RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KMT2CQ8NEZ4 4911 aaKnown RBP3.78□□□□□ -1.8
USP28-202ENST00000535607 K7ERS5 55 aa3.78□□□□□ -1.8
USP28-202ENST00000535607 IGLV7-43P04211 117 aa3.78□□□□□ -1.8
USP28-202ENST00000535607 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
USP28-202ENST00000535607 CIRBP-AS1Q8TBR5 109 aa3.77□□□□□ -1.81
USP28-202ENST00000535607 HECTD4Q9Y4D8 3996 aa3.77□□□□□ -1.81
USP28-202ENST00000535607 ADM2Q7Z4H4 148 aa3.76□□□□□ -1.81
USP28-202ENST00000535607 HYDINQ4G0P3 5121 aa3.76□□□□□ -1.81
USP28-202ENST00000535607 RYR2Q92736 4967 aa3.75□□□□□ -1.81
USP28-202ENST00000535607 PSORS1C2Q9UIG4 136 aa3.75□□□□□ -1.81
USP28-202ENST00000535607 PKD1P98161 4303 aa3.73□□□□□ -1.81
USP28-202ENST00000535607 DNAH11Q96DT5 4516 aa3.73□□□□□ -1.81
USP28-202ENST00000535607 PKHD1P08F94 4074 aa3.73□□□□□ -1.81
USP28-202ENST00000535607 KRTAP10-12P60413 245 aa3.72□□□□□ -1.81
USP28-202ENST00000535607 A0A1B0GVY2 172 aa3.71□□□□□ -1.82
USP28-202ENST00000535607 KRTAP10-7P60409 375 aaPredicted RBP3.71□□□□□ -1.82
USP28-202ENST00000535607 KRTAP25-1Q3LHN0 102 aa3.71□□□□□ -1.82
USP28-202ENST00000535607 Q6ZSA8 131 aa3.7□□□□□ -1.82
USP28-202ENST00000535607 PANO1I0J062 215 aa3.69□□□□□ -1.82
USP28-202ENST00000535607 DNAH5Q8TE73 4624 aa3.69□□□□□ -1.82
USP28-202ENST00000535607 ROMO1P60602 79 aa3.68□□□□□ -1.82
USP28-202ENST00000535607 RYR3Q15413 4870 aa3.68□□□□□ -1.82
USP28-202ENST00000535607 A0A1B0GU33 70 aa3.67□□□□□ -1.82
USP28-202ENST00000535607 A8MUU9 505 aa3.67□□□□□ -1.82
USP28-202ENST00000535607 ANAPC11Q9NYG5 84 aa3.67□□□□□ -1.82
USP28-202ENST00000535607 LCE1EQ5T753 118 aa3.66□□□□□ -1.82
USP28-202ENST00000535607 DNAH8Q96JB1 4490 aa3.66□□□□□ -1.82
USP28-202ENST00000535607 SPINK1P00995 79 aa3.65□□□□□ -1.83
USP28-202ENST00000535607 KRTAP10-1P60331 282 aa3.65□□□□□ -1.83
USP28-202ENST00000535607 LRP1BQ9NZR2 4599 aa3.65□□□□□ -1.83
USP28-202ENST00000535607 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
USP28-202ENST00000535607 H1FX-AS1Q4G0G2 97 aa3.63□□□□□ -1.83
USP28-202ENST00000535607 LINC00304Q8N9R0 145 aa3.62□□□□□ -1.83
USP28-202ENST00000535607 APOBP04114 4563 aaKnown RBP3.61□□□□□ -1.83
USP28-202ENST00000535607 H0YAA0 97 aa3.6□□□□□ -1.83
USP28-202ENST00000535607 RPS29P62273 56 aaKnown RBP3.6□□□□□ -1.83
USP28-202ENST00000535607 KRTAP10-5P60370 271 aa3.58□□□□□ -1.84
USP28-202ENST00000535607 VPS13BQ7Z7G8 4022 aa3.57□□□□□ -1.84
USP28-202ENST00000535607 HSPG2P98160 4391 aa3.57□□□□□ -1.84
USP28-202ENST00000535607 COX6B2Q6YFQ2 88 aa3.57□□□□□ -1.84
USP28-202ENST00000535607 LCE3CQ5T5A8 94 aa3.56□□□□□ -1.84
USP28-202ENST00000535607 KRTAP13-2Q52LG2 175 aa3.55□□□□□ -1.84
USP28-202ENST00000535607 SPINT4Q6UDR6 99 aa3.54□□□□□ -1.84
USP28-202ENST00000535607 KRTAP1-4P0C5Y4 121 aa3.53□□□□□ -1.84
USP28-202ENST00000535607 RPL37P61927 97 aaKnown RBP3.53□□□□□ -1.84
USP28-202ENST00000535607 EPPK1P58107 5090 aaKnown RBP3.53□□□□□ -1.84
USP28-202ENST00000535607 KRTAP10-4P60372 401 aaPredicted RBP3.52□□□□□ -1.85
USP28-202ENST00000535607 Q5VSD8 79 aa3.52□□□□□ -1.85
USP28-202ENST00000535607 PKHD1L1Q86WI1 4243 aa3.51□□□□□ -1.85
USP28-202ENST00000535607 SMR3BP02814 79 aaPredicted RBP3.51□□□□□ -1.85
USP28-202ENST00000535607 CRIPTQ9P021 101 aa3.51□□□□□ -1.85
USP28-202ENST00000535607 FAT1Q14517 4588 aa3.51□□□□□ -1.85
USP28-202ENST00000535607 SRRM2Q9UQ35 2752 aaKnown RBP3.51□□□□□ -1.85
USP28-202ENST00000535607 RYR1P21817 5038 aa3.5□□□□□ -1.85
USP28-202ENST00000535607 C20orf166-AS1Q96NR2 134 aa3.5□□□□□ -1.85
USP28-202ENST00000535607 KIAA1109Q2LD37 5005 aa3.47□□□□□ -1.85
USP28-202ENST00000535607 BIRC6Q9NR09 4857 aa3.46□□□□□ -1.86
USP28-202ENST00000535607 P0C880 135 aa3.45□□□□□ -1.86
USP28-202ENST00000535607 HERC2O95714 4834 aa3.42□□□□□ -1.86
USP28-202ENST00000535607 MYCBP2O75592 4640 aa3.4□□□□□ -1.87
USP28-202ENST00000535607 C9orf92A6NGG3 77 aa3.39□□□□□ -1.87
USP28-202ENST00000535607 TNXBP22105 4242 aa3.39□□□□□ -1.87
USP28-202ENST00000535607 FAT3Q8TDW7 4589 aa3.39□□□□□ -1.87
USP28-202ENST00000535607 KRTAP5-11Q6L8G4 156 aa3.38□□□□□ -1.87
USP28-202ENST00000535607 CAMK2N1Q7Z7J9 78 aa3.38□□□□□ -1.87
USP28-202ENST00000535607 KRTAP10-8P60410 259 aa3.37□□□□□ -1.87
USP28-202ENST00000535607 S4R3F8 94 aa3.37□□□□□ -1.87
USP28-202ENST00000535607 A0A0D9SG42 100 aa3.36□□□□□ -1.87
USP28-202ENST00000535607 TPRXLQ17RH7 258 aa3.36□□□□□ -1.87
USP28-202ENST00000535607 LRP1Q07954 4544 aaKnown RBP3.36□□□□□ -1.87
USP28-202ENST00000535607 MT1HL1P0DM35 61 aa3.35□□□□□ -1.87
USP28-202ENST00000535607 FLG2Q5D862 2391 aaPredicted RBP3.33□□□□□ -1.88
USP28-202ENST00000535607 M0QZ58 72 aa3.33□□□□□ -1.88
USP28-202ENST00000535607 ABCA13Q86UQ4 5058 aa3.32□□□□□ -1.88
USP28-202ENST00000535607 KRTAP12-2P59991 146 aa3.3□□□□□ -1.88
USP28-202ENST00000535607 DMBT1Q9UGM3 2413 aaPredicted RBP3.29□□□□□ -1.88
USP28-202ENST00000535607 PCLOQ9Y6V0 5065 aa3.28□□□□□ -1.88
USP28-202ENST00000535607 KRTAP9-6A8MVA2 160 aa3.27□□□□□ -1.89
USP28-202ENST00000535607 KRTAP13-4Q3LI77 160 aa3.27□□□□□ -1.89
USP28-202ENST00000535607 C10orf95Q9H7T3 257 aa3.27□□□□□ -1.89
USP28-202ENST00000535607 KRTAP12-1P59990 96 aa3.25□□□□□ -1.89
USP28-202ENST00000535607 LUZP6Q538Z0 58 aa3.25□□□□□ -1.89
USP28-202ENST00000535607 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
USP28-202ENST00000535607 PP632Q6XCG6 107 aa3.21□□□□□ -1.9
USP28-202ENST00000535607 PLAC4Q8WY50 150 aa3.2□□□□□ -1.9
USP28-202ENST00000535607 HERC1Q15751 4861 aa3.18□□□□□ -1.9
USP28-202ENST00000535607 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.16□□□□□ -1.9
USP28-202ENST00000535607 HMCN2Q8NDA2 5059 aa3.15□□□□□ -1.91
USP28-202ENST00000535607 R4GN34 69 aa3.15□□□□□ -1.91
USP28-202ENST00000535607 LPAP08519 4548 aa3.1□□□□□ -1.91
USP28-202ENST00000535607 LRP2P98164 4655 aa3.09□□□□□ -1.92
USP28-202ENST00000535607 MUC17Q685J3 4493 aa3.07□□□□□ -1.92
USP28-202ENST00000535607 UBR4Q5T4S7 5183 aa2.98□□□□□ -1.93
USP28-202ENST00000535607 TNP1P09430 55 aa2.97□□□□□ -1.93
USP28-202ENST00000535607 KRTAP4-1Q9BYQ7 146 aa2.95□□□□□ -1.94
USP28-202ENST00000535607 MUC2Q02817 5179 aa2.94□□□□□ -1.94
USP28-202ENST00000535607 RNF213Q63HN8 5207 aa2.93□□□□□ -1.94
USP28-202ENST00000535607 INE1O15225 51 aa2.91□□□□□ -1.94
USP28-202ENST00000535607 SPRR5A0A1B0GTR4 108 aa2.9□□□□□ -1.95
USP28-202ENST00000535607 KRTAP19-2Q3LHN2 52 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms