RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 AEBP2Q6ZN18 517 aaPredicted RBP22.67■■□□□ 1.22
USP28-202ENST00000535607 CHIC1Q5VXU3 224 aa22.6■■□□□ 1.21
USP28-202ENST00000535607 PHF23Q9BUL5 403 aaPredicted RBP19.8■□□□□ 0.76
USP28-202ENST00000535607 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
USP28-202ENST00000535607 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
USP28-202ENST00000535607 FOXD1Q16676 465 aa17.84■□□□□ 0.45
USP28-202ENST00000535607 ADRA2BP18089 450 aa17.45■□□□□ 0.38
USP28-202ENST00000535607 PPP6R1Q9UPN7 881 aa17.35■□□□□ 0.37
USP28-202ENST00000535607 PIAS4Q8N2W9 510 aaPredicted RBP17.05■□□□□ 0.32
USP28-202ENST00000535607 MSH5O43196 834 aa16.49■□□□□ 0.23
USP28-202ENST00000535607 PPP4R3CPQ6ZMV5 832 aa16.39■□□□□ 0.21
USP28-202ENST00000535607 KCNA4P22459 653 aa16.34■□□□□ 0.21
USP28-202ENST00000535607 NCBP3Q53F19 620 aaKnown RBP16.21■□□□□ 0.19
USP28-202ENST00000535607 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
USP28-202ENST00000535607 CNKSR2Q8WXI2 1034 aa15.9■□□□□ 0.14
USP28-202ENST00000535607 NPM3O75607 178 aaKnown RBP15.78■□□□□ 0.12
USP28-202ENST00000535607 SLC4A1APQ9BWU0 796 aaKnown RBP15.73■□□□□ 0.11
USP28-202ENST00000535607 MAPK8IP2Q13387 824 aaPredicted RBP15.68■□□□□ 0.1
USP28-202ENST00000535607 EHMT2Q96KQ7 1210 aa15.68■□□□□ 0.1
USP28-202ENST00000535607 DMRT2Q9Y5R5 561 aa15.48■□□□□ 0.07
USP28-202ENST00000535607 RNF216Q9NWF9 866 aaPredicted RBP15.47■□□□□ 0.07
USP28-202ENST00000535607 HOXD11P31277 338 aaPredicted RBP15.25■□□□□ 0.03
USP28-202ENST00000535607 CSRNP3Q8WYN3 585 aa15.19■□□□□ 0.02
USP28-202ENST00000535607 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
USP28-202ENST00000535607 FOXD4L1Q9NU39 408 aa15.03■□□□□ -0
USP28-202ENST00000535607 DCAF8L1A6NGE4 600 aa14.99□□□□□ -0.01
USP28-202ENST00000535607 ZBTB22O15209 634 aa14.93□□□□□ -0.02
USP28-202ENST00000535607 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
USP28-202ENST00000535607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.72□□□□□ -0.05
USP28-202ENST00000535607 MYCNP04198 464 aaPredicted RBP14.68□□□□□ -0.06
USP28-202ENST00000535607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.51□□□□□ -0.09
USP28-202ENST00000535607 HNRNPUL2Q1KMD3 747 aaKnown RBP14.51□□□□□ -0.09
USP28-202ENST00000535607 ATXN8OSP0DMR3 200 aa14.48□□□□□ -0.09
USP28-202ENST00000535607 SAMD1Q6SPF0 538 aaPredicted RBP14.42□□□□□ -0.1
USP28-202ENST00000535607 APLP2Q06481 763 aa14.35□□□□□ -0.11
USP28-202ENST00000535607 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
USP28-202ENST00000535607 POTEDQ86YR6 584 aa14.29□□□□□ -0.12
USP28-202ENST00000535607 ATF5Q9Y2D1 282 aaPredicted RBP14.07□□□□□ -0.16
USP28-202ENST00000535607 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
USP28-202ENST00000535607 C1QBPQ07021 282 aaKnown RBP13.99□□□□□ -0.17
USP28-202ENST00000535607 ZNF219Q9P2Y4 722 aaPredicted RBP13.97□□□□□ -0.17
USP28-202ENST00000535607 CAPN15O75808 1086 aa13.95□□□□□ -0.18
USP28-202ENST00000535607 TRHP20396 242 aaPredicted RBP13.93□□□□□ -0.18
USP28-202ENST00000535607 FKBP8Q14318 412 aa13.85□□□□□ -0.19
USP28-202ENST00000535607 SPINK5Q9NQ38 1064 aaPredicted RBP13.85□□□□□ -0.19
USP28-202ENST00000535607 FBLN2P98095 1184 aa13.75□□□□□ -0.21
USP28-202ENST00000535607 POLA2Q14181 598 aa13.73□□□□□ -0.21
USP28-202ENST00000535607 ZBTB12Q9Y330 459 aaPredicted RBP13.66□□□□□ -0.22
USP28-202ENST00000535607 NISCHQ9Y2I1 1504 aa13.64□□□□□ -0.23
USP28-202ENST00000535607 ABCB7O75027 752 aa13.63□□□□□ -0.23
USP28-202ENST00000535607 CACNB1Q02641 598 aaPredicted RBP13.57□□□□□ -0.24
USP28-202ENST00000535607 SPDYE4A6NLX3 237 aa13.52□□□□□ -0.25
USP28-202ENST00000535607 MKRN4PQ13434 485 aaPredicted RBP13.49□□□□□ -0.25
USP28-202ENST00000535607 DSG3P32926 999 aa13.48□□□□□ -0.25
USP28-202ENST00000535607 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
USP28-202ENST00000535607 AMER1Q5JTC6 1135 aaPredicted RBP13.28□□□□□ -0.28
USP28-202ENST00000535607 ZNF692Q9BU19 519 aaPredicted RBP13.26□□□□□ -0.29
USP28-202ENST00000535607 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
USP28-202ENST00000535607 SPDYE2BA6NHP3 402 aa13.23□□□□□ -0.29
USP28-202ENST00000535607 SPDYE6P0CI01 402 aa13.23□□□□□ -0.29
USP28-202ENST00000535607 SPDYE2Q495Y8 402 aa13.23□□□□□ -0.29
USP28-202ENST00000535607 PROM2Q8N271 834 aa13.17□□□□□ -0.3
USP28-202ENST00000535607 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
USP28-202ENST00000535607 VASPP50552 380 aaPredicted RBP13.07□□□□□ -0.32
USP28-202ENST00000535607 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP28-202ENST00000535607 SSUH2Q9Y2M2 353 aa13.05□□□□□ -0.32
USP28-202ENST00000535607 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
USP28-202ENST00000535607 STAG3Q9UJ98 1225 aa13.01□□□□□ -0.33
USP28-202ENST00000535607 PLEKHG5O94827 1062 aa12.93□□□□□ -0.34
USP28-202ENST00000535607 PLCD3Q8N3E9 789 aa12.91□□□□□ -0.34
USP28-202ENST00000535607 KLHL34Q8N239 644 aa12.9□□□□□ -0.34
USP28-202ENST00000535607 MIER1Q8N108 512 aa12.85□□□□□ -0.35
USP28-202ENST00000535607 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
USP28-202ENST00000535607 IFNLR1Q8IU57 520 aaPredicted RBP12.82□□□□□ -0.36
USP28-202ENST00000535607 SPDYE1Q8NFV5 336 aaPredicted RBP12.8□□□□□ -0.36
USP28-202ENST00000535607 ZBTB47Q9UFB7 747 aaPredicted RBP12.79□□□□□ -0.36
USP28-202ENST00000535607 SPOCK2Q92563 424 aa12.75□□□□□ -0.37
USP28-202ENST00000535607 CLEC11AQ9Y240 323 aa12.75□□□□□ -0.37
USP28-202ENST00000535607 PRR29P0C7W0 189 aa12.67□□□□□ -0.38
USP28-202ENST00000535607 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
USP28-202ENST00000535607 DCAF8L2P0C7V8 631 aa12.65□□□□□ -0.38
USP28-202ENST00000535607 CIZ1Q9ULV3 898 aaPredicted RBP12.55□□□□□ -0.4
USP28-202ENST00000535607 ECM2O94769 699 aaPredicted RBP12.54□□□□□ -0.4
USP28-202ENST00000535607 PITPNM1O00562 1244 aa12.51□□□□□ -0.41
USP28-202ENST00000535607 SLC24A1O60721 1099 aa12.5□□□□□ -0.41
USP28-202ENST00000535607 PKD2Q13563 968 aa12.5□□□□□ -0.41
USP28-202ENST00000535607 GSE1Q14687 1217 aa12.45□□□□□ -0.42
USP28-202ENST00000535607 NPM1P06748 294 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP28-202ENST00000535607 TRIM41Q8WV44 630 aa12.44□□□□□ -0.42
USP28-202ENST00000535607 CREBZFQ9NS37 354 aa12.43□□□□□ -0.42
USP28-202ENST00000535607 FAM212AQ96EL1 285 aa12.41□□□□□ -0.42
USP28-202ENST00000535607 DCAF8Q5TAQ9 597 aa12.4□□□□□ -0.42
USP28-202ENST00000535607 NUBP1P53384 320 aa12.32□□□□□ -0.44
USP28-202ENST00000535607 TAOK2Q9UL54 1235 aa12.3□□□□□ -0.44
USP28-202ENST00000535607 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.29□□□□□ -0.44
USP28-202ENST00000535607 RGL2O15211 777 aa12.28□□□□□ -0.44
USP28-202ENST00000535607 CHADLQ6NUI6 762 aa12.28□□□□□ -0.44
USP28-202ENST00000535607 PRKAR2AP13861 404 aaKnown RBP12.26□□□□□ -0.45
USP28-202ENST00000535607 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
USP28-202ENST00000535607 CHRDL2Q6WN34 429 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms