RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 HELZ2Q9BYK8 2649 aaKnown RBP1.61□□□□□ -2.15
CSDE1-216ENST00000534389 FLNCQ14315 2725 aa1.6□□□□□ -2.15
CSDE1-216ENST00000534389 TRRAPQ9Y4A5 3859 aa1.6□□□□□ -2.15
CSDE1-216ENST00000534389 TENM4Q6N022 2769 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 HUWE1Q7Z6Z7 4374 aaKnown RBP1.59□□□□□ -2.15
CSDE1-216ENST00000534389 FRAS1Q86XX4 4008 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 FAM208BQ5VWN6 2430 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 NOTCH2Q04721 2471 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 APLNQ9ULZ1 77 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 S4R3F8 94 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 DNAH9Q9NYC9 4486 aa1.59□□□□□ -2.15
CSDE1-216ENST00000534389 FLNAP21333 2647 aaKnown RBP1.59□□□□□ -2.16
CSDE1-216ENST00000534389 ANK2Q01484 3957 aa1.59□□□□□ -2.16
CSDE1-216ENST00000534389 DYNC2H1Q8NCM8 4307 aaKnown RBP1.58□□□□□ -2.16
CSDE1-216ENST00000534389 KRTAP12-1P59990 96 aa1.58□□□□□ -2.16
CSDE1-216ENST00000534389 DNAH3Q8TD57 4116 aa1.58□□□□□ -2.16
CSDE1-216ENST00000534389 TEP1Q99973 2627 aaKnown RBP1.58□□□□□ -2.16
CSDE1-216ENST00000534389 DNAH11Q96DT5 4516 aa1.58□□□□□ -2.16
CSDE1-216ENST00000534389 STAB2Q8WWQ8 2551 aa1.57□□□□□ -2.16
CSDE1-216ENST00000534389 DNAH2Q9P225 4427 aa1.57□□□□□ -2.16
CSDE1-216ENST00000534389 TENM1Q9UKZ4 2725 aa1.57□□□□□ -2.16
CSDE1-216ENST00000534389 PDZD2O15018 2839 aa1.57□□□□□ -2.16
CSDE1-216ENST00000534389 MEGF8Q7Z7M0 2845 aa1.57□□□□□ -2.16
CSDE1-216ENST00000534389 CACNA1AO00555 2505 aa1.57□□□□□ -2.16
CSDE1-216ENST00000534389 SACSQ9NZJ4 4579 aa1.56□□□□□ -2.16
CSDE1-216ENST00000534389 NOTCH1P46531 2555 aa1.55□□□□□ -2.16
CSDE1-216ENST00000534389 FLNBO75369 2602 aaKnown RBP1.55□□□□□ -2.16
CSDE1-216ENST00000534389 DMBT1Q9UGM3 2413 aaPredicted RBP1.55□□□□□ -2.16
CSDE1-216ENST00000534389 ZNF469Q96JG9 3925 aaPredicted RBP1.55□□□□□ -2.16
CSDE1-216ENST00000534389 NBEAL1Q6ZS30 2694 aa1.55□□□□□ -2.16
CSDE1-216ENST00000534389 TGP01266 2768 aa1.55□□□□□ -2.16
CSDE1-216ENST00000534389 COL7A1Q02388 2944 aa1.55□□□□□ -2.16
CSDE1-216ENST00000534389 MAST4O15021 2626 aa1.54□□□□□ -2.16
CSDE1-216ENST00000534389 FASNP49327 2511 aaKnown RBP1.54□□□□□ -2.16
CSDE1-216ENST00000534389 LCE3AQ5TA76 89 aa1.54□□□□□ -2.16
CSDE1-216ENST00000534389 UBE2DNLQ8IWF7 75 aa1.54□□□□□ -2.16
CSDE1-216ENST00000534389 MYO18BQ8IUG5 2567 aa1.54□□□□□ -2.16
CSDE1-216ENST00000534389 IGSF10Q6WRI0 2623 aa1.54□□□□□ -2.16
CSDE1-216ENST00000534389 CMYA5Q8N3K9 4069 aa1.54□□□□□ -2.16
CSDE1-216ENST00000534389 CSMD3Q7Z407 3707 aa1.53□□□□□ -2.16
CSDE1-216ENST00000534389 PRKDCP78527 4128 aaKnown RBP1.53□□□□□ -2.16
CSDE1-216ENST00000534389 PLAC4Q8WY50 150 aa1.53□□□□□ -2.16
CSDE1-216ENST00000534389 DNAH6Q9C0G6 4158 aa1.53□□□□□ -2.16
CSDE1-216ENST00000534389 NSD1Q96L73 2696 aaPredicted RBP1.53□□□□□ -2.17
CSDE1-216ENST00000534389 LYSTQ99698 3801 aa1.52□□□□□ -2.17
CSDE1-216ENST00000534389 FBN3Q75N90 2809 aa1.52□□□□□ -2.17
CSDE1-216ENST00000534389 ATRQ13535 2644 aa1.52□□□□□ -2.17
CSDE1-216ENST00000534389 ITPR2Q14571 2701 aa1.51□□□□□ -2.17
CSDE1-216ENST00000534389 C9orf92A6NGG3 77 aa1.51□□□□□ -2.17
CSDE1-216ENST00000534389 KRTAP10-8P60410 259 aa1.51□□□□□ -2.17
CSDE1-216ENST00000534389 COL6A5A8TX70 2615 aa1.51□□□□□ -2.17
CSDE1-216ENST00000534389 USP24Q9UPU5 2620 aa1.51□□□□□ -2.17
CSDE1-216ENST00000534389 MYCBP2O75592 4640 aa1.5□□□□□ -2.17
CSDE1-216ENST00000534389 DNAH7Q8WXX0 4024 aa1.49□□□□□ -2.17
CSDE1-216ENST00000534389 LRP1BQ9NZR2 4599 aa1.49□□□□□ -2.17
CSDE1-216ENST00000534389 PLECQ15149 4684 aaKnown RBP1.48□□□□□ -2.17
CSDE1-216ENST00000534389 HECTD4Q9Y4D8 3996 aa1.48□□□□□ -2.17
CSDE1-216ENST00000534389 KRTAP10-1P60331 282 aa1.48□□□□□ -2.17
CSDE1-216ENST00000534389 PP632Q6XCG6 107 aa1.47□□□□□ -2.17
CSDE1-216ENST00000534389 PKHD1L1Q86WI1 4243 aa1.46□□□□□ -2.18
CSDE1-216ENST00000534389 APOBP04114 4563 aaKnown RBP1.46□□□□□ -2.18
CSDE1-216ENST00000534389 SPRR5A0A1B0GTR4 108 aa1.46□□□□□ -2.18
CSDE1-216ENST00000534389 DNAH5Q8TE73 4624 aa1.46□□□□□ -2.18
CSDE1-216ENST00000534389 RPS29P62273 56 aaKnown RBP1.45□□□□□ -2.18
CSDE1-216ENST00000534389 LCE3DQ9BYE3 92 aa1.45□□□□□ -2.18
CSDE1-216ENST00000534389 PRO2289Q9P1D8 64 aa1.45□□□□□ -2.18
CSDE1-216ENST00000534389 LRP1Q07954 4544 aaKnown RBP1.44□□□□□ -2.18
CSDE1-216ENST00000534389 STAB1Q9NY15 2570 aa1.44□□□□□ -2.18
CSDE1-216ENST00000534389 MGAM2Q2M2H8 2515 aa1.43□□□□□ -2.18
CSDE1-216ENST00000534389 M0QZ58 72 aa1.43□□□□□ -2.18
CSDE1-216ENST00000534389 KRTAP5-5Q701N2 237 aaPredicted RBP1.41□□□□□ -2.18
CSDE1-216ENST00000534389 STARD9Q9P2P6 4700 aa1.41□□□□□ -2.18
CSDE1-216ENST00000534389 DYNC1H1Q14204 4646 aaKnown RBP1.4□□□□□ -2.18
CSDE1-216ENST00000534389 KMT2AQ03164 3969 aa1.4□□□□□ -2.19
CSDE1-216ENST00000534389 FAT2Q9NYQ8 4349 aa1.4□□□□□ -2.19
CSDE1-216ENST00000534389 TNXBP22105 4242 aa1.39□□□□□ -2.19
CSDE1-216ENST00000534389 KRTAP10-4P60372 401 aaPredicted RBP1.39□□□□□ -2.19
CSDE1-216ENST00000534389 J3QKU1 62 aa1.38□□□□□ -2.19
CSDE1-216ENST00000534389 KRTAP10-10P60014 251 aa1.38□□□□□ -2.19
CSDE1-216ENST00000534389 PKD1P98161 4303 aa1.38□□□□□ -2.19
CSDE1-216ENST00000534389 VPS13BQ7Z7G8 4022 aa1.37□□□□□ -2.19
CSDE1-216ENST00000534389 PKHD1P08F94 4074 aa1.37□□□□□ -2.19
CSDE1-216ENST00000534389 FAT3Q8TDW7 4589 aa1.37□□□□□ -2.19
CSDE1-216ENST00000534389 HSPG2P98160 4391 aa1.36□□□□□ -2.19
CSDE1-216ENST00000534389 FAT1Q14517 4588 aa1.36□□□□□ -2.19
CSDE1-216ENST00000534389 INE1O15225 51 aa1.36□□□□□ -2.19
CSDE1-216ENST00000534389 R4GN34 69 aa1.36□□□□□ -2.19
CSDE1-216ENST00000534389 SMR3BP02814 79 aaPredicted RBP1.34□□□□□ -2.19
CSDE1-216ENST00000534389 LCE1CQ5T751 118 aa1.31□□□□□ -2.2
CSDE1-216ENST00000534389 LCE1BQ5T7P3 118 aa1.31□□□□□ -2.2
CSDE1-216ENST00000534389 HERC1Q15751 4861 aa1.28□□□□□ -2.2
CSDE1-216ENST00000534389 HYDINQ4G0P3 5121 aa1.28□□□□□ -2.2
CSDE1-216ENST00000534389 Q5VSD8 79 aa1.28□□□□□ -2.2
CSDE1-216ENST00000534389 TNP1P09430 55 aa1.27□□□□□ -2.21
CSDE1-216ENST00000534389 KRTAP19-2Q3LHN2 52 aa1.27□□□□□ -2.21
CSDE1-216ENST00000534389 KRTAP4-1Q9BYQ7 146 aa1.26□□□□□ -2.21
CSDE1-216ENST00000534389 FLGP20930 4061 aaPredicted RBP1.25□□□□□ -2.21
CSDE1-216ENST00000534389 MT1HL1P0DM35 61 aa1.24□□□□□ -2.21
CSDE1-216ENST00000534389 LPAP08519 4548 aa1.23□□□□□ -2.21
CSDE1-216ENST00000534389 DNHD1Q96M86 4753 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms