RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 DEFB4AO15263 64 aa2.44□□□□□ -2.02
CD44-231ENST00000531110 SMG1Q96Q15 3661 aaKnown RBP2.44□□□□□ -2.02
CD44-231ENST00000531110 NIPBLQ6KC79 2804 aaeCLIP2.44□□□□□ -2.02
CD44-231ENST00000531110 SETD2Q9BYW2 2564 aaPredicted RBP2.43□□□□□ -2.02
CD44-231ENST00000531110 HRNRQ86YZ3 2850 aaPredicted RBP2.42□□□□□ -2.02
CD44-231ENST00000531110 CSMD1Q96PZ7 3565 aa2.42□□□□□ -2.02
CD44-231ENST00000531110 BSNQ9UPA5 3926 aa2.41□□□□□ -2.02
CD44-231ENST00000531110 LAMA5O15230 3695 aa2.4□□□□□ -2.03
CD44-231ENST00000531110 MTORP42345 2549 aa2.39□□□□□ -2.03
CD44-231ENST00000531110 DCHS2Q6V1P9 2916 aa2.39□□□□□ -2.03
CD44-231ENST00000531110 POLQO75417 2590 aa2.39□□□□□ -2.03
CD44-231ENST00000531110 DNAH1Q9P2D7 4330 aa2.38□□□□□ -2.03
CD44-231ENST00000531110 LRRK2Q5S007 2527 aa2.38□□□□□ -2.03
CD44-231ENST00000531110 FBN2P35556 2912 aa2.36□□□□□ -2.03
CD44-231ENST00000531110 ACANP16112 2415 aa2.36□□□□□ -2.03
CD44-231ENST00000531110 FBN3Q75N90 2809 aa2.35□□□□□ -2.03
CD44-231ENST00000531110 TRRAPQ9Y4A5 3859 aa2.34□□□□□ -2.03
CD44-231ENST00000531110 ADGRG4Q8IZF6 3080 aa2.34□□□□□ -2.03
CD44-231ENST00000531110 DNAH11Q96DT5 4516 aa2.34□□□□□ -2.03
CD44-231ENST00000531110 DMBT1Q9UGM3 2413 aaPredicted RBP2.33□□□□□ -2.04
CD44-231ENST00000531110 TGP01266 2768 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 FLNCQ14315 2725 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 ITPR2Q14571 2701 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 C9orf92A6NGG3 77 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 TNP1P09430 55 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 SMR3AQ99954 134 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 RELNP78509 3460 aa2.33□□□□□ -2.04
CD44-231ENST00000531110 USP9YO00507 2555 aaPredicted RBP2.32□□□□□ -2.04
CD44-231ENST00000531110 NBEAL1Q6ZS30 2694 aa2.32□□□□□ -2.04
CD44-231ENST00000531110 FRAS1Q86XX4 4008 aa2.31□□□□□ -2.04
CD44-231ENST00000531110 NBEAL2Q6ZNJ1 2754 aa2.3□□□□□ -2.04
CD44-231ENST00000531110 LYSTQ99698 3801 aa2.28□□□□□ -2.04
CD44-231ENST00000531110 PDZD2O15018 2839 aa2.27□□□□□ -2.05
CD44-231ENST00000531110 ANK2Q01484 3957 aa2.27□□□□□ -2.05
CD44-231ENST00000531110 J3QKU1 62 aa2.27□□□□□ -2.05
CD44-231ENST00000531110 DNHD1Q96M86 4753 aa2.27□□□□□ -2.05
CD44-231ENST00000531110 MXRA5Q9NR99 2828 aa2.27□□□□□ -2.05
CD44-231ENST00000531110 COL7A1Q02388 2944 aa2.25□□□□□ -2.05
CD44-231ENST00000531110 CMYA5Q8N3K9 4069 aa2.25□□□□□ -2.05
CD44-231ENST00000531110 HIVEP1P15822 2718 aa2.24□□□□□ -2.05
CD44-231ENST00000531110 KRTAP5-7Q6L8G8 165 aa2.24□□□□□ -2.05
CD44-231ENST00000531110 ANK3Q12955 4377 aaKnown RBP2.23□□□□□ -2.05
CD44-231ENST00000531110 DYNC2H1Q8NCM8 4307 aaKnown RBP2.23□□□□□ -2.05
CD44-231ENST00000531110 MYCBP2O75592 4640 aa2.23□□□□□ -2.05
CD44-231ENST00000531110 DNAH8Q96JB1 4490 aa2.23□□□□□ -2.05
CD44-231ENST00000531110 ATRQ13535 2644 aa2.22□□□□□ -2.05
CD44-231ENST00000531110 DNAH6Q9C0G6 4158 aa2.22□□□□□ -2.05
CD44-231ENST00000531110 DNAH2Q9P225 4427 aa2.21□□□□□ -2.06
CD44-231ENST00000531110 CSMD3Q7Z407 3707 aa2.2□□□□□ -2.06
CD44-231ENST00000531110 VPS13CQ709C8 3753 aa2.2□□□□□ -2.06
CD44-231ENST00000531110 KRTAP21-3Q3LHN1 58 aa2.19□□□□□ -2.06
CD44-231ENST00000531110 HUWE1Q7Z6Z7 4374 aaKnown RBP2.19□□□□□ -2.06
CD44-231ENST00000531110 STAB1Q9NY15 2570 aa2.19□□□□□ -2.06
CD44-231ENST00000531110 DNAH7Q8WXX0 4024 aa2.19□□□□□ -2.06
CD44-231ENST00000531110 NOTCH1P46531 2555 aa2.18□□□□□ -2.06
CD44-231ENST00000531110 PRKDCP78527 4128 aaKnown RBP2.18□□□□□ -2.06
CD44-231ENST00000531110 DNAH9Q9NYC9 4486 aa2.18□□□□□ -2.06
CD44-231ENST00000531110 PKD1L1Q8TDX9 2849 aa2.18□□□□□ -2.06
CD44-231ENST00000531110 STAB2Q8WWQ8 2551 aa2.17□□□□□ -2.06
CD44-231ENST00000531110 DNAH3Q8TD57 4116 aa2.17□□□□□ -2.06
CD44-231ENST00000531110 DNAH17Q9UFH2 4485 aa2.17□□□□□ -2.06
CD44-231ENST00000531110 SACSQ9NZJ4 4579 aa2.16□□□□□ -2.06
CD44-231ENST00000531110 SVEP1Q4LDE5 3571 aa2.16□□□□□ -2.06
CD44-231ENST00000531110 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
CD44-231ENST00000531110 FLNAP21333 2647 aaKnown RBP2.15□□□□□ -2.07
CD44-231ENST00000531110 DNAH10Q8IVF4 4471 aa2.15□□□□□ -2.07
CD44-231ENST00000531110 HECTD4Q9Y4D8 3996 aa2.14□□□□□ -2.07
CD44-231ENST00000531110 CSMD2Q7Z408 3487 aa2.13□□□□□ -2.07
CD44-231ENST00000531110 KRTAP8-1Q8IUC2 63 aa2.12□□□□□ -2.07
CD44-231ENST00000531110 ZANQ9Y493 2812 aa2.1□□□□□ -2.07
CD44-231ENST00000531110 KRTAP12-4P60329 112 aa2.09□□□□□ -2.07
CD44-231ENST00000531110 FLGP20930 4061 aaPredicted RBP2.09□□□□□ -2.08
CD44-231ENST00000531110 CUBNO60494 3623 aa2.08□□□□□ -2.08
CD44-231ENST00000531110 VPS13BQ7Z7G8 4022 aa2.07□□□□□ -2.08
CD44-231ENST00000531110 KRTAP6-3Q3LI67 103 aa2.07□□□□□ -2.08
CD44-231ENST00000531110 PKD1P98161 4303 aa2.07□□□□□ -2.08
CD44-231ENST00000531110 NSD1Q96L73 2696 aaPredicted RBP2.06□□□□□ -2.08
CD44-231ENST00000531110 MGAM2Q2M2H8 2515 aa2.06□□□□□ -2.08
CD44-231ENST00000531110 KRTAP5-8O75690 187 aa2.06□□□□□ -2.08
CD44-231ENST00000531110 KRTAP12-3P60328 96 aa2.06□□□□□ -2.08
CD44-231ENST00000531110 ZNF469Q96JG9 3925 aaPredicted RBP2.05□□□□□ -2.08
CD44-231ENST00000531110 KRTAP2-3P0C7H8 128 aa2.05□□□□□ -2.08
CD44-231ENST00000531110 KRTAP2-4Q9BYR9 128 aa2.05□□□□□ -2.08
CD44-231ENST00000531110 KRTAP2-1Q9BYU5 128 aa2.05□□□□□ -2.08
CD44-231ENST00000531110 KMT2AQ03164 3969 aa2.04□□□□□ -2.08
CD44-231ENST00000531110 TENM3Q9P273 2699 aa2.03□□□□□ -2.08
CD44-231ENST00000531110 APOBP04114 4563 aaKnown RBP2.02□□□□□ -2.09
CD44-231ENST00000531110 HSPG2P98160 4391 aa2.01□□□□□ -2.09
CD44-231ENST00000531110 LRP1Q07954 4544 aaKnown RBP1.99□□□□□ -2.09
CD44-231ENST00000531110 RYR3Q15413 4870 aa1.98□□□□□ -2.09
CD44-231ENST00000531110 KMT2CQ8NEZ4 4911 aaKnown RBP1.98□□□□□ -2.09
CD44-231ENST00000531110 PKHD1L1Q86WI1 4243 aa1.97□□□□□ -2.09
CD44-231ENST00000531110 DNAH5Q8TE73 4624 aa1.97□□□□□ -2.09
CD44-231ENST00000531110 TENM1Q9UKZ4 2725 aa1.96□□□□□ -2.1
CD44-231ENST00000531110 M0R2T5 61 aa1.96□□□□□ -2.1
CD44-231ENST00000531110 RYR1P21817 5038 aa1.95□□□□□ -2.1
CD44-231ENST00000531110 BIRC6Q9NR09 4857 aa1.95□□□□□ -2.1
CD44-231ENST00000531110 FAT3Q8TDW7 4589 aa1.95□□□□□ -2.1
CD44-231ENST00000531110 PCLOQ9Y6V0 5065 aa1.93□□□□□ -2.1
CD44-231ENST00000531110 FAT2Q9NYQ8 4349 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms