RNA–Protein interactions for RNA: ENST00000532566.3

PCDHA3-202, Transcript of protocadherin alpha 3, humanhuman

BASIC

Gene PCDHA3, Length 4,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-202ENST00000532566 KRTAP4-5Q9BYR2 181 aa7.11□□□□□ -1.27
PCDHA3-202ENST00000532566 DNHD1Q96M86 4753 aa7.09□□□□□ -1.28
PCDHA3-202ENST00000532566 VPS13DQ5THJ4 4388 aa7.08□□□□□ -1.28
PCDHA3-202ENST00000532566 DNAH10Q8IVF4 4471 aa7.06□□□□□ -1.28
PCDHA3-202ENST00000532566 DNAH17Q9UFH2 4485 aa7.02□□□□□ -1.28
PCDHA3-202ENST00000532566 STARD9Q9P2P6 4700 aa6.97□□□□□ -1.29
PCDHA3-202ENST00000532566 DYNC1H1Q14204 4646 aaKnown RBP6.88□□□□□ -1.31
PCDHA3-202ENST00000532566 FAT1Q14517 4588 aa6.85□□□□□ -1.31
PCDHA3-202ENST00000532566 PRKDCP78527 4128 aaKnown RBP6.83□□□□□ -1.32
PCDHA3-202ENST00000532566 DNAH2Q9P225 4427 aa6.83□□□□□ -1.32
PCDHA3-202ENST00000532566 LRP1BQ9NZR2 4599 aa6.83□□□□□ -1.32
PCDHA3-202ENST00000532566 DNAH8Q96JB1 4490 aa6.77□□□□□ -1.33
PCDHA3-202ENST00000532566 DNAH3Q8TD57 4116 aa6.76□□□□□ -1.33
PCDHA3-202ENST00000532566 ANK2Q01484 3957 aa6.74□□□□□ -1.33
PCDHA3-202ENST00000532566 LORP23490 312 aaPredicted RBP6.74□□□□□ -1.33
PCDHA3-202ENST00000532566 DYNC2H1Q8NCM8 4307 aaKnown RBP6.73□□□□□ -1.33
PCDHA3-202ENST00000532566 KRTAP15-1Q3LI76 137 aa6.71□□□□□ -1.34
PCDHA3-202ENST00000532566 KMT2AQ03164 3969 aa6.68□□□□□ -1.34
PCDHA3-202ENST00000532566 SACSQ9NZJ4 4579 aa6.66□□□□□ -1.34
PCDHA3-202ENST00000532566 RYR1P21817 5038 aa6.65□□□□□ -1.35
PCDHA3-202ENST00000532566 FAT2Q9NYQ8 4349 aa6.63□□□□□ -1.35
PCDHA3-202ENST00000532566 KRTAP4-1Q9BYQ7 146 aa6.62□□□□□ -1.35
PCDHA3-202ENST00000532566 KRTAP10-12P60413 245 aa6.58□□□□□ -1.36
PCDHA3-202ENST00000532566 KRTAP23-1A1A580 65 aa6.55□□□□□ -1.36
PCDHA3-202ENST00000532566 VPS13BQ7Z7G8 4022 aa6.54□□□□□ -1.36
PCDHA3-202ENST00000532566 KIAA1109Q2LD37 5005 aa6.53□□□□□ -1.36
PCDHA3-202ENST00000532566 LYSTQ99698 3801 aa6.51□□□□□ -1.37
PCDHA3-202ENST00000532566 CMYA5Q8N3K9 4069 aa6.51□□□□□ -1.37
PCDHA3-202ENST00000532566 APOBP04114 4563 aaKnown RBP6.48□□□□□ -1.37
PCDHA3-202ENST00000532566 MYCBP2O75592 4640 aa6.45□□□□□ -1.38
PCDHA3-202ENST00000532566 KRTAP12-3P60328 96 aa6.43□□□□□ -1.38
PCDHA3-202ENST00000532566 LCE3AQ5TA76 89 aa6.43□□□□□ -1.38
PCDHA3-202ENST00000532566 RYR3Q15413 4870 aa6.4□□□□□ -1.38
PCDHA3-202ENST00000532566 DNAH6Q9C0G6 4158 aa6.38□□□□□ -1.39
PCDHA3-202ENST00000532566 HECTD4Q9Y4D8 3996 aa6.38□□□□□ -1.39
PCDHA3-202ENST00000532566 KRTAP17-1Q9BYP8 105 aa6.36□□□□□ -1.39
PCDHA3-202ENST00000532566 FRAS1Q86XX4 4008 aa6.36□□□□□ -1.39
PCDHA3-202ENST00000532566 LRP1Q07954 4544 aaKnown RBP6.34□□□□□ -1.39
PCDHA3-202ENST00000532566 DNAH7Q8WXX0 4024 aa6.34□□□□□ -1.39
PCDHA3-202ENST00000532566 MT1HP80294 61 aa6.33□□□□□ -1.4
PCDHA3-202ENST00000532566 SPRR2GQ9BYE4 73 aa6.29□□□□□ -1.4
PCDHA3-202ENST00000532566 MT2AP02795 61 aa6.27□□□□□ -1.41
PCDHA3-202ENST00000532566 RYR2Q92736 4967 aa6.27□□□□□ -1.41
PCDHA3-202ENST00000532566 HYDINQ4G0P3 5121 aa6.24□□□□□ -1.41
PCDHA3-202ENST00000532566 FAT3Q8TDW7 4589 aa6.23□□□□□ -1.41
PCDHA3-202ENST00000532566 INE1O15225 51 aa6.19□□□□□ -1.42
PCDHA3-202ENST00000532566 MT1FP04733 61 aa6.17□□□□□ -1.42
PCDHA3-202ENST00000532566 PKHD1P08F94 4074 aa6.12□□□□□ -1.43
PCDHA3-202ENST00000532566 HERC2O95714 4834 aa6.07□□□□□ -1.44
PCDHA3-202ENST00000532566 CRCT1Q9UGL9 99 aa6.06□□□□□ -1.44
PCDHA3-202ENST00000532566 LRP2P98164 4655 aa6.06□□□□□ -1.44
PCDHA3-202ENST00000532566 HSPG2P98160 4391 aa6.02□□□□□ -1.45
PCDHA3-202ENST00000532566 KRTAP19-1Q8IUB9 90 aa5.99□□□□□ -1.45
PCDHA3-202ENST00000532566 PKD1P98161 4303 aa5.98□□□□□ -1.45
PCDHA3-202ENST00000532566 KRTAP8-1Q8IUC2 63 aa5.97□□□□□ -1.45
PCDHA3-202ENST00000532566 KRTAP19-8Q3LI54 63 aa5.91□□□□□ -1.46
PCDHA3-202ENST00000532566 KMT2CQ8NEZ4 4911 aaKnown RBP5.89□□□□□ -1.47
PCDHA3-202ENST00000532566 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
PCDHA3-202ENST00000532566 KRTAP19-5Q3LI72 72 aa5.82□□□□□ -1.48
PCDHA3-202ENST00000532566 LCE2CQ5TA81 110 aa5.81□□□□□ -1.48
PCDHA3-202ENST00000532566 KRTAP9-8Q9BYQ0 159 aa5.78□□□□□ -1.48
PCDHA3-202ENST00000532566 HERC1Q15751 4861 aa5.76□□□□□ -1.49
PCDHA3-202ENST00000532566 LPAP08519 4548 aa5.75□□□□□ -1.49
PCDHA3-202ENST00000532566 KRTAP10-7P60409 375 aaPredicted RBP5.74□□□□□ -1.49
PCDHA3-202ENST00000532566 MT1BP07438 61 aa5.74□□□□□ -1.49
PCDHA3-202ENST00000532566 MT1XP80297 61 aa5.73□□□□□ -1.49
PCDHA3-202ENST00000532566 PCLOQ9Y6V0 5065 aa5.72□□□□□ -1.49
PCDHA3-202ENST00000532566 PKHD1L1Q86WI1 4243 aa5.72□□□□□ -1.49
PCDHA3-202ENST00000532566 LCE3CQ5T5A8 94 aa5.71□□□□□ -1.5
PCDHA3-202ENST00000532566 TNXBP22105 4242 aa5.7□□□□□ -1.5
PCDHA3-202ENST00000532566 KRTAP19-2Q3LHN2 52 aa5.7□□□□□ -1.5
PCDHA3-202ENST00000532566 KRTAP10-5P60370 271 aa5.69□□□□□ -1.5
PCDHA3-202ENST00000532566 KRTAP19-4Q3LI73 84 aa5.63□□□□□ -1.51
PCDHA3-202ENST00000532566 EPPK1P58107 5090 aaKnown RBP5.61□□□□□ -1.51
PCDHA3-202ENST00000532566 KRTAP9-3Q9BYQ3 159 aa5.61□□□□□ -1.51
PCDHA3-202ENST00000532566 MUC17Q685J3 4493 aa5.6□□□□□ -1.51
PCDHA3-202ENST00000532566 ABCA13Q86UQ4 5058 aa5.59□□□□□ -1.51
PCDHA3-202ENST00000532566 SPRR2FQ96RM1 72 aa5.57□□□□□ -1.52
PCDHA3-202ENST00000532566 SPRR5A0A1B0GTR4 108 aa5.52□□□□□ -1.53
PCDHA3-202ENST00000532566 FLGP20930 4061 aaPredicted RBP5.49□□□□□ -1.53
PCDHA3-202ENST00000532566 KRTAP4-8A0A0G2JLE6 195 aa5.43□□□□□ -1.54
PCDHA3-202ENST00000532566 KRTAP4-8Q9BYQ9 185 aa5.43□□□□□ -1.54
PCDHA3-202ENST00000532566 FSIP2Q5CZC0 6907 aa5.38□□□□□ -1.55
PCDHA3-202ENST00000532566 LCE2BO14633 110 aa5.36□□□□□ -1.55
PCDHA3-202ENST00000532566 UBR4Q5T4S7 5183 aa5.28□□□□□ -1.56
PCDHA3-202ENST00000532566 SYNE1Q8NF91 8797 aaKnown RBP5.28□□□□□ -1.56
PCDHA3-202ENST00000532566 RNF213Q63HN8 5207 aa5.28□□□□□ -1.56
PCDHA3-202ENST00000532566 FAT4Q6V0I7 4981 aa5.27□□□□□ -1.57
PCDHA3-202ENST00000532566 MT1GP13640 62 aa5.23□□□□□ -1.57
PCDHA3-202ENST00000532566 HMCN2Q8NDA2 5059 aa5.19□□□□□ -1.58
PCDHA3-202ENST00000532566 SPRR2EP22531 72 aa5.14□□□□□ -1.59
PCDHA3-202ENST00000532566 SPRR2BP35325 72 aa5.14□□□□□ -1.59
PCDHA3-202ENST00000532566 SPRR2AP35326 72 aa5.14□□□□□ -1.59
PCDHA3-202ENST00000532566 MT1LQ93083 61 aa5.13□□□□□ -1.59
PCDHA3-202ENST00000532566 MT1EP04732 61 aa5.11□□□□□ -1.59
PCDHA3-202ENST00000532566 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
PCDHA3-202ENST00000532566 LCE3BQ5TA77 95 aa5.1□□□□□ -1.59
PCDHA3-202ENST00000532566 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
PCDHA3-202ENST00000532566 LCE2AQ5TA79 106 aaPredicted RBP5.07□□□□□ -1.6
PCDHA3-202ENST00000532566 MUC2Q02817 5179 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms