP9-3Q9BYQ3 159 aa4.37□□□□□ -1.71
COL4A6-209ENST00000545689 MT1GP13640 62 aa4.31□□□□□ -1.72
COL4A6-209ENST00000545689 SPRR2EP22531 72 aa4.3□□□□□ -1.72
COL4A6-209ENST00000545689 SPRR2BP35325 72 aa4.3□□□□□ -1.72
COL4A6-209ENST00000545689 SPRR2AP35326 72 aa4.3□□□□□ -1.72
COL4A6-209ENST00000545689 LYSTQ99698 3801 aa4.3□□□□□ -1.72
COL4A6-209ENST00000545689 KIAA1109Q2LD37 5005 aa4.29□□□□□ -1.72
COL4A6-209ENST00000545689 PKHD1L1Q86WI1 4243 aa4.28□□□□□ -1.72
COL4A6-209ENST00000545689 PKD1P98161 4303 aa4.26□□□□□ -1.73
COL4A6-209ENST00000545689 LCE3BQ5TA77 95 aa4.24□□□□□ -1.73
COL4A6-209ENST00000545689 KRTAP19-2Q3LHN2 52 aa4.22□□□□□ -1.73
COL4A6-209ENST00000545689 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
COL4A6-209ENST00000545689 KRTAP4-8A0A0G2JLE6 195 aa4.2□□□□□ -1.74
COL4A6-209ENST00000545689 KRTAP4-8Q9BYQ9 185 aa4.2□□□□□ -1.74
COL4A6-209ENST00000545689 LCE2BO14633 110 aa4.2□□□□□ -1.74
COL4A6-209ENST00000545689 BIRC6Q9NR09 4857 aa4.18□□□□□ -1.74
COL4A6-209ENST00000545689 SPRR2DP22532 72 aa4.18□□□□□ -1.74
COL4A6-209ENST00000545689 MUC17Q685J3 4493 aa4.14□□□□□ -1.75
COL4A6-209ENST00000545689 HYDINQ4G0P3 5121 aa4.14□□□□□ -1.75
COL4A6-209ENST00000545689 PKHD1P08F94 4074 aa4.14□□□□□ -1.75
COL4A6-209ENST00000545689 MT1LQ93083 61 aa4.13□□□□□ -1.75
COL4A6-209ENST00000545689 KRTAP19-3Q7Z4W3 81 aa4.13□□□□□ -1.75
COL4A6-209ENST00000545689 TNXBP22105 4242 aa4.13□□□□□ -1.75
COL4A6-209ENST00000545689 HERC2O95714 4834 aa4.1□□□□□ -1.75
COL4A6-209ENST00000545689 LCE3DQ9BYE3 92 aa4.1□□□□□ -1.75
COL4A6-209ENST00000545689 MT1EP04732 61 aa4.09□□□□□ -1.75
COL4A6-209ENST00000545689 LCE3EQ5T5B0 92 aa4.06□□□□□ -1.76
COL4A6-209ENST00000545689 LRP2P98164 4655 aa4.05□□□□□ -1.76
COL4A6-209ENST00000545689 FLGP20930 4061 aaPredicted RBP4.03□□□□□ -1.76
COL4A6-209ENST00000545689 KRTAP19-6Q3LI70 58 aa3.98□□□□□ -1.77
COL4A6-209ENST00000545689 PCLOQ9Y6V0 5065 aa3.97□□□□□ -1.77
COL4A6-209ENST00000545689 LPAP08519 4548 aa3.97□□□□□ -1.77
COL4A6-209ENST00000545689 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
COL4A6-209ENST00000545689 MT1MQ8N339 61 aa3.95□□□□□ -1.78
COL4A6-209ENST00000545689 KMT2CQ8NEZ4 4911 aaKnown RBP3.91□□□□□ -1.78
COL4A6-209ENST00000545689 MT3P25713 68 aa3.85□□□□□ -1.79
COL4A6-209ENST00000545689 LCE2DQ5TA82 110 aaPredicted RBP3.81□□□□□ -1.8
COL4A6-209ENST00000545689 KRTAP19-7Q3SYF9 63 aa3.79□□□□□ -1.8
COL4A6-209ENST00000545689 LCE2AQ5TA79 106 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms