RNA–Protein interactions for RNA: ENST00000532566.3

PCDHA3-202, Transcript of protocadherin alpha 3, humanhuman

BASIC

Gene PCDHA3, Length 4,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-202ENST00000532566 NISCHQ9Y2I1 1504 aa27.69■■■□□ 2.02
PCDHA3-202ENST00000532566 DCAF8L2P0C7V8 631 aa26.81■■□□□ 1.88
PCDHA3-202ENST00000532566 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
PCDHA3-202ENST00000532566 SHROOM4Q9ULL8 1493 aa25.69■■□□□ 1.7
PCDHA3-202ENST00000532566 EHMT2Q96KQ7 1210 aa24.5■■□□□ 1.51
PCDHA3-202ENST00000532566 FAM9AQ8IZU1 332 aaPredicted RBP24.22■■□□□ 1.47
PCDHA3-202ENST00000532566 PCGF6Q9BYE7 350 aa24.08■■□□□ 1.45
PCDHA3-202ENST00000532566 TRIM41Q8WV44 630 aa24.03■■□□□ 1.44
PCDHA3-202ENST00000532566 APLP2Q06481 763 aa23.94■■□□□ 1.42
PCDHA3-202ENST00000532566 TTBK1Q5TCY1 1321 aaPredicted RBP23.68■■□□□ 1.38
PCDHA3-202ENST00000532566 CHIC1Q5VXU3 224 aa23.62■■□□□ 1.37
PCDHA3-202ENST00000532566 ZEB1P37275 1124 aaPredicted RBP23.56■■□□□ 1.36
PCDHA3-202ENST00000532566 UBTFP17480 764 aaKnown RBP23.49■■□□□ 1.35
PCDHA3-202ENST00000532566 RANGAP1P46060 587 aaPredicted RBP23.45■■□□□ 1.34
PCDHA3-202ENST00000532566 CCER1Q8TC90 406 aaPredicted RBP23.4■■□□□ 1.34
PCDHA3-202ENST00000532566 LOC105371045A0A1W2PR82 267 aa23.33■■□□□ 1.32
PCDHA3-202ENST00000532566 TRIM26Q12899 539 aaPredicted RBP23.3■■□□□ 1.32
PCDHA3-202ENST00000532566 ABCC9O60706 1549 aa23.21■■□□□ 1.31
PCDHA3-202ENST00000532566 PELP1Q8IZL8 1130 aaKnown RBP23.19■■□□□ 1.3
PCDHA3-202ENST00000532566 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
PCDHA3-202ENST00000532566 HRCP23327 699 aa23.16■■□□□ 1.3
PCDHA3-202ENST00000532566 ATP1B4Q9UN42 357 aaPredicted RBP23.09■■□□□ 1.29
PCDHA3-202ENST00000532566 ZCCHC6Q5VYS8 1495 aaKnown RBP23.06■■□□□ 1.28
PCDHA3-202ENST00000532566 CENPBP07199 599 aaPredicted RBP23.04■■□□□ 1.28
PCDHA3-202ENST00000532566 CCDC180Q9P1Z9 1646 aa22.89■■□□□ 1.25
PCDHA3-202ENST00000532566 PABPN1Q86U42 306 aaKnown RBP eCLIP22.82■■□□□ 1.24
PCDHA3-202ENST00000532566 HNRNPUL2Q1KMD3 747 aaKnown RBP22.64■■□□□ 1.21
PCDHA3-202ENST00000532566 YTHDC1Q96MU7 727 aaKnown RBP22.58■■□□□ 1.21
PCDHA3-202ENST00000532566 SCRIBQ14160 1630 aa22.58■■□□□ 1.21
PCDHA3-202ENST00000532566 ITGAEP38570 1179 aa22.57■■□□□ 1.2
PCDHA3-202ENST00000532566 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.52■■□□□ 1.2
PCDHA3-202ENST00000532566 NEFLP07196 543 aa22.33■■□□□ 1.16
PCDHA3-202ENST00000532566 CSRNP3Q8WYN3 585 aa22.33■■□□□ 1.16
PCDHA3-202ENST00000532566 DIEXFQ68CQ4 756 aaKnown RBP22.23■■□□□ 1.15
PCDHA3-202ENST00000532566 DCAF1Q9Y4B6 1507 aa22.22■■□□□ 1.15
PCDHA3-202ENST00000532566 FAM50AQ14320 339 aaKnown RBP22.13■■□□□ 1.13
PCDHA3-202ENST00000532566 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
PCDHA3-202ENST00000532566 ERICH6Q7L0X2 663 aa22.09■■□□□ 1.13
PCDHA3-202ENST00000532566 MYO15BQ96JP2 1530 aa22.04■■□□□ 1.12
PCDHA3-202ENST00000532566 RB1CC1Q8TDY2 1594 aa22.03■■□□□ 1.12
PCDHA3-202ENST00000532566 NACADO15069 1562 aa22.01■■□□□ 1.11
PCDHA3-202ENST00000532566 POLR3GLQ9BT43 218 aa21.95■■□□□ 1.1
PCDHA3-202ENST00000532566 MYT1LQ9UL68 1186 aa21.89■■□□□ 1.09
PCDHA3-202ENST00000532566 ZNF316A6NFI3 1004 aaPredicted RBP21.88■■□□□ 1.09
PCDHA3-202ENST00000532566 NEUROD1Q13562 356 aa21.87■■□□□ 1.09
PCDHA3-202ENST00000532566 TRIM52Q96A61 297 aa21.85■■□□□ 1.09
PCDHA3-202ENST00000532566 P3H3Q8IVL6 736 aa21.84■■□□□ 1.09
PCDHA3-202ENST00000532566 CNGB1Q14028 1251 aaPredicted RBP21.75■■□□□ 1.07
PCDHA3-202ENST00000532566 EEA1Q15075 1411 aa21.71■■□□□ 1.07
PCDHA3-202ENST00000532566 MYT1Q01538 1121 aa21.7■■□□□ 1.06
PCDHA3-202ENST00000532566 CECR2Q9BXF3 1484 aa21.69■■□□□ 1.06
PCDHA3-202ENST00000532566 FBLN2P98095 1184 aa21.68■■□□□ 1.06
PCDHA3-202ENST00000532566 BAZ1AQ9NRL2 1556 aaPredicted RBP21.67■■□□□ 1.06
PCDHA3-202ENST00000532566 GTF3C3Q9Y5Q9 886 aa21.66■■□□□ 1.06
PCDHA3-202ENST00000532566 CLIP1P30622 1438 aa21.63■■□□□ 1.05
PCDHA3-202ENST00000532566 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.05
PCDHA3-202ENST00000532566 ANP32CO43423 234 aa21.59■■□□□ 1.05
PCDHA3-202ENST00000532566 CEP162Q5TB80 1403 aa21.58■■□□□ 1.05
PCDHA3-202ENST00000532566 GOLGA3Q08378 1498 aa21.58■■□□□ 1.04
PCDHA3-202ENST00000532566 ARID3CA6NKF2 412 aa21.56■■□□□ 1.04
PCDHA3-202ENST00000532566 BAZ1BQ9UIG0 1483 aaKnown RBP21.55■■□□□ 1.04
PCDHA3-202ENST00000532566 ACIN1Q9UKV3 1341 aaKnown RBP21.55■■□□□ 1.04
PCDHA3-202ENST00000532566 ZNF326Q5BKZ1 582 aaKnown RBP21.49■■□□□ 1.03
PCDHA3-202ENST00000532566 TNIKQ9UKE5 1360 aa21.49■■□□□ 1.03
PCDHA3-202ENST00000532566 CDK11AQ9UQ88 783 aaPredicted RBP21.48■■□□□ 1.03
PCDHA3-202ENST00000532566 MROH2BQ7Z745 1585 aa21.46■■□□□ 1.03
PCDHA3-202ENST00000532566 CEP164Q9UPV0 1460 aa21.41■■□□□ 1.02
PCDHA3-202ENST00000532566 ZNF777Q9ULD5 760 aaPredicted RBP21.38■■□□□ 1.01
PCDHA3-202ENST00000532566 TONSLQ96HA7 1378 aa21.37■■□□□ 1.01
PCDHA3-202ENST00000532566 SLC4A1APQ9BWU0 796 aaKnown RBP21.35■■□□□ 1.01
PCDHA3-202ENST00000532566 BCANQ96GW7 911 aa21.34■■□□□ 1.01
PCDHA3-202ENST00000532566 KIF27Q86VH2 1401 aa21.33■■□□□ 1.01
PCDHA3-202ENST00000532566 DAXXQ9UER7 740 aaPredicted RBP21.31■■□□□ 1
PCDHA3-202ENST00000532566 MTUS2Q5JR59 1369 aa21.3■■□□□ 1
PCDHA3-202ENST00000532566 CCDC88BA6NC98 1476 aa21.27■■□□□ 1
PCDHA3-202ENST00000532566 SOGA1O94964 1423 aa21.27■■□□□ 1
PCDHA3-202ENST00000532566 DDX10Q13206 875 aaKnown RBP21.21■□□□□ 0.99
PCDHA3-202ENST00000532566 CHIC2Q9UKJ5 165 aa21.21■□□□□ 0.99
PCDHA3-202ENST00000532566 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
PCDHA3-202ENST00000532566 WIZO95785 1651 aa21.16■□□□□ 0.98
PCDHA3-202ENST00000532566 CLSPNQ9HAW4 1339 aa21.15■□□□□ 0.98
PCDHA3-202ENST00000532566 MIER1Q8N108 512 aa21.12■□□□□ 0.97
PCDHA3-202ENST00000532566 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
PCDHA3-202ENST00000532566 CHMP7Q8WUX9 453 aaPredicted RBP21.09■□□□□ 0.97
PCDHA3-202ENST00000532566 SMARCA2P51531 1590 aa21.07■□□□□ 0.96
PCDHA3-202ENST00000532566 TSPY4P0CV99 314 aa21.02■□□□□ 0.96
PCDHA3-202ENST00000532566 TSPY10P0CW01 314 aa21.02■□□□□ 0.96
PCDHA3-202ENST00000532566 HNRNPUQ00839 825 aaKnown RBP eCLIP21.01■□□□□ 0.95
PCDHA3-202ENST00000532566 VPS8Q8N3P4 1428 aa21.01■□□□□ 0.95
PCDHA3-202ENST00000532566 RRP7BPQ9NSQ0 103 aa21■□□□□ 0.95
PCDHA3-202ENST00000532566 CUX2O14529 1486 aa21■□□□□ 0.95
PCDHA3-202ENST00000532566 CARMIL1Q5VZK9 1371 aa20.99■□□□□ 0.95
PCDHA3-202ENST00000532566 SCAF1Q9H7N4 1312 aaKnown RBP20.99■□□□□ 0.95
PCDHA3-202ENST00000532566 FKBP8Q14318 412 aa20.98■□□□□ 0.95
PCDHA3-202ENST00000532566 RTL5Q5HYW3 569 aaPredicted RBP20.97■□□□□ 0.95
PCDHA3-202ENST00000532566 HIRIP3Q9BW71 556 aaPredicted RBP20.95■□□□□ 0.94
PCDHA3-202ENST00000532566 FHAD1B1AJZ9 1412 aa20.95■□□□□ 0.94
PCDHA3-202ENST00000532566 CCNB3Q8WWL7 1395 aa20.93■□□□□ 0.94
PCDHA3-202ENST00000532566 FAM9BQ8IZU0 186 aa20.92■□□□□ 0.94
PCDHA3-202ENST00000532566 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 260.6 ms