RNA–Protein interactions for RNA: ENST00000545354.1

UBE4A-203, Transcript of ubiquitination factor E4A, humanhuman

TSL 2 BASIC

Gene UBE4A, Length 2,149 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4A-203ENST00000545354 C10orf95Q9H7T3 257 aa2.68□□□□□ -1.98
UBE4A-203ENST00000545354 HERC2O95714 4834 aa2.68□□□□□ -1.98
UBE4A-203ENST00000545354 NOTCH3Q9UM47 2321 aa2.68□□□□□ -1.98
UBE4A-203ENST00000545354 DNAH1Q9P2D7 4330 aa2.66□□□□□ -1.98
UBE4A-203ENST00000545354 DNAH9Q9NYC9 4486 aa2.65□□□□□ -1.98
UBE4A-203ENST00000545354 FLG2Q5D862 2391 aaPredicted RBP2.65□□□□□ -1.99
UBE4A-203ENST00000545354 DNAH3Q8TD57 4116 aa2.64□□□□□ -1.99
UBE4A-203ENST00000545354 H3BNG1 76 aa2.63□□□□□ -1.99
UBE4A-203ENST00000545354 CSMD3Q7Z407 3707 aa2.63□□□□□ -1.99
UBE4A-203ENST00000545354 S4R3F8 94 aa2.62□□□□□ -1.99
UBE4A-203ENST00000545354 STAB2Q8WWQ8 2551 aa2.61□□□□□ -1.99
UBE4A-203ENST00000545354 LYSTQ99698 3801 aa2.61□□□□□ -1.99
UBE4A-203ENST00000545354 A0A096LPF7 62 aa2.61□□□□□ -1.99
UBE4A-203ENST00000545354 APLNQ9ULZ1 77 aa2.61□□□□□ -1.99
UBE4A-203ENST00000545354 KRTAP10-3P60369 221 aa2.6□□□□□ -1.99
UBE4A-203ENST00000545354 FRAS1Q86XX4 4008 aa2.6□□□□□ -1.99
UBE4A-203ENST00000545354 KRTAP10-11P60412 298 aa2.59□□□□□ -1.99
UBE4A-203ENST00000545354 DNAH7Q8WXX0 4024 aa2.59□□□□□ -2
UBE4A-203ENST00000545354 KIAA1109Q2LD37 5005 aa2.58□□□□□ -2
UBE4A-203ENST00000545354 LINC01556Q5JQF7 62 aa2.58□□□□□ -2
UBE4A-203ENST00000545354 ABCA13Q86UQ4 5058 aa2.57□□□□□ -2
UBE4A-203ENST00000545354 STARD9Q9P2P6 4700 aa2.57□□□□□ -2
UBE4A-203ENST00000545354 SPART-AS1P0CW21 52 aa2.56□□□□□ -2
UBE4A-203ENST00000545354 KRTAP7-1Q8IUC3 87 aa2.56□□□□□ -2
UBE4A-203ENST00000545354 A0A096LNI7 61 aa2.55□□□□□ -2
UBE4A-203ENST00000545354 UBR4Q5T4S7 5183 aa2.55□□□□□ -2
UBE4A-203ENST00000545354 HUWE1Q7Z6Z7 4374 aaKnown RBP2.55□□□□□ -2
UBE4A-203ENST00000545354 HERC1Q15751 4861 aa2.55□□□□□ -2
UBE4A-203ENST00000545354 PLECQ15149 4684 aaKnown RBP2.54□□□□□ -2
UBE4A-203ENST00000545354 SPINK6Q6UWN8 80 aa2.53□□□□□ -2.01
UBE4A-203ENST00000545354 A0A0D9SG42 100 aa2.52□□□□□ -2.01
UBE4A-203ENST00000545354 SPRR5A0A1B0GTR4 108 aa2.52□□□□□ -2.01
UBE4A-203ENST00000545354 LCE1AQ5T7P2 110 aa2.51□□□□□ -2.01
UBE4A-203ENST00000545354 KRTAP13-1Q8IUC0 172 aa2.51□□□□□ -2.01
UBE4A-203ENST00000545354 HECTD4Q9Y4D8 3996 aa2.51□□□□□ -2.01
UBE4A-203ENST00000545354 KRTAP10-8P60410 259 aa2.5□□□□□ -2.01
UBE4A-203ENST00000545354 M0QZ58 72 aa2.5□□□□□ -2.01
UBE4A-203ENST00000545354 DNAH10Q8IVF4 4471 aa2.49□□□□□ -2.01
UBE4A-203ENST00000545354 Q5VSD8 79 aa2.49□□□□□ -2.01
UBE4A-203ENST00000545354 PKHD1P08F94 4074 aa2.48□□□□□ -2.01
UBE4A-203ENST00000545354 KMT2AQ03164 3969 aa2.47□□□□□ -2.01
UBE4A-203ENST00000545354 KRTAP12-1P59990 96 aa2.46□□□□□ -2.02
UBE4A-203ENST00000545354 KRTAP10-6P60371 365 aaPredicted RBP2.46□□□□□ -2.02
UBE4A-203ENST00000545354 HTN3P15516 51 aa2.44□□□□□ -2.02
UBE4A-203ENST00000545354 DYNC1H1Q14204 4646 aaKnown RBP2.43□□□□□ -2.02
UBE4A-203ENST00000545354 HSPG2P98160 4391 aa2.43□□□□□ -2.02
UBE4A-203ENST00000545354 VPS13DQ5THJ4 4388 aa2.43□□□□□ -2.02
UBE4A-203ENST00000545354 KRTAP1-5Q9BYS1 174 aa2.42□□□□□ -2.02
UBE4A-203ENST00000545354 KRTAP13-4Q3LI77 160 aa2.42□□□□□ -2.02
UBE4A-203ENST00000545354 FAT2Q9NYQ8 4349 aa2.42□□□□□ -2.02
UBE4A-203ENST00000545354 DNAH2Q9P225 4427 aa2.42□□□□□ -2.02
UBE4A-203ENST00000545354 DNAH11Q96DT5 4516 aa2.41□□□□□ -2.02
UBE4A-203ENST00000545354 DMBT1Q9UGM3 2413 aaPredicted RBP2.4□□□□□ -2.03
UBE4A-203ENST00000545354 KRTAP13-2Q52LG2 175 aa2.4□□□□□ -2.03
UBE4A-203ENST00000545354 SRRM2Q9UQ35 2752 aaKnown RBP2.4□□□□□ -2.03
UBE4A-203ENST00000545354 PKD1P98161 4303 aa2.37□□□□□ -2.03
UBE4A-203ENST00000545354 A0A1B0GVY2 172 aa2.37□□□□□ -2.03
UBE4A-203ENST00000545354 MYCBP2O75592 4640 aa2.37□□□□□ -2.03
UBE4A-203ENST00000545354 DEFB135Q30KP9 77 aa2.36□□□□□ -2.03
UBE4A-203ENST00000545354 DNAH17Q9UFH2 4485 aa2.36□□□□□ -2.03
UBE4A-203ENST00000545354 APOBP04114 4563 aaKnown RBP2.36□□□□□ -2.03
UBE4A-203ENST00000545354 DNAH6Q9C0G6 4158 aa2.35□□□□□ -2.03
UBE4A-203ENST00000545354 HMCN2Q8NDA2 5059 aa2.34□□□□□ -2.03
UBE4A-203ENST00000545354 LRP1BQ9NZR2 4599 aa2.34□□□□□ -2.03
UBE4A-203ENST00000545354 DEFB4AO15263 64 aa2.33□□□□□ -2.04
UBE4A-203ENST00000545354 RPS29P62273 56 aaKnown RBP2.33□□□□□ -2.04
UBE4A-203ENST00000545354 KRTAP2-2Q9BYT5 123 aa2.33□□□□□ -2.04
UBE4A-203ENST00000545354 RNF213Q63HN8 5207 aa2.32□□□□□ -2.04
UBE4A-203ENST00000545354 DNAH5Q8TE73 4624 aa2.31□□□□□ -2.04
UBE4A-203ENST00000545354 FAT1Q14517 4588 aa2.31□□□□□ -2.04
UBE4A-203ENST00000545354 VPS13BQ7Z7G8 4022 aa2.25□□□□□ -2.05
UBE4A-203ENST00000545354 LRP2P98164 4655 aa2.23□□□□□ -2.05
UBE4A-203ENST00000545354 TNP1P09430 55 aa2.23□□□□□ -2.05
UBE4A-203ENST00000545354 KRTAP10-7P60409 375 aaPredicted RBP2.23□□□□□ -2.05
UBE4A-203ENST00000545354 LRP1Q07954 4544 aaKnown RBP2.21□□□□□ -2.06
UBE4A-203ENST00000545354 HMCN1Q96RW7 5635 aa2.2□□□□□ -2.06
UBE4A-203ENST00000545354 MT3P25713 68 aa2.19□□□□□ -2.06
UBE4A-203ENST00000545354 FAT4Q6V0I7 4981 aa2.19□□□□□ -2.06
UBE4A-203ENST00000545354 MUC2Q02817 5179 aa2.18□□□□□ -2.06
UBE4A-203ENST00000545354 C9orf92A6NGG3 77 aa2.17□□□□□ -2.06
UBE4A-203ENST00000545354 KRTAP5-11Q6L8G4 156 aa2.17□□□□□ -2.06
UBE4A-203ENST00000545354 PKHD1L1Q86WI1 4243 aa2.17□□□□□ -2.06
UBE4A-203ENST00000545354 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.17□□□□□ -2.06
UBE4A-203ENST00000545354 FAT3Q8TDW7 4589 aa2.17□□□□□ -2.06
UBE4A-203ENST00000545354 KRTAP10-10P60014 251 aa2.16□□□□□ -2.06
UBE4A-203ENST00000545354 SMR3BP02814 79 aaPredicted RBP2.15□□□□□ -2.06
UBE4A-203ENST00000545354 FSIP2Q5CZC0 6907 aa2.15□□□□□ -2.07
UBE4A-203ENST00000545354 LCE1EQ5T753 118 aa2.15□□□□□ -2.07
UBE4A-203ENST00000545354 KRTAP1-4P0C5Y4 121 aa2.14□□□□□ -2.07
UBE4A-203ENST00000545354 TNXBP22105 4242 aa2.12□□□□□ -2.07
UBE4A-203ENST00000545354 KRTAP10-1P60331 282 aa2.11□□□□□ -2.07
UBE4A-203ENST00000545354 DNAH8Q96JB1 4490 aa2.09□□□□□ -2.07
UBE4A-203ENST00000545354 LPAP08519 4548 aa2.07□□□□□ -2.08
UBE4A-203ENST00000545354 MT1HL1P0DM35 61 aa2.06□□□□□ -2.08
UBE4A-203ENST00000545354 KRTAP10-4P60372 401 aaPredicted RBP2.06□□□□□ -2.08
UBE4A-203ENST00000545354 KRTAP5-9P26371 169 aa2.04□□□□□ -2.08
UBE4A-203ENST00000545354 CRCT1Q9UGL9 99 aa2.04□□□□□ -2.08
UBE4A-203ENST00000545354 KRTAP10-5P60370 271 aa2□□□□□ -2.09
UBE4A-203ENST00000545354 LCE1FQ5T754 118 aa1.98□□□□□ -2.09
UBE4A-203ENST00000545354 KRTAP10-12P60413 245 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms